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Revision as of 17:40, 15 June 2012

Name:myotube
Namespace:cell
Definition:"A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908]
Synonyms: "myotubule" EXACT []
"single cell sarcomere" EXACT []
"skeletal muscle fiber" EXACT []
Alt_id: CL:0000369
Created by:tmeehan
Creation date:2010-09-24T01:13:01Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000188(cell of skeletal muscle),CL:0000228(multinucleate cell),CL:0000737(striated muscle cell)
develops_from:CL:0000515(skeletal muscle myoblast)



Children


is a:FF:0000163 (myotubule derived from skeletal muscle cells)
derives from:FF:0104975 (human myotube cell sample),FF:0200006 (myoblast differentiation to myotubes, control sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002372 (myotube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr8:106331633..106331642,+#_241ad9f2367a791451b2079501d6c856p15@ZFPM2
9.37e-99FFCP PHASE2:Hg19::chr8:106331633..106331642,+#_241ad9f2367a791451b2079501d6c856p15@ZFPM2
2.55e-98FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_1f124d5461040fb9dd217358fe14b0b2p15@HOXC10
2.55e-98FFCP PHASE1:Hg19::chr13:43938419..43938424,-#_1f124d5461040fb9dd217358fe14b0b2p@chr13:43938419..43938424, -
2.55e-98FFCP PHASE1:Hg19::chr1:186166946..186166955,-#_1f124d5461040fb9dd217358fe14b0b2p@chr1:186166946..186166955, -
2.55e-98FFCP PHASE2:Hg19::chr13:43938419..43938424,-#_1f124d5461040fb9dd217358fe14b0b2p@chr13:43938419..43938424, -
2.55e-98FFCP PHASE2:Hg19::chr4:26143606..26143611,+#_1f124d5461040fb9dd217358fe14b0b2p@chr4:26143606..26143611, +
2.55e-98FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_1f124d5461040fb9dd217358fe14b0b2p15@HOXC10
2.55e-98FFCP PHASE2:Hg19::chr1:186166946..186166955,-#_1f124d5461040fb9dd217358fe14b0b2p@chr1:186166946..186166955, -
2.55e-98FFCP PHASE1:Hg19::chr9:21496498..21496503,-#_1f124d5461040fb9dd217358fe14b0b2p@chr9:21496498..21496503, -
2.55e-98FFCP PHASE1:Hg19::chr4:130278144..130278146,+#_1f124d5461040fb9dd217358fe14b0b2p@chr4:130278144..130278146, +
2.55e-98FFCP PHASE2:Hg19::chr9:21496498..21496503,-#_1f124d5461040fb9dd217358fe14b0b2p@chr9:21496498..21496503, -
2.55e-98FFCP PHASE2:Hg19::chr4:130278144..130278146,+#_1f124d5461040fb9dd217358fe14b0b2p@chr4:130278144..130278146, +
2.55e-98FFCP PHASE1:Hg19::chr4:26143606..26143611,+#_1f124d5461040fb9dd217358fe14b0b2p@chr4:26143606..26143611, +
1.23e-66FFCP PHASE1:Hg19::chr2:224839996..224840004,-#_bfe7d799f8f18e5fe2e25dc774082245p46@SERPINE2
1.23e-66FFCP PHASE2:Hg19::chr2:224839996..224840004,-#_bfe7d799f8f18e5fe2e25dc774082245p46@SERPINE2
1.23e-66FFCP PHASE1:Hg19::chr7:112635723..112635728,-#_bfe7d799f8f18e5fe2e25dc774082245p4@ENST00000451962
1.23e-66FFCP PHASE2:Hg19::chr7:112635723..112635728,-#_bfe7d799f8f18e5fe2e25dc774082245p4@ENST00000451962
2.39e-66FFCP PHASE1:Hg19::chr18:67872642..67872645,-#_55831c27f6467d4f9f4af86633ae302dp@chr18:67872642..67872645, -
2.39e-66FFCP PHASE1:Hg19::chr13:99963626..99963628,-#_55831c27f6467d4f9f4af86633ae302dp@chr13:99963626..99963628, -
2.39e-66FFCP PHASE1:Hg19::chr5:52288160..52288176,+#_55831c27f6467d4f9f4af86633ae302dp@chr5:52288160..52288176, +
2.39e-66FFCP PHASE1:Hg19::chr4:188050642..188050645,+#_55831c27f6467d4f9f4af86633ae302dp@chr4:188050642..188050645, +
2.39e-66FFCP PHASE2:Hg19::chr18:67872642..67872645,-#_55831c27f6467d4f9f4af86633ae302dp@chr18:67872642..67872645, -
2.39e-66FFCP PHASE2:Hg19::chr13:99963626..99963628,-#_55831c27f6467d4f9f4af86633ae302dp@chr13:99963626..99963628, -
2.39e-66FFCP PHASE2:Hg19::chr5:52288160..52288176,+#_55831c27f6467d4f9f4af86633ae302dp@chr5:52288160..52288176, +
2.39e-66FFCP PHASE2:Hg19::chr4:188050642..188050645,+#_55831c27f6467d4f9f4af86633ae302dp@chr4:188050642..188050645, +
4.66e-66FFCP PHASE1:Hg19::chr16:2811988..2811995,+#_97282cd26f7683548bd4e01d285b5257p@chr16:2811988..2811995, +
4.66e-66FFCP PHASE1:Hg19::chr4:86954525..86954527,+#_97282cd26f7683548bd4e01d285b5257p@chr4:86954525..86954527, +
4.66e-66FFCP PHASE2:Hg19::chr11:92616200..92616202,+#_97282cd26f7683548bd4e01d285b5257p4@FAT3
4.66e-66FFCP PHASE2:Hg19::chr16:2811988..2811995,+#_97282cd26f7683548bd4e01d285b5257p@chr16:2811988..2811995, +
4.66e-66FFCP PHASE2:Hg19::chr4:86954525..86954527,+#_97282cd26f7683548bd4e01d285b5257p@chr4:86954525..86954527, +
4.66e-66FFCP PHASE1:Hg19::chr7:7222449..7222458,+#_97282cd26f7683548bd4e01d285b5257p10@C1GALT1
4.66e-66FFCP PHASE1:Hg19::chr11:92616200..92616202,+#_97282cd26f7683548bd4e01d285b5257p4@FAT3
4.66e-66FFCP PHASE2:Hg19::chr7:7222449..7222458,+#_97282cd26f7683548bd4e01d285b5257p10@C1GALT1
2.42e-50FFCP PHASE2:Hg19::chr11:64774372..64774383,-#_2c673edc7190e6a11e4b6a2df00bb4e1p@chr11:64774372..64774383, -
2.42e-50FFCP PHASE2:Hg19::chr7:91874538..91874551,-#_2c673edc7190e6a11e4b6a2df00bb4e1p13@KRIT1
2.42e-50FFCP PHASE2:Hg19::chr15:80352456..80352465,+#_2c673edc7190e6a11e4b6a2df00bb4e1p10@ZFAND6
2.42e-50FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_2c673edc7190e6a11e4b6a2df00bb4e1p@chr18:19769123..19769149, +
2.42e-50FFCP PHASE1:Hg19::chr11:64774372..64774383,-#_2c673edc7190e6a11e4b6a2df00bb4e1p@chr11:64774372..64774383, -
2.42e-50FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_2c673edc7190e6a11e4b6a2df00bb4e1p@chr18:19769123..19769149, +
2.42e-50FFCP PHASE1:Hg19::chr2:30865226..30865229,+#_2c673edc7190e6a11e4b6a2df00bb4e1p17@LCLAT1
2.42e-50FFCP PHASE1:Hg19::chr1:78353898..78353908,+#_2c673edc7190e6a11e4b6a2df00bb4e1p24@NEXN
2.42e-50FFCP PHASE2:Hg19::chr1:78353898..78353908,+#_2c673edc7190e6a11e4b6a2df00bb4e1p24@NEXN
2.42e-50FFCP PHASE1:Hg19::chr7:91874538..91874551,-#_2c673edc7190e6a11e4b6a2df00bb4e1p13@KRIT1
2.42e-50FFCP PHASE1:Hg19::chr15:80352456..80352465,+#_2c673edc7190e6a11e4b6a2df00bb4e1p10@ZFAND6
2.42e-50FFCP PHASE2:Hg19::chr2:30865226..30865229,+#_2c673edc7190e6a11e4b6a2df00bb4e1p17@LCLAT1
3.99e-50FFCP PHASE1:Hg19::chr11:117152220..117152232,+#_0d129808a327bf2d0cb52f5803dc3355p11@RNF214
3.99e-50FFCP PHASE1:Hg19::chr7:7595050..7595057,-#_0d129808a327bf2d0cb52f5803dc3355p@chr7:7595050..7595057, -
3.99e-50FFCP PHASE2:Hg19::chrX:69722913..69722915,+#_0d129808a327bf2d0cb52f5803dc3355p@chrX:69722913..69722915, +
3.99e-50FFCP PHASE1:Hg19::chr4:110434870..110434880,+#_0d129808a327bf2d0cb52f5803dc3355p@chr4:110434870..110434880, +
3.99e-50FFCP PHASE2:Hg19::chr18:55922965..55922972,+#_0d129808a327bf2d0cb52f5803dc3355p@chr18:55922965..55922972, +
3.99e-50FFCP PHASE1:Hg19::chr12:89919893..89919905,-#_0d129808a327bf2d0cb52f5803dc3355p6@POC1B-GALNT4
3.99e-50FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_0d129808a327bf2d0cb52f5803dc3355p@chr9:114720368..114720377, -
3.99e-50FFCP PHASE2:Hg19::chr13:26312285..26312294,+#_0d129808a327bf2d0cb52f5803dc3355p@chr13:26312285..26312294, +
3.99e-50FFCP PHASE1:Hg19::chr3:114061988..114061990,-#_0d129808a327bf2d0cb52f5803dc3355p@chr3:114061988..114061990, -
3.99e-50FFCP PHASE2:Hg19::chr4:110434870..110434880,+#_0d129808a327bf2d0cb52f5803dc3355p@chr4:110434870..110434880, +
3.99e-50FFCP PHASE2:Hg19::chr4:6592942..6592947,-#_0d129808a327bf2d0cb52f5803dc3355p@chr4:6592942..6592947, -
3.99e-50FFCP PHASE2:Hg19::chr12:89919893..89919905,-#_0d129808a327bf2d0cb52f5803dc3355p6@POC1B-GALNT4
3.99e-50FFCP PHASE2:Hg19::chr8:107561486..107561489,+#_0d129808a327bf2d0cb52f5803dc3355p@chr8:107561486..107561489, +
3.99e-50FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_0d129808a327bf2d0cb52f5803dc3355p@chr9:114720368..114720377, -
3.99e-50FFCP PHASE2:Hg19::chr7:7595050..7595057,-#_0d129808a327bf2d0cb52f5803dc3355p@chr7:7595050..7595057, -
3.99e-50FFCP PHASE2:Hg19::chr11:117152220..117152232,+#_0d129808a327bf2d0cb52f5803dc3355p11@RNF214
3.99e-50FFCP PHASE2:Hg19::chr3:114061988..114061990,-#_0d129808a327bf2d0cb52f5803dc3355p@chr3:114061988..114061990, -
3.99e-50FFCP PHASE1:Hg19::chr5:131892954..131892969,+#_0d129808a327bf2d0cb52f5803dc3355p9@RAD50
3.99e-50FFCP PHASE1:Hg19::chrX:69722913..69722915,+#_0d129808a327bf2d0cb52f5803dc3355p@chrX:69722913..69722915, +
3.99e-50FFCP PHASE1:Hg19::chr18:55922965..55922972,+#_0d129808a327bf2d0cb52f5803dc3355p@chr18:55922965..55922972, +
3.99e-50FFCP PHASE1:Hg19::chr4:6592942..6592947,-#_0d129808a327bf2d0cb52f5803dc3355p@chr4:6592942..6592947, -
3.99e-50FFCP PHASE1:Hg19::chr8:107561486..107561489,+#_0d129808a327bf2d0cb52f5803dc3355p@chr8:107561486..107561489, +
3.99e-50FFCP PHASE2:Hg19::chr5:131892954..131892969,+#_0d129808a327bf2d0cb52f5803dc3355p9@RAD50
3.99e-50FFCP PHASE1:Hg19::chr13:26312285..26312294,+#_0d129808a327bf2d0cb52f5803dc3355p@chr13:26312285..26312294, +
6.58e-50FFCP PHASE2:Hg19::chr21:46420365..46420376,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr21:46420365..46420376, +
6.58e-50FFCP PHASE1:Hg19::chr11:123362263..123362276,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr11:123362263..123362276, +
6.58e-50FFCP PHASE2:Hg19::chr15:35796430..35796456,-#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr15:35796430..35796456, -
6.58e-50FFCP PHASE2:Hg19::chr12:112451000..112451011,-#_68e9ae2bccfcdc06fa01b0c80e604ea3p7@TMEM116
6.58e-50FFCP PHASE1:Hg19::chr7:63560612..63560634,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p1@GUSBP6
6.58e-50FFCP PHASE2:Hg19::chr11:123362263..123362276,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr11:123362263..123362276, +
6.58e-50FFCP PHASE1:Hg19::chr12:112451000..112451011,-#_68e9ae2bccfcdc06fa01b0c80e604ea3p7@TMEM116
6.58e-50FFCP PHASE2:Hg19::chr7:63560612..63560634,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p1@GUSBP6
6.58e-50FFCP PHASE1:Hg19::chr21:46420365..46420376,+#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr21:46420365..46420376, +
6.58e-50FFCP PHASE1:Hg19::chr15:35796430..35796456,-#_68e9ae2bccfcdc06fa01b0c80e604ea3p@chr15:35796430..35796456, -
9.91e-41FFCP PHASE2:Hg19::chr3:51345332..51345335,+#_2277549a7cf9d2d178064a7534972223p@chr3:51345332..51345335, +
9.91e-41FFCP PHASE2:Hg19::chr21:35340759..35340770,-#_2277549a7cf9d2d178064a7534972223p@chr21:35340759..35340770, -
9.91e-41FFCP PHASE1:Hg19::chr12:31882130..31882150,-#_2277549a7cf9d2d178064a7534972223p4@AMN1
9.91e-41FFCP PHASE2:Hg19::chr12:31882130..31882150,-#_2277549a7cf9d2d178064a7534972223p4@AMN1
9.91e-41FFCP PHASE1:Hg19::chr3:51345332..51345335,+#_2277549a7cf9d2d178064a7534972223p@chr3:51345332..51345335, +
9.91e-41FFCP PHASE1:Hg19::chr21:35340759..35340770,-#_2277549a7cf9d2d178064a7534972223p@chr21:35340759..35340770, -
1.48e-40FFCP PHASE2:Hg19::chr4:28866276..28866280,+#_e0fe45c565c5d04139547e1c0ed69e38p@chr4:28866276..28866280, +
1.48e-40FFCP PHASE1:Hg19::chr3:173650372..173650378,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr3:173650372..173650378, -
1.48e-40FFCP PHASE1:Hg19::chr19:50529329..50529340,+#_e0fe45c565c5d04139547e1c0ed69e38p6@ZNF473
1.48e-40FFCP PHASE1:Hg19::chr4:187526365..187526370,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr4:187526365..187526370, -
1.48e-40FFCP PHASE2:Hg19::chr7:92213359..92213360,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr7:92213359..92213360, -
1.48e-40FFCP PHASE1:Hg19::chr11:35110037..35110046,+#_e0fe45c565c5d04139547e1c0ed69e38p@chr11:35110037..35110046, +
1.48e-40FFCP PHASE2:Hg19::chr3:173650372..173650378,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr3:173650372..173650378, -
1.48e-40FFCP PHASE2:Hg19::chr19:50529329..50529340,+#_e0fe45c565c5d04139547e1c0ed69e38p6@ZNF473
1.48e-40FFCP PHASE1:Hg19::chr15:41786087..41786090,+#_e0fe45c565c5d04139547e1c0ed69e38p8@ITPKA
1.48e-40FFCP PHASE1:Hg19::chr4:28866276..28866280,+#_e0fe45c565c5d04139547e1c0ed69e38p@chr4:28866276..28866280, +
1.48e-40FFCP PHASE2:Hg19::chr4:187526365..187526370,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr4:187526365..187526370, -
1.48e-40FFCP PHASE2:Hg19::chr11:35110037..35110046,+#_e0fe45c565c5d04139547e1c0ed69e38p@chr11:35110037..35110046, +
1.48e-40FFCP PHASE2:Hg19::chr15:41786087..41786090,+#_e0fe45c565c5d04139547e1c0ed69e38p8@ITPKA
1.48e-40FFCP PHASE1:Hg19::chr7:92213359..92213360,-#_e0fe45c565c5d04139547e1c0ed69e38p@chr7:92213359..92213360, -

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