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{{Coexpression_clusters
{{Coexpression_clusters
|full_id=C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral
|full_id=C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral
|gostat_on_coexpression_clusters=GO:0016021!integral to membrane!0.0111405358355432!221074;5618;9376;2348;83552;26266;5168;344905;55671;948;84216;63917;9075$GO:0031224!intrinsic to membrane!0.0111405358355432!221074;5618;9376;2348;83552;26266;5168;344905;55671;948;84216;63917;9075$GO:0016020!membrane!0.0130779249451524!221074;5618;9376;2348;83552;26266;5168;10391;344905;55671;948;84216;63917;121260;9075$GO:0044425!membrane part!0.0130779249451524!221074;5618;9376;2348;83552;26266;5168;344905;55671;948;84216;63917;9075$GO:0015382!sodium:sulfate symporter activity!0.02254798068998!26266$GO:0004925!prolactin receptor activity!0.02254798068998!5618$GO:0046655!folic acid metabolic process!0.02254798068998!2348$GO:0042976!activation of JAK protein!0.02254798068998!5618$GO:0042977!tyrosine phosphorylation of JAK2 protein!0.02254798068998!5618$GO:0047391!alkylglycerophosphoethanolamine phosphodiesterase activity!0.02254798068998!5168$GO:0042978!ornithine decarboxylase activator activity!0.02254798068998!5618$GO:0051179!localization!0.0370790960593757!221074;9376;2348;26266;7276;5168;344905;948;121260$GO:0015349!thyroid hormone transmembrane transporter activity!0.0370790960593757!7276$GO:0005887!integral to plasma membrane!0.0370790960593757!9376;2348;26266;5168;948$GO:0031226!intrinsic to plasma membrane!0.0370790960593757!9376;2348;26266;5168;948$GO:0007171!transmembrane receptor protein tyrosine kinase activation (dimerization)!0.0413124155449544!5618$GO:0000940!outer kinetochore of condensed chromosome!0.0413124155449544!701$GO:0051233!spindle midzone!0.0413124155449544!701$GO:0004528!phosphodiesterase I activity!0.0490975201158827!5168$GO:0044459!plasma membrane part!0.0490975201158827!9376;2348;26266;5168;9075;948$GO:0006810!transport!0.0490975201158827!221074;9376;2348;26266;7276;344905;948;121260
|id=C160
|id=C160
}}
}}

Revision as of 17:35, 18 May 2012


Full id: C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral



Phase1 CAGE Peaks

Hg19::chr10:18240814..18240829,+p5@SLC39A12
Hg19::chr10:18240834..18240897,+p1@SLC39A12
Hg19::chr10:18242109..18242116,+p9@SLC39A12
Hg19::chr10:18242120..18242136,+p4@SLC39A12
Hg19::chr10:18242141..18242184,+p2@SLC39A12
Hg19::chr11:119216846..119216857,-p@chr11:119216846..119216857
-
Hg19::chr11:119217365..119217398,-p1@MFRP
p2@C1QTNF5
Hg19::chr11:62783276..62783295,-p2@SLC22A8
Hg19::chr11:71869850..71869861,+p1@ENST00000544535
Hg19::chr11:71900740..71900772,+p3@FOLR1
Hg19::chr12:129304411..129304414,-p11@SLC15A4
Hg19::chr12:20951599..20951604,+p@chr12:20951599..20951604
+
Hg19::chr12:44467399..44467407,+p12@TMEM117
Hg19::chr12:44467410..44467418,+p13@TMEM117
Hg19::chr12:47779637..47779662,-p@chr12:47779637..47779662
-
Hg19::chr14:91932629..91932652,-p14@SMEK1
Hg19::chr15:40492238..40492270,+p8@BUB1B
Hg19::chr15:68924373..68924411,+p16@CORO2B
Hg19::chr17:48912918..48912925,+p3@WFIKKN2
Hg19::chr17:48912939..48912963,+p1@WFIKKN2
Hg19::chr17:48913037..48913055,+p2@WFIKKN2
Hg19::chr17:48913092..48913105,+p4@WFIKKN2
Hg19::chr17:57229155..57229198,-p@chr17:57229155..57229198
-
Hg19::chr18:29171832..29171847,+p1@TTR
Hg19::chr18:29172846..29172875,+p4@TTR
Hg19::chr18:29172879..29172882,+p5@TTR
Hg19::chr18:29172884..29172921,+p2@TTR
Hg19::chr18:29172924..29172962,+p3@TTR
Hg19::chr18:29175078..29175088,+p@chr18:29175078..29175088
+
Hg19::chr18:29175095..29175110,+p@chr18:29175095..29175110
+
Hg19::chr18:29175113..29175118,+p@chr18:29175113..29175118
+
Hg19::chr18:29175123..29175131,+p@chr18:29175123..29175131
+
Hg19::chr18:29175152..29175199,+p@chr18:29175152..29175199
+
Hg19::chr18:29175184..29175198,-p@chr18:29175184..29175198
-
Hg19::chr18:29178527..29178571,+p@chr18:29178527..29178571
+
Hg19::chr18:29178550..29178583,-p@chr18:29178550..29178583
-
Hg19::chr18:29178574..29178579,+p@chr18:29178574..29178579
+
Hg19::chr18:29178581..29178599,+p@chr18:29178581..29178599
+
Hg19::chr18:29178596..29178626,-p@chr18:29178596..29178626
-
Hg19::chr18:29178609..29178620,+p@chr18:29178609..29178620
+
Hg19::chr18:29178630..29178652,-p@chr18:29178630..29178652
-
Hg19::chr18:29178636..29178652,+p@chr18:29178636..29178652
+
Hg19::chr18:29178674..29178686,-p@chr18:29178674..29178686
-
Hg19::chr18:29178674..29178693,+p@chr18:29178674..29178693
+
Hg19::chr18:29178704..29178717,+p@chr18:29178704..29178717
+
Hg19::chr18:29178720..29178749,+p@chr18:29178720..29178749
+
Hg19::chr18:59423008..59423021,+p@chr18:59423008..59423021
+
Hg19::chr19:16830652..16830663,+p3@NWD1
Hg19::chr19:16830713..16830741,+p4@NWD1
Hg19::chr19:16830774..16830814,+p1@NWD1
Hg19::chr1:20617362..20617380,+p1@VWA5B1
Hg19::chr1:220924670..220924672,+p@chr1:220924670..220924672
+
Hg19::chr20:30264810..30264831,-p@chr20:30264810..30264831
-
Hg19::chr21:25014751..25014755,+p@chr21:25014751..25014755
+
Hg19::chr2:62453859..62453863,-p@chr2:62453859..62453863
-
Hg19::chr2:8851401..8851408,+p@chr2:8851401..8851408
+
Hg19::chr3:156840776..156840823,-p1@LOC339894
Hg19::chr3:193096512..193096519,-p3@ATP13A5
Hg19::chr3:193096536..193096547,-p1@ATP13A5
Hg19::chr3:59750150..59750155,-p@chr3:59750150..59750155
-
Hg19::chr3:59750161..59750179,-p@chr3:59750161..59750179
-
Hg19::chr3:59750186..59750202,-p@chr3:59750186..59750202
-
Hg19::chr3:59750207..59750262,-p@chr3:59750207..59750262
-
Hg19::chr3:61241825..61241830,-p@chr3:61241825..61241830
-
Hg19::chr4:186318393..186318446,-p@chr4:186318393..186318446
-
Hg19::chr4:34621389..34621413,+p@chr4:34621389..34621413
+
Hg19::chr5:33514132..33514156,+p@chr5:33514132..33514156
+
Hg19::chr5:35089799..35089804,-p20@PRLR
Hg19::chr5:35089832..35089839,-p26@PRLR
Hg19::chr5:35089843..35089860,-p7@PRLR
Hg19::chr5:35089867..35089884,-p5@PRLR
Hg19::chr5:35090057..35090065,-p27@PRLR
Hg19::chr5:35090259..35090267,-p12@PRLR
Hg19::chr5:35090318..35090324,-p@chr5:35090318..35090324
-
Hg19::chr6:132580699..132580702,+p@chr6:132580699..132580702
+
Hg19::chr7:129012882..129012891,-p@chr7:129012882..129012891
-
Hg19::chr7:129013106..129013120,-p@chr7:129013106..129013120
-
Hg19::chr7:129015511..129015519,+p30@AHCYL2
Hg19::chr7:129015540..129015550,+p23@AHCYL2
Hg19::chr7:129015616..129015619,+p38@AHCYL2
Hg19::chr7:129015671..129015685,+p11@AHCYL2
Hg19::chr7:129015806..129015815,+p@chr7:129015806..129015815
+
Hg19::chr7:129015906..129015915,+p@chr7:129015906..129015915
+
Hg19::chr7:129027894..129027906,+p16@AHCYL2
Hg19::chr7:135366185..135366192,-p@chr7:135366185..135366192
-
Hg19::chr7:135366210..135366222,-p@chr7:135366210..135366222
-
Hg19::chr7:135366373..135366382,-p@chr7:135366373..135366382
-
Hg19::chr7:135412540..135412552,-p2@SLC13A4
Hg19::chr7:135412925..135412944,-p1@SLC13A4
Hg19::chr7:150529074..150529076,+p@chr7:150529074..150529076
+
Hg19::chr7:151771377..151771389,+p2@GALNT11
Hg19::chr7:151772200..151772217,+p13@GALNT11
Hg19::chr7:80255485..80255507,+p24@CD36
Hg19::chr7:80255514..80255524,+p28@CD36
Hg19::chr8:120685906..120685920,-p4@ENPP2
Hg19::chr8:12803139..12803144,+p23@KIAA1456
Hg19::chr8:12803146..12803155,+p17@KIAA1456
Hg19::chr8:12803176..12803195,+p3@KIAA1456
Hg19::chr8:72234691..72234696,-p13@EYA1
Hg19::chr9:113490531..113490547,+p@chr9:113490531..113490547
+
Hg19::chr9:130637244..130637303,-p4@AK1
Hg19::chr9:20927844..20927855,+p@chr9:20927844..20927855
+
Hg19::chr9:34381453..34381479,-p3@C9orf24
Hg19::chr9:5954514..5954521,-p18@KIAA2026
Hg19::chr9:73396238..73396243,-p@chr9:73396238..73396243
-
Hg19::chrX:106163626..106163638,+p2@CLDN2
Hg19::chrX:108041633..108041636,+p@chrX:108041633..108041636
+
Hg19::chrX:109683362..109683372,-p9@AMMECR1
Hg19::chrX:152798683..152798691,+p@chrX:152798683..152798691
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016021integral to membrane0.0111405358355432
GO:0031224intrinsic to membrane0.0111405358355432
GO:0016020membrane0.0130779249451524
GO:0044425membrane part0.0130779249451524
GO:0015382sodium:sulfate symporter activity0.02254798068998
GO:0004925prolactin receptor activity0.02254798068998
GO:0046655folic acid metabolic process0.02254798068998
GO:0042976activation of JAK protein0.02254798068998
GO:0042977tyrosine phosphorylation of JAK2 protein0.02254798068998
GO:0047391alkylglycerophosphoethanolamine phosphodiesterase activity0.02254798068998
GO:0042978ornithine decarboxylase activator activity0.02254798068998
GO:0051179localization0.0370790960593757
GO:0015349thyroid hormone transmembrane transporter activity0.0370790960593757
GO:0005887integral to plasma membrane0.0370790960593757
GO:0031226intrinsic to plasma membrane0.0370790960593757
GO:0007171transmembrane receptor protein tyrosine kinase activation (dimerization)0.0413124155449544
GO:0000940outer kinetochore of condensed chromosome0.0413124155449544
GO:0051233spindle midzone0.0413124155449544
GO:0004528phosphodiesterase I activity0.0490975201158827
GO:0044459plasma membrane part0.0490975201158827
GO:0006810transport0.0490975201158827



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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