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|full_id=C1811_Mesenchymal_Alveolar_Pericytes_Placental_Renal_Melanocyte_Fibroblast
|full_id=C1811_Mesenchymal_Alveolar_Pericytes_Placental_Renal_Melanocyte_Fibroblast
|id=C1811
|id=C1811
|ontology_enrichment_celltype=CL:0000055!1.76e-19!180;CL:0000222!7.06e-19!119;CL:0000220!5.51e-18!246;CL:0002321!9.80e-18!248;CL:0000183!5.01e-15!59;CL:0000680!5.69e-13!57;CL:0000056!5.69e-13!57;CL:0000355!5.69e-13!57;CL:0000192!1.49e-12!42;CL:0000514!1.49e-12!42;CL:0000187!1.65e-12!54;CL:0002371!3.11e-12!591;CL:0000144!5.83e-11!625;CL:0000359!2.38e-10!32;CL:0000393!6.21e-10!60;CL:0000211!6.21e-10!60;CL:0000057!2.40e-08!75;CL:0002078!8.16e-08!44;CL:0000115!1.03e-07!35;CL:0000548!3.13e-07!679;CL:0000004!3.13e-07!679;CL:0000255!3.13e-07!679;CL:1000449!3.20e-07!16;CL:0000325!4.76e-07!39;CL:0000213!6.81e-07!57;CL:0000215!6.81e-07!57
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003914!1.13e-17!118;UBERON:0004872!1.19e-14!84;UBERON:0005256!1.72e-14!143;UBERON:0002049!5.92e-14!79;UBERON:0007798!5.92e-14!79;UBERON:0000468!1.67e-13!659;UBERON:0000486!7.12e-13!82;UBERON:0000490!9.73e-13!138;UBERON:0000119!1.21e-12!312;UBERON:0004290!1.49e-12!70;UBERON:0000483!2.64e-12!309;UBERON:0000055!3.66e-12!69;UBERON:0001637!5.14e-12!42;UBERON:0003509!5.14e-12!42;UBERON:0004572!5.14e-12!42;UBERON:0000914!1.77e-11!83;UBERON:0002329!1.77e-11!83;UBERON:0003077!1.77e-11!83;UBERON:0003059!1.77e-11!83;UBERON:0007282!1.77e-11!83;UBERON:0009618!1.77e-11!83;UBERON:0007285!1.77e-11!83;UBERON:0002100!2.31e-11!216;UBERON:0000475!2.62e-11!365;UBERON:0001134!4.11e-11!61;UBERON:0002036!4.11e-11!61;UBERON:0003082!4.11e-11!61;UBERON:0001981!6.09e-11!60;UBERON:0007500!6.09e-11!60;UBERON:0004537!6.09e-11!60;UBERON:0006965!6.09e-11!60;UBERON:0002385!6.22e-11!63;UBERON:0001015!6.22e-11!63;UBERON:0000383!6.22e-11!63;UBERON:0001009!6.78e-11!113;UBERON:0004535!1.43e-10!110;UBERON:0000480!3.82e-10!626;UBERON:0000467!4.02e-10!625;UBERON:0004573!4.39e-09!33;UBERON:0004571!4.39e-09!33;UBERON:0000481!5.79e-09!347;UBERON:0000477!6.72e-09!286;UBERON:0004111!3.21e-08!241;UBERON:0000926!5.57e-08!448;UBERON:0004120!5.57e-08!448;UBERON:0006603!5.57e-08!448;UBERON:0000923!6.68e-08!604;UBERON:0005291!6.68e-08!604;UBERON:0006598!6.68e-08!604;UBERON:0002532!6.68e-08!604;UBERON:0002050!8.36e-08!605;UBERON:0005423!8.36e-08!605;UBERON:0000922!8.86e-08!612;UBERON:0003104!1.99e-07!238;UBERON:0009142!1.99e-07!238;UBERON:0006555!2.51e-07!17;UBERON:0005103!2.51e-07!17;UBERON:0000083!2.51e-07!17;UBERON:0009201!2.51e-07!17;UBERON:0004819!2.51e-07!17;UBERON:0006553!2.51e-07!17;UBERON:0003074!2.51e-07!17;UBERON:0003060!2.51e-07!17;UBERON:0000080!2.81e-07!18;UBERON:0002120!2.81e-07!18;UBERON:0004875!2.81e-07!18;UBERON:0005721!2.81e-07!18;UBERON:0005754!2.81e-07!18;UBERON:0007297!2.81e-07!18;UBERON:0004211!3.20e-07!16;UBERON:0001285!3.20e-07!16;UBERON:0007684!3.20e-07!16;UBERON:0003220!3.20e-07!16;UBERON:0004208!3.20e-07!16;UBERON:0009569!4.50e-07!113;UBERON:0004876!4.68e-07!20;UBERON:0000353!5.77e-07!17;UBERON:0000025!9.57e-07!194
}}
}}

Revision as of 14:16, 21 May 2012


Full id: C1811_Mesenchymal_Alveolar_Pericytes_Placental_Renal_Melanocyte_Fibroblast



Phase1 CAGE Peaks

Hg19::chr19:15236470..15236542,-p1@ILVBL
Hg19::chr19:1905365..1905411,+p1@ADAT3
p1@SCAMP4
Hg19::chr1:11986442..11986502,-p1@KIAA2013
Hg19::chr3:50396911..50396972,-p1@TMEM115
Hg19::chr3:51705222..51705281,+p1@TEX264


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial tube1.13e-17118
splanchnic layer of lateral plate mesoderm1.19e-1484
trunk mesenchyme1.72e-14143
vasculature5.92e-1479
vascular system5.92e-1479
multi-cellular organism1.67e-13659
multilaminar epithelium7.12e-1382
unilaminar epithelium9.73e-13138
cell layer1.21e-12312
dermomyotome1.49e-1270
epithelium2.64e-12309
vessel3.66e-1269
artery5.14e-1242
arterial blood vessel5.14e-1242
arterial system5.14e-1242
somite1.77e-1183
paraxial mesoderm1.77e-1183
presomitic mesoderm1.77e-1183
presumptive segmental plate1.77e-1183
trunk paraxial mesoderm1.77e-1183
presumptive paraxial mesoderm1.77e-1183
trunk2.31e-11216
organism subdivision2.62e-11365
skeletal muscle tissue4.11e-1161
striated muscle tissue4.11e-1161
myotome4.11e-1161
blood vessel6.09e-1160
epithelial tube open at both ends6.09e-1160
blood vasculature6.09e-1160
vascular cord6.09e-1160
muscle tissue6.22e-1163
musculature6.22e-1163
musculature of body6.22e-1163
circulatory system6.78e-11113
cardiovascular system1.43e-10110
anatomical group3.82e-10626
anatomical system4.02e-10625
systemic artery4.39e-0933
systemic arterial system4.39e-0933
multi-tissue structure5.79e-09347
anatomical cluster6.72e-09286
anatomical conduit3.21e-08241
mesoderm5.57e-08448
mesoderm-derived structure5.57e-08448
presumptive mesoderm5.57e-08448
germ layer6.68e-08604
embryonic tissue6.68e-08604
presumptive structure6.68e-08604
epiblast (generic)6.68e-08604
embryonic structure8.36e-08605
developing anatomical structure8.36e-08605
embryo8.86e-08612
mesenchyme1.99e-07238
entire embryonic mesenchyme1.99e-07238
excretory tube2.51e-0717
mesonephric epithelium2.51e-0717
mesonephric tubule2.51e-0717
nephric duct2.51e-0717
kidney epithelium2.51e-0717
renal duct2.51e-0717
mesonephric duct2.51e-0717
pronephric duct2.51e-0717
mesonephros2.81e-0718
pronephros2.81e-0718
nephrogenic cord2.81e-0718
pronephric mesoderm2.81e-0718
rostral part of nephrogenic cord2.81e-0718
presumptive pronephric mesoderm2.81e-0718
nephron epithelium3.20e-0716
nephron3.20e-0716
uriniferous tubule3.20e-0716
metanephric mesenchyme3.20e-0716
nephrogenic mesenchyme3.20e-0716


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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