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<H3>Homer <i>de novo</i> Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged</H3>
<H3>Homer <i>de novo</i> Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged</H3>

Revision as of 20:41, 25 May 2012

Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC




Homer de novo Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged

P-value threshold: 1e-15
Matrix similarity threshold: 0.75
Information content threshold: 1.5
Minimum target frequency: 50
Minimum background percentage: -1
Total target sequences = 5327
Total background sequences = 43180
Rank
Motif
Enrichment
and P-value
(ln(P-value))
Best Match/Details
and Motif File
1 9.14% Targets
1.14% Backgr.
P < 1e-264
(-6.092e+02)
JUN.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
2 11.38% Targets
2.45% Backgr.
P < 1e-209
(-4.824e+02)
SOX10_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
3 7.12% Targets
1.28% Backgr.
P < 1e-153
(-3.526e+02)
RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
4 14.68% Targets
5.34% Backgr.
P < 1e-140
(-3.229e+02)
CREB1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
5 60.12% Targets
44.92% Backgr.
P < 1e-109
(-2.510e+02)
NFYA_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
6 14.49% Targets
6.31% Backgr.
P < 1e-99
(-2.296e+02)
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
7 26.46% Targets
15.18% Backgr.
P < 1e-98
(-2.277e+02)
E4F1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
8 15.02% Targets
7.77% Backgr.
P < 1e-69
(-1.602e+02)
RFX1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
9 25.03% Targets
15.74% Backgr.
P < 1e-67
(-1.553e+02)
SP1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
10 5.73% Targets
2.01% Backgr.
P < 1e-55
(-1.284e+02)
ATF1_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
11 5.88% Targets
2.10% Backgr.
P < 1e-55
(-1.280e+02)
NFYB_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
12 11.43% Targets
5.88% Backgr.
P < 1e-52
(-1.214e+02)
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
13 14.31% Targets
8.32% Backgr.
P < 1e-47
(-1.083e+02)
ATF5_CREB3.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
14 4.98% Targets
1.78% Backgr.
P < 1e-46
(-1.081e+02)
RFX2_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
15 65.83% Targets
56.15% Backgr.
P < 1e-46
(-1.070e+02)
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
16 5.01% Targets
1.87% Backgr.
P < 1e-44
(-1.018e+02)
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
17 45.42% Targets
36.08% Backgr.
P < 1e-43
(-1.010e+02)
ATF3_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
18 3.57% Targets
1.10% Backgr.
P < 1e-41
(-9.658e+01)
ATF2.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
19 42.47% Targets
33.66% Backgr.
P < 1e-40
(-9.269e+01)
PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
20 13.91% Targets
8.44% Backgr.
P < 1e-39
(-9.111e+01)
ELK1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
21 8.04% Targets
4.06% Backgr.
P < 1e-38
(-8.841e+01)
MYB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
22 43.56% Targets
35.32% Backgr.
P < 1e-34
(-8.012e+01)
E2F5_do_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
23 51.05% Targets
42.61% Backgr.
P < 1e-34
(-8.003e+01)
CDX1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
24 29.05% Targets
22.01% Backgr.
P < 1e-32
(-7.498e+01)
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
25 4.41% Targets
1.84% Backgr.
P < 1e-31
(-7.364e+01)
BATF_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
26 9.31% Targets
5.37% Backgr.
P < 1e-30
(-7.093e+01)
MAFG_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
27 24.69% Targets
18.41% Backgr.
P < 1e-29
(-6.805e+01)
HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
28 25.03% Targets
18.78% Backgr.
P < 1e-28
(-6.643e+01)
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
29 18.64% Targets
13.45% Backgr.
P < 1e-25
(-5.925e+01)
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
30 25.25% Targets
19.53% Backgr.
P < 1e-23
(-5.516e+01)
E2F(E2F)/Cell-Cycle-Exp/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
31 22.64% Targets
17.33% Backgr.
P < 1e-22
(-5.185e+01)
MYB_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
32 48.33% Targets
41.62% Backgr.
P < 1e-22
(-5.177e+01)
SPIB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
33 5.91% Targets
3.25% Backgr.
P < 1e-22
(-5.162e+01)
MYB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
34 1.69% Targets
0.49% Backgr.
P < 1e-22
(-5.087e+01)
HSF2_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
35 87.66% Targets
82.97% Backgr.
P < 1e-20
(-4.812e+01)
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
36 12.20% Targets
8.41% Backgr.
P < 1e-20
(-4.724e+01)
NRF1.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
37 49.36% Targets
42.96% Backgr.
P < 1e-20
(-4.723e+01)
TGIF1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
38 1.88% Targets
0.62% Backgr.
P < 1e-20
(-4.671e+01)
CREB1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
39 3.76% Targets
1.81% Backgr.
P < 1e-20
(-4.632e+01)
ETS:E-box/HPC7-Scl-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
40 13.67% Targets
9.71% Backgr.
P < 1e-19
(-4.582e+01)
PRGR_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
41 9.01% Targets
5.88% Backgr.
P < 1e-19
(-4.403e+01)
ZBT7B_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
42 50.54% Targets
44.43% Backgr.
P < 1e-18
(-4.313e+01)
TBP.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
43 3.32% Targets
1.60% Backgr.
P < 1e-18
(-4.160e+01)
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
44 59.59% Targets
53.74% Backgr.
P < 1e-17
(-4.004e+01)
ISL1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
45 5.43% Targets
3.16% Backgr.
P < 1e-17
(-3.975e+01)
SRBP2_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
46 2.97% Targets
1.41% Backgr.
P < 1e-16
(-3.816e+01)
NFY{A,B,C}.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)


Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology

AnatomyCell type Disease

UBERON:

CL:

Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: