Personal tools

UBERON:0005420: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0005420 |name=hindlimb/pelvic fin bud |namespace= |def="A limb bud that develops into a hindlimb or pelvic fin." [OBOL:automatic] |xref=VHOG:0001260;;...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0000154
|part_of=UBERON:0000154
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:22, 15 June 2012

Name:hindlimb/pelvic fin bud
Definition:"A limb bud that develops into a hindlimb or pelvic fin." [OBOL:automatic]
Xrefs:
links:

VHOG:0001260

ZFA:0001384
Comments:at this time we have no need to name a more specific 'pelvic fin bud' class, but we may in future

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004357(paired limb/fin bud)
develops_from:UBERON:0005730(hindlimb/pelvic fin field)
part_of:UBERON:0000154(posterior region of body)



Children

is a:UBERON:0005418 (hindlimb bud)
develops from:UBERON:0004709 (pelvic appendage)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005420 (hindlimb/pelvic fin bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_d7fb146e660e460b6e6a3ebddaffd043p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_d7fb146e660e460b6e6a3ebddaffd043p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_d7fb146e660e460b6e6a3ebddaffd043p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_d7fb146e660e460b6e6a3ebddaffd043p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_d7fb146e660e460b6e6a3ebddaffd043p@chr11:3691037..3691040, +
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_27009655c2ffeb777dbe1d24be6d7d58p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_27009655c2ffeb777dbe1d24be6d7d58p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_27009655c2ffeb777dbe1d24be6d7d58p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_27009655c2ffeb777dbe1d24be6d7d58p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_27009655c2ffeb777dbe1d24be6d7d58p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_27009655c2ffeb777dbe1d24be6d7d58p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_27009655c2ffeb777dbe1d24be6d7d58p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_27009655c2ffeb777dbe1d24be6d7d58p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_27009655c2ffeb777dbe1d24be6d7d58p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_27009655c2ffeb777dbe1d24be6d7d58p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_27009655c2ffeb777dbe1d24be6d7d58p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_27009655c2ffeb777dbe1d24be6d7d58p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_27009655c2ffeb777dbe1d24be6d7d58p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_27009655c2ffeb777dbe1d24be6d7d58p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_27009655c2ffeb777dbe1d24be6d7d58p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_27009655c2ffeb777dbe1d24be6d7d58p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_27009655c2ffeb777dbe1d24be6d7d58p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_27009655c2ffeb777dbe1d24be6d7d58p@chr5:117747577..117747580, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_98458d3def512ef2ee1d98ccac42d231p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_98458d3def512ef2ee1d98ccac42d231p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_98458d3def512ef2ee1d98ccac42d231p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_98458d3def512ef2ee1d98ccac42d231p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_98458d3def512ef2ee1d98ccac42d231p73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_98458d3def512ef2ee1d98ccac42d231p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_98458d3def512ef2ee1d98ccac42d231p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_98458d3def512ef2ee1d98ccac42d231p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_98458d3def512ef2ee1d98ccac42d231p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_98458d3def512ef2ee1d98ccac42d231p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_98458d3def512ef2ee1d98ccac42d231p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_98458d3def512ef2ee1d98ccac42d231p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_98458d3def512ef2ee1d98ccac42d231p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_98458d3def512ef2ee1d98ccac42d231p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_98458d3def512ef2ee1d98ccac42d231p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_98458d3def512ef2ee1d98ccac42d231p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_98458d3def512ef2ee1d98ccac42d231p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_98458d3def512ef2ee1d98ccac42d231p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_98458d3def512ef2ee1d98ccac42d231p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_98458d3def512ef2ee1d98ccac42d231p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_98458d3def512ef2ee1d98ccac42d231p@chr2:179656442..179656451, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005420&oldid=1833224"