UBERON:0009773: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0009773
|name=renal tubule
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|def="A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and ...") |
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Revision as of 17:26, 15 June 2012
| Name: | renal tubule |
|---|---|
| Definition: | "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10] |
| Synonyms: |
"renal tubule (generic)" EXACT [UBERON:cjm] "tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm] |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003914(epithelial tube),UBERON:0006555(excretory tube) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| is a: | UBERON:0001231 (nephron tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009773 (renal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.05e-87 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_ed32da53e975f90ddf85dbdec5fab8d6 | p@chr2:693380..693398, + |
| 1.05e-87 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_ed32da53e975f90ddf85dbdec5fab8d6 | p@chr2:693380..693398, + |
| 1.72e-83 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_5369f4516fe0b23a09f6e08324bd9404 | p4@MEGF11 |
| 1.72e-83 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_5369f4516fe0b23a09f6e08324bd9404 | p4@MEGF11 |
| 2.2e-74 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_a1d73e4b29ded95b5cede6da63d4ddd0 | p7@HOXA10 |
| 2.2e-74 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_a1d73e4b29ded95b5cede6da63d4ddd0 | p7@HOXA10 |
| 7.63e-66 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f16efae389bca4031b8ea7d13e9a80e8 | p@chr1:1100457..1100470, + |
| 7.63e-66 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f16efae389bca4031b8ea7d13e9a80e8 | p@chr1:1100457..1100470, + |
| 6.44e-62 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_333b4f1c8027b8e2cd09ffb5909aad67 | p4@PAX2 |
| 6.44e-62 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_333b4f1c8027b8e2cd09ffb5909aad67 | p4@PAX2 |
| 5.84e-60 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d8cb4aaddbe9f88c3f54a3cc452d52ed | p@chr18:3456189..3456200, + |
| 5.84e-60 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d8cb4aaddbe9f88c3f54a3cc452d52ed | p@chr18:3456189..3456200, + |
| 6.18e-60 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_84528ad193f3d41939899ddc0f53f3e4 | p3@PAX2 |
| 6.18e-60 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_84528ad193f3d41939899ddc0f53f3e4 | p3@PAX2 |
| 4.45e-59 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_46b83b2838af4d63a1a877f59de47756 | p6@LRRN4 |
| 4.45e-59 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_46b83b2838af4d63a1a877f59de47756 | p6@LRRN4 |
| 3.49e-58 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_f4820d0946c534d206fe4bdee17e41d4 | p@chr5:74244100..74244117, + |
| 3.49e-58 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_f4820d0946c534d206fe4bdee17e41d4 | p@chr5:74244100..74244117, + |
| 3.91e-56 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_4c7a7068a3a6f0b40e4b8284ddf16655 | p2@AB527789 |
| 3.91e-56 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_4c7a7068a3a6f0b40e4b8284ddf16655 | p2@AB527789 |
| 3.83e-55 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_f70b0fc3d640b9b0c944cce76816f16c | p@chr16:86604624..86604648, + |
| 3.83e-55 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_f70b0fc3d640b9b0c944cce76816f16c | p@chr16:86604624..86604648, + |
| 3.51e-54 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_3ef965506cdf402c3d15aa488cc699ba | p@chr16:86768403..86768437, + |
| 3.51e-54 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_3ef965506cdf402c3d15aa488cc699ba | p@chr16:86768403..86768437, + |
| 6.09e-53 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_bd9528d5138d577b1a507bb6734c6111 | p2@CLDN6 |
| 6.09e-53 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_bd9528d5138d577b1a507bb6734c6111 | p2@CLDN6 |
| 2.79e-52 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_f15aae7a40b83ff3683873b2a5f5f54f | p1@ENST00000418041, p1@ENST00000443104 |
| 2.79e-52 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_f15aae7a40b83ff3683873b2a5f5f54f | p1@ENST00000418041, p1@ENST00000443104 |
| 1.61e-50 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_c4121a4957a3ac56c11fe8f15de10a71 | p@chr7:7606139..7606151, - |
| 1.61e-50 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_c4121a4957a3ac56c11fe8f15de10a71 | p@chr7:7606139..7606151, - |
| 1.96e-50 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_309c911905a7ba9f8878d0953db65b8f | p3@HNF1B |
| 1.96e-50 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_309c911905a7ba9f8878d0953db65b8f | p3@HNF1B |
| 1.73e-49 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_375c92c40e83c5bf501c4fccb4c437c7 | p@chr7:140227349..140227360, - |
| 1.73e-49 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_375c92c40e83c5bf501c4fccb4c437c7 | p@chr7:140227349..140227360, - |
| 2.61e-49 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_88e41a9ac721db107200f78cec171415 | p16@HOXA10 |
| 2.61e-49 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_88e41a9ac721db107200f78cec171415 | p16@HOXA10 |
| 3.13e-49 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_a6c70e026514c7979da256bb5db20fbc | p2@B3GALT5 |
| 3.13e-49 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_a6c70e026514c7979da256bb5db20fbc | p2@B3GALT5 |
| 4.07e-49 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_997636dc68846103428b3e782f0b06c8 | p4@AIF1L |
| 4.07e-49 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_997636dc68846103428b3e782f0b06c8 | p4@AIF1L |
| 1.12e-47 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_6cae71500f959d1cb03a49779ee09cc7 | p@chr7:140227303..140227330, - |
| 1.12e-47 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_6cae71500f959d1cb03a49779ee09cc7 | p@chr7:140227303..140227330, - |
| 1.23e-44 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_9e3137ed919a4531e0312cf4f796d39e | p3@LRRN4 |
| 1.23e-44 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_9e3137ed919a4531e0312cf4f796d39e | p3@LRRN4 |
| 3.62e-44 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_979585bfa3ec934548d8b4ada87d3be1 | p@chr21:46826248..46826282, - |
| 3.62e-44 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_979585bfa3ec934548d8b4ada87d3be1 | p@chr21:46826248..46826282, - |
| 3.06e-43 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_36507fbdf4aac97cde23684f3c5a8ed7 | p2@LRRN4 |
| 3.06e-43 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_36507fbdf4aac97cde23684f3c5a8ed7 | p2@LRRN4 |
| 1.81e-42 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_25c888b5e27d30134084d522992b82dc | p@chr15:85403302..85403304, + |
| 1.81e-42 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_25c888b5e27d30134084d522992b82dc | p@chr15:85403302..85403304, + |
| 1.82e-42 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_5c607d8ee2b6292fac5059d8885f2793 | p@chr7:98453821..98453843, - |
| 1.82e-42 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_5c607d8ee2b6292fac5059d8885f2793 | p@chr7:98453821..98453843, - |
| 2.77e-42 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_ab4fe2d3fff2475ff33c96c049e7ee20 | p7@LRRN4 |
| 2.77e-42 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_ab4fe2d3fff2475ff33c96c049e7ee20 | p7@LRRN4 |
| 7.5e-42 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_879c202bb6a72cef3f8c9f4f1dd3060d | p2@PAX2 |
| 7.5e-42 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_879c202bb6a72cef3f8c9f4f1dd3060d | p2@PAX2 |
| 3.59e-41 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_5b7113a5ec5096b5c643b318569153aa | p16@TJP2 |
| 3.59e-41 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_5b7113a5ec5096b5c643b318569153aa | p16@TJP2 |
| 9.39e-41 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_c4bccc7984a3614caf45af9f3e2712f3 | p1@ENST00000413103 |
| 9.39e-41 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_c4bccc7984a3614caf45af9f3e2712f3 | p1@ENST00000413103 |
| 1.7e-40 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_0a4647f6510805c3e9f55df468c0be6c | p5@LRRN4 |
| 1.7e-40 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_0a4647f6510805c3e9f55df468c0be6c | p5@LRRN4 |
| 2.9e-40 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_457ca0167e83ae65266ab3e665cd1440 | p2@PLA2G2F |
| 2.9e-40 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_457ca0167e83ae65266ab3e665cd1440 | p2@PLA2G2F |
| 8.58e-40 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_470ac077380ba85164cc2e310a6d24a9 | p3@AIF1L |
| 8.58e-40 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_470ac077380ba85164cc2e310a6d24a9 | p3@AIF1L |
| 1.21e-39 | FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_6e9464182d0eadbc594814bbeb88726c | p6@GALNT14 |
| 1.21e-39 | FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_6e9464182d0eadbc594814bbeb88726c | p6@GALNT14 |
| 3.08e-39 | FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_f49e0ba6b94c99ad1a8ba73605ecca5b | p4@AB527789 |
| 3.08e-39 | FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_f49e0ba6b94c99ad1a8ba73605ecca5b | p4@AB527789 |
| 7.42e-37 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_8345b7c8cba65adfe8e1c95432c12a3e | p4@DCDC2 |
| 7.42e-37 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_8345b7c8cba65adfe8e1c95432c12a3e | p4@DCDC2 |
| 1.29e-36 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_e55efcc4c0fad5763da77f7700713006 | p@chr2:693362..693373, + |
| 1.29e-36 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_e55efcc4c0fad5763da77f7700713006 | p@chr2:693362..693373, + |
| 1.36e-36 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_9891adae8391118c76109b59d7ccb230 | p1@HOXD4 |
| 1.36e-36 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_9891adae8391118c76109b59d7ccb230 | p1@HOXD4 |
| 6.21e-36 | FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_588d0324b905f309263846dd84e0477e | p@chr2:176982078..176982095, + |
| 6.21e-36 | FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_588d0324b905f309263846dd84e0477e | p@chr2:176982078..176982095, + |
| 2.64e-35 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_1da0fdbec5d346dc00d5e03b5b382b18 | p1@AB527789 |
| 2.64e-35 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_1da0fdbec5d346dc00d5e03b5b382b18 | p1@AB527789 |
| 3.85e-35 | FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_97380d04d0d3b58a2c035c8bfce4beea | p3@SULT1C4 |
| 3.85e-35 | FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_97380d04d0d3b58a2c035c8bfce4beea | p3@SULT1C4 |
| 8.14e-35 | FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_494657ccca4a6105e70860b67eb1052e | p4@SIGLEC15 |
| 8.14e-35 | FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_494657ccca4a6105e70860b67eb1052e | p4@SIGLEC15 |
| 1.65e-34 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_5fe4a6a35e2dbbf94ae918606b09c65e | p1@ENST00000444849 |
| 1.65e-34 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_5fe4a6a35e2dbbf94ae918606b09c65e | p1@ENST00000444849 |
| 1.14e-33 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_46f09b8debe74cb09767a71fd8256159 | p@chr17:171147..171161, + |
| 1.14e-33 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_46f09b8debe74cb09767a71fd8256159 | p@chr17:171147..171161, + |
| 1.52e-33 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_08e74c46484fb1c54b85b0100dce2d5b | p2@C14orf105 |
| 1.52e-33 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_08e74c46484fb1c54b85b0100dce2d5b | p2@C14orf105 |
| 1.8e-33 | FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_a6be7f28fa1e99db4b816ebf7d973f6d | p5@GALNT14 |
| 1.8e-33 | FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_a6be7f28fa1e99db4b816ebf7d973f6d | p5@GALNT14 |
| 2.35e-33 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_e8c732358c84713fdef069b809d01e84 | p1@CLDN16 |
| 2.35e-33 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_e8c732358c84713fdef069b809d01e84 | p1@CLDN16 |
| 4.12e-33 | FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_e999852945cdc0bbd8aa74317faf74f0 | p@chr17:36065029..36065045, - |
| 4.12e-33 | FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_e999852945cdc0bbd8aa74317faf74f0 | p@chr17:36065029..36065045, - |
| 8.12e-33 | FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_d44f6e43dee13235e95e7db6eb48048e | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 8.12e-33 | FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_d44f6e43dee13235e95e7db6eb48048e | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 1.25e-32 | FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_16773cd93ca0d19cee46a899739a44d0 | p@chr22:30653574..30653606, - |
| 1.25e-32 | FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_16773cd93ca0d19cee46a899739a44d0 | p@chr22:30653574..30653606, - |
