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Revision as of 17:37, 15 June 2012

Name:mesenchyme condensation cell
Namespace:cell
Definition:"A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors." [GOC:tfm, PMID:5025404]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell)



Children


develops from:CL:0000375 (osteoprogenitor cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000335 (mesenchyme condensation cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619p@chr8:38470503..38470508, +
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619p@chr8:38470503..38470508, +
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733547..36733556, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60ap@chr9:72436290..72436302, -
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60ap@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
6.8e-37FFCP PHASE2:Hg19::chr17:79968522..79968530,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968522..79968530, +
6.8e-37FFCP PHASE2:Hg19::chr11:46326686..46326700,+#_4a330bbe883d851fed699fc1fd379898p@chr11:46326686..46326700, +
6.8e-37FFCP PHASE2:Hg19::chr19:45821324..45821328,-#_4a330bbe883d851fed699fc1fd379898p@chr19:45821324..45821328, -
6.8e-37FFCP PHASE2:Hg19::chr8:134029937..134029944,+#_4a330bbe883d851fed699fc1fd379898p22@TG
6.8e-37FFCP PHASE2:Hg19::chr15:30360639..30360648,-#_4a330bbe883d851fed699fc1fd379898p@chr15:30360639..30360648, -
6.8e-37FFCP PHASE1:Hg19::chr19:28242224..28242230,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28242224..28242230, +
6.8e-37FFCP PHASE2:Hg19::chr6:81435467..81435479,+#_4a330bbe883d851fed699fc1fd379898p@chr6:81435467..81435479, +
6.8e-37FFCP PHASE1:Hg19::chr11:81619863..81619881,+#_4a330bbe883d851fed699fc1fd379898p@chr11:81619863..81619881, +
6.8e-37FFCP PHASE2:Hg19::chr19:28269266..28269269,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28269266..28269269, +
6.8e-37FFCP PHASE1:Hg19::chr3:55016696..55016715,-#_4a330bbe883d851fed699fc1fd379898p@chr3:55016696..55016715, -
6.8e-37FFCP PHASE1:Hg19::chr17:79968522..79968530,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968522..79968530, +
6.8e-37FFCP PHASE2:Hg19::chr17:79966486..79966493,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79966486..79966493, +
6.8e-37FFCP PHASE1:Hg19::chr19:28185172..28185189,-#_4a330bbe883d851fed699fc1fd379898p@chr19:28185172..28185189, -
6.8e-37FFCP PHASE2:Hg19::chr5:86679358..86679365,+#_4a330bbe883d851fed699fc1fd379898p@chr5:86679358..86679365, +
6.8e-37FFCP PHASE2:Hg19::chr4:16020500..16020547,-#_4a330bbe883d851fed699fc1fd379898p@chr4:16020500..16020547, -
6.8e-37FFCP PHASE1:Hg19::chrX:58168137..58168144,-#_4a330bbe883d851fed699fc1fd379898p@chrX:58168137..58168144, -
6.8e-37FFCP PHASE1:Hg19::chr17:79966486..79966493,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79966486..79966493, +
6.8e-37FFCP PHASE1:Hg19::chr8:134029937..134029944,+#_4a330bbe883d851fed699fc1fd379898p22@TG
6.8e-37FFCP PHASE1:Hg19::chr1:21894055..21894060,+#_4a330bbe883d851fed699fc1fd379898p@chr1:21894055..21894060, +
6.8e-37FFCP PHASE2:Hg19::chrX:57930371..57930380,-#_4a330bbe883d851fed699fc1fd379898p@chrX:57930371..57930380, -
6.8e-37FFCP PHASE2:Hg19::chr13:42264908..42264914,-#_4a330bbe883d851fed699fc1fd379898p@chr13:42264908..42264914, -
6.8e-37FFCP PHASE2:Hg19::chr4:88666648..88666655,-#_4a330bbe883d851fed699fc1fd379898p@chr4:88666648..88666655, -
6.8e-37FFCP PHASE2:Hg19::chr17:79967254..79967267,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79967254..79967267, +
6.8e-37FFCP PHASE1:Hg19::chr11:124489771..124489792,+#_4a330bbe883d851fed699fc1fd379898p@chr11:124489771..124489792, +
6.8e-37FFCP PHASE1:Hg19::chr19:28271083..28271089,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28271083..28271089, +
6.8e-37FFCP PHASE1:Hg19::chr13:42264610..42264621,-#_4a330bbe883d851fed699fc1fd379898p@chr13:42264610..42264621, -
6.8e-37FFCP PHASE2:Hg19::chr8:134020899..134020917,-#_4a330bbe883d851fed699fc1fd379898p@chr8:134020899..134020917, -
6.8e-37FFCP PHASE2:Hg19::chr3:55016696..55016715,-#_4a330bbe883d851fed699fc1fd379898p@chr3:55016696..55016715, -
6.8e-37FFCP PHASE2:Hg19::chr11:126573090..126573097,+#_4a330bbe883d851fed699fc1fd379898p@chr11:126573090..126573097, +
6.8e-37FFCP PHASE1:Hg19::chr9:29942046..29942058,+#_4a330bbe883d851fed699fc1fd379898p@chr9:29942046..29942058, +
6.8e-37FFCP PHASE2:Hg19::chr19:28242224..28242230,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28242224..28242230, +
6.8e-37FFCP PHASE2:Hg19::chr20:17519297..17519304,-#_4a330bbe883d851fed699fc1fd379898p@chr20:17519297..17519304, -
6.8e-37FFCP PHASE1:Hg19::chr4:88666648..88666655,-#_4a330bbe883d851fed699fc1fd379898p@chr4:88666648..88666655, -
6.8e-37FFCP PHASE1:Hg19::chr17:79967254..79967267,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79967254..79967267, +
6.8e-37FFCP PHASE2:Hg19::chr17:79965883..79965891,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79965883..79965891, +
6.8e-37FFCP PHASE2:Hg19::chr1:21894055..21894060,+#_4a330bbe883d851fed699fc1fd379898p@chr1:21894055..21894060, +

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