UBERON:0003127: Difference between revisions
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|develops_from= | |develops_from= | ||
Latest revision as of 17:03, 26 June 2012
| Name: | open tracheal system trachea | ||
|---|---|---|---|
| Definition: | "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea] | ||
| Xrefs: |
| ||
| Synonyms: |
"invertebrate trachea" EXACT [] "trachea" BROAD SENSU [FBbt:00005043] | ||
| Comments: | TODO check if is_a epithelium | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001005(respiratory airway) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003127 (open tracheal system trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:180017253..180017257,-#_38310d6b9312bacc82fd954284e7a35c | p@chr5:180017253..180017257, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:180017253..180017257,-#_38310d6b9312bacc82fd954284e7a35c | p@chr5:180017253..180017257, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr5:180017205..180017215,-#_80ee2a6d011379b97eb48f4b8920d8cd | p@chr5:180017205..180017215, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr5:180017205..180017215,-#_80ee2a6d011379b97eb48f4b8920d8cd | p@chr5:180017205..180017215, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr20:31611311..31611316,+#_a2161ed8f9b1c1c4b66a2332808191f1 | p11@BPIFB6 |
| 8.99e-131 | FFCP PHASE2:Hg19::chr20:31611311..31611316,+#_a2161ed8f9b1c1c4b66a2332808191f1 | p11@BPIFB6 |
| 1.75e-130 | FFCP PHASE1:Hg19::chr10:23721618..23721620,+#_decf0c1393aac404ade3a6451846a2b8 | p@chr10:23721618..23721620, + |
| 1.75e-130 | FFCP PHASE2:Hg19::chr10:23721618..23721620,+#_decf0c1393aac404ade3a6451846a2b8 | p@chr10:23721618..23721620, + |
| 1.75e-130 | FFCP PHASE2:Hg19::chr17:70023350..70023353,-#_decf0c1393aac404ade3a6451846a2b8 | p@chr17:70023350..70023353, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr16:57200962..57200982,-#_decf0c1393aac404ade3a6451846a2b8 | p@chr16:57200962..57200982, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr17:70023350..70023353,-#_decf0c1393aac404ade3a6451846a2b8 | p@chr17:70023350..70023353, - |
| 1.75e-130 | FFCP PHASE2:Hg19::chr16:57200962..57200982,-#_decf0c1393aac404ade3a6451846a2b8 | p@chr16:57200962..57200982, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr12:10998450..10998451,+#_1ecedc200b36459be30b8828a90e6cbb | p@chr12:10998450..10998451, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chr12:10998450..10998451,+#_1ecedc200b36459be30b8828a90e6cbb | p@chr12:10998450..10998451, + |
| 9.38e-99 | FFCP PHASE2:Hg19::chr16:83837409..83837435,-#_9764793f260f22922721a357cf10e23a | p@chr16:83837409..83837435, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr16:83837409..83837435,-#_9764793f260f22922721a357cf10e23a | p@chr16:83837409..83837435, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:29082860..29082866,-#_e9ebe19e72782050c5f89e354a3bf796 | p2@ENST00000549742 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112521387..112521398,+#_e9ebe19e72782050c5f89e354a3bf796 | p2@ENST00000519700 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:36191669..36191680,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr13:36191669..36191680, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:36308334..36308341,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr18:36308334..36308341, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:31823292..31823295,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:31823292..31823295, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:56562819..56562826,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:56562819..56562826, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:82555201..82555210,+#_e9ebe19e72782050c5f89e354a3bf796 | p5@FAM154B |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:168808636..168808640,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr1:168808636..168808640, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:16125001..16125013,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr4:16125001..16125013, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:31873942..31873945,+#_e9ebe19e72782050c5f89e354a3bf796 | p16@BPIFB1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:31889078..31889083,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:31889078..31889083, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:78021251..78021260,-#_e9ebe19e72782050c5f89e354a3bf796 | p8@SPTLC2 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:3378254..3378263,-#_e9ebe19e72782050c5f89e354a3bf796 | p27@SLC22A23 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:61897065..61897090,+#_e9ebe19e72782050c5f89e354a3bf796 | p9@IPO11 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:180017106..180017107,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr5:180017106..180017107, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:36191669..36191680,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr13:36191669..36191680, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:79302945..79302964,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr9:79302945..79302964, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:182286732..182286752,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr1:182286732..182286752, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:47708489..47708493,-#_e9ebe19e72782050c5f89e354a3bf796 | p1@ENST00000446733 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:1247457..1247468,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr11:1247457..1247468, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35563541..35563550,-#_e9ebe19e72782050c5f89e354a3bf796 | p5@FAM166B |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:58533512..58533522,+#_e9ebe19e72782050c5f89e354a3bf796 | p6@CDH26 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:31823292..31823295,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:31823292..31823295, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55137687..55137694,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr12:55137687..55137694, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:82555201..82555210,+#_e9ebe19e72782050c5f89e354a3bf796 | p5@FAM154B |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:55137687..55137694,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr12:55137687..55137694, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:56562819..56562826,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:56562819..56562826, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:1247457..1247468,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr11:1247457..1247468, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:48422304..48422310,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr4:48422304..48422310, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:16125001..16125013,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr4:16125001..16125013, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:1276056..1276069,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr11:1276056..1276069, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112521387..112521398,+#_e9ebe19e72782050c5f89e354a3bf796 | p2@ENST00000519700 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:31873942..31873945,+#_e9ebe19e72782050c5f89e354a3bf796 | p16@BPIFB1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:180017106..180017107,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr5:180017106..180017107, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:3378254..3378263,-#_e9ebe19e72782050c5f89e354a3bf796 | p27@SLC22A23 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:61897065..61897090,+#_e9ebe19e72782050c5f89e354a3bf796 | p9@IPO11 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55137725..55137730,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr12:55137725..55137730, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:79302945..79302964,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr9:79302945..79302964, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:55137725..55137730,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr12:55137725..55137730, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35563541..35563550,-#_e9ebe19e72782050c5f89e354a3bf796 | p5@FAM166B |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:182286732..182286752,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr1:182286732..182286752, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:47708489..47708493,-#_e9ebe19e72782050c5f89e354a3bf796 | p1@ENST00000446733 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:29082860..29082866,-#_e9ebe19e72782050c5f89e354a3bf796 | p2@ENST00000549742 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58533512..58533522,+#_e9ebe19e72782050c5f89e354a3bf796 | p6@CDH26 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:168808636..168808640,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr1:168808636..168808640, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:31889078..31889083,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr20:31889078..31889083, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:36308334..36308341,-#_e9ebe19e72782050c5f89e354a3bf796 | p@chr18:36308334..36308341, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:1276056..1276069,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr11:1276056..1276069, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:78021251..78021260,-#_e9ebe19e72782050c5f89e354a3bf796 | p8@SPTLC2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:48422304..48422310,+#_e9ebe19e72782050c5f89e354a3bf796 | p@chr4:48422304..48422310, + |
| 2.56e-98 | FFCP PHASE1:Hg19::chr11:1251248..1251255,+#_7b72acb4ad152b18e278e54cc5f13906 | p@chr11:1251248..1251255, + |
| 2.56e-98 | FFCP PHASE2:Hg19::chr11:1251248..1251255,+#_7b72acb4ad152b18e278e54cc5f13906 | p@chr11:1251248..1251255, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr2:180524914..180524925,-#_d315f5baae6d1cf3f12f0b95bd2ce01c | p17@ZNF385B |
| 1.05e-79 | FFCP PHASE2:Hg19::chr5:180017672..180017683,-#_d315f5baae6d1cf3f12f0b95bd2ce01c | p11@SCGB3A1 |
| 1.05e-79 | FFCP PHASE2:Hg19::chr2:180524914..180524925,-#_d315f5baae6d1cf3f12f0b95bd2ce01c | p17@ZNF385B |
| 1.05e-79 | FFCP PHASE1:Hg19::chr5:180017672..180017683,-#_d315f5baae6d1cf3f12f0b95bd2ce01c | p11@SCGB3A1 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr3:182983174..182983185,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p30@B3GNT5 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr6:10691162..10691202,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr6:10691162..10691202, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr6:139135648..139135664,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p3@ECT2L |
| 2.34e-79 | FFCP PHASE1:Hg19::chr20:31897630..31897644,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:31897630..31897644, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr3:182983174..182983185,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p30@B3GNT5 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr20:44171301..44171317,-#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:44171301..44171317, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr20:31887696..31887715,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:31887696..31887715, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr14:29082844..29082855,-#_d4b3074754dd0a9a2fedfa16f5f61979 | p1@ENST00000549742 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr6:139135648..139135664,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p3@ECT2L |
| 2.34e-79 | FFCP PHASE1:Hg19::chr20:44171301..44171317,-#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:44171301..44171317, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr6:10691162..10691202,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr6:10691162..10691202, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr14:29082844..29082855,-#_d4b3074754dd0a9a2fedfa16f5f61979 | p1@ENST00000549742 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr20:31887696..31887715,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:31887696..31887715, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr20:31897630..31897644,+#_d4b3074754dd0a9a2fedfa16f5f61979 | p@chr20:31897630..31897644, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr11:1249793..1249803,+#_be52b93cc82e70608fa5746610f4208f | p25@MUC5B |
| 3.49e-79 | FFCP PHASE2:Hg19::chr11:1249793..1249803,+#_be52b93cc82e70608fa5746610f4208f | p25@MUC5B |
| 7.41e-67 | FFCP PHASE2:Hg19::chr20:44171371..44171387,-#_fc6b1634d0d7b19ab213fe1064185f05 | p@chr20:44171371..44171387, - |
| 7.41e-67 | FFCP PHASE1:Hg19::chr20:44171371..44171387,-#_fc6b1634d0d7b19ab213fe1064185f05 | p@chr20:44171371..44171387, - |
| 1.45e-66 | FFCP PHASE1:Hg19::chr7:31553698..31553709,+#_3d64abf089f35f6c405f77e74e44447d | p2@CCDC129 |
| 1.45e-66 | FFCP PHASE1:Hg19::chr9:140331478..140331491,-#_3d64abf089f35f6c405f77e74e44447d | p@chr9:140331478..140331491, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr18:24804022..24804043,+#_3d64abf089f35f6c405f77e74e44447d | p@chr18:24804022..24804043, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr18:24804022..24804043,+#_3d64abf089f35f6c405f77e74e44447d | p@chr18:24804022..24804043, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr11:1283125..1283153,+#_3d64abf089f35f6c405f77e74e44447d | p@chr11:1283125..1283153, + |
| 1.45e-66 | FFCP PHASE2:Hg19::chr9:140331458..140331471,-#_3d64abf089f35f6c405f77e74e44447d | p@chr9:140331458..140331471, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr11:1283125..1283153,+#_3d64abf089f35f6c405f77e74e44447d | p@chr11:1283125..1283153, + |
| 1.45e-66 | FFCP PHASE2:Hg19::chr7:31553698..31553709,+#_3d64abf089f35f6c405f77e74e44447d | p2@CCDC129 |
| 1.45e-66 | FFCP PHASE2:Hg19::chr9:140331478..140331491,-#_3d64abf089f35f6c405f77e74e44447d | p@chr9:140331478..140331491, - |
| 1.45e-66 | FFCP PHASE1:Hg19::chr9:140331458..140331471,-#_3d64abf089f35f6c405f77e74e44447d | p@chr9:140331458..140331471, - |
