UBERON:0004536: Difference between revisions
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|def="A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] | |def="A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] | ||
|xref=FMA:63815;;ZFA:0005105 | |xref=FMA:63815;;TAO:0005105;;ZFA:0005105 | ||
|is_a=UBERON:0002049 | |is_a=UBERON:0002049 | ||
|synonym="lymphatic trunks and ducts" EXACT [FMA:63815];;"lymphatic vasculature" EXACT [];;"lymphatic vessel network" EXACT [];;"lymphatic vessels set" EXACT [FMA:63815];;"set of lymphatic vessels" EXACT [];;"trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA] | |synonym="lymphatic trunks and ducts" EXACT [FMA:63815];;"lymphatic vasculature" EXACT [];;"lymphatic vessel network" EXACT [];;"lymphatic vessels set" EXACT [FMA:63815];;"set of lymphatic vessels" EXACT [];;"trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:05, 26 June 2012
| Name: | lymph vasculature | ||
|---|---|---|---|
| Definition: | "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] | ||
| Xrefs: |
| ||
| Synonyms: |
"lymphatic trunks and ducts" EXACT [FMA:63815] "lymphatic vasculature" EXACT [] "lymphatic vessel network" EXACT [] "lymphatic vessels set" EXACT [FMA:63815] "set of lymphatic vessels" EXACT [] "trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002049(vasculature) |
|---|
Children
| part of: | UBERON:0001473 (lymphatic vessel) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 11506-119G3 (Fibroblast - Lymphatic, donor1)
- 11586-120G2 (Fibroblast - Lymphatic, donor2)
- 11638-122C9
- 11667-122G2 (Fibroblast - Lymphatic, donor3)
- 11715-123C5
- 11733-123E5
- 12260-130A1 (Lymphatic Endothelial cells response to VEGFC)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004536 (lymph vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-102 | FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_7692df7a2b1b74c9cd002ffc47fd60f2 | p@chr9:13432964..13432971, - |
| 5.05e-102 | FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_7692df7a2b1b74c9cd002ffc47fd60f2 | p@chr9:13432964..13432971, - |
| 4.74e-79 | FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_3c1527a031b8361675bea51a1850b594 | p15@JAK1 |
| 4.74e-79 | FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_3c1527a031b8361675bea51a1850b594 | p15@JAK1 |
| 1.08e-76 | FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_5572ab3e945b54d5ce64e415b76b89fd | p@chr3:30560368..30560379, + |
| 1.08e-76 | FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_5572ab3e945b54d5ce64e415b76b89fd | p@chr3:30560368..30560379, + |
| 6.73e-74 | FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_18b83cea9f8bf3368a5a10b2b7d55b06 | p@chr17:28534912..28534942, - |
| 6.73e-74 | FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_18b83cea9f8bf3368a5a10b2b7d55b06 | p@chr17:28534912..28534942, - |
| 2.1e-68 | FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_78ad7225edffa9dcde1eaabe15b0f377 | p14@EFEMP1 |
| 2.1e-68 | FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_78ad7225edffa9dcde1eaabe15b0f377 | p14@EFEMP1 |
| 1.18e-65 | FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_b0cbb1deb007f46575d0e5420fd6bc57 | p7@PLA2G4C |
| 1.18e-65 | FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_b0cbb1deb007f46575d0e5420fd6bc57 | p7@PLA2G4C |
| 3.64e-64 | FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_a093eb72400f554c02aecf623d2c022f | p@chr6:74848034..74848043, + |
| 3.64e-64 | FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_a093eb72400f554c02aecf623d2c022f | p@chr6:74848034..74848043, + |
| 6.87e-57 | FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_b0c20693481c8d12283f89e55dca3127 | p1@AK126470 |
| 6.87e-57 | FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_b0c20693481c8d12283f89e55dca3127 | p1@AK126470 |
| 9.15e-57 | FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_157949554de2976b011e39421013bcad | p25@CD36 |
| 9.15e-57 | FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_157949554de2976b011e39421013bcad | p25@CD36 |
| 1.06e-56 | FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_34160d7d3108dbe429cb7163382d55fb | p17@PLSCR4 |
| 1.06e-56 | FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_34160d7d3108dbe429cb7163382d55fb | p17@PLSCR4 |
| 1.22e-56 | FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_83784b6ea1464a695ad60dd41b082f4b | p17@RASGRP3 |
| 1.22e-56 | FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_83784b6ea1464a695ad60dd41b082f4b | p17@RASGRP3 |
| 1.41e-56 | FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_2df8a28bedfa78be0700991c1d81a225 | p2@ENST00000428006 |
| 1.41e-56 | FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_2df8a28bedfa78be0700991c1d81a225 | p2@ENST00000428006 |
| 4.57e-56 | FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_89be3d0ace8e87168a44bc609da33743 | p@chr17:28534879..28534889, - |
| 4.57e-56 | FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_89be3d0ace8e87168a44bc609da33743 | p@chr12:46807404..46807413, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_89be3d0ace8e87168a44bc609da33743 | p@chr17:28534879..28534889, - |
| 4.57e-56 | FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_89be3d0ace8e87168a44bc609da33743 | p@chr12:46807404..46807413, + |
| 6.66e-56 | FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_da82e7a615192c217d8dac2a5e88f66b | p26@CD36 |
| 6.66e-56 | FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_da82e7a615192c217d8dac2a5e88f66b | p26@CD36 |
| 2.32e-54 | FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_3673059bdf1e330a7e5c0e8056edbb07 | p10@RBPMS |
| 2.32e-54 | FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_3673059bdf1e330a7e5c0e8056edbb07 | p10@RBPMS |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr11:108794408..108794422, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr17:75873825..75873826, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr11:108794429..108794441, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_6ea3758d7ed69c35c70a63deb22400a3 | p58@ANK2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_6ea3758d7ed69c35c70a63deb22400a3 | p58@ANK2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_6ea3758d7ed69c35c70a63deb22400a3 | p54@PDE4B |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_6ea3758d7ed69c35c70a63deb22400a3 | p23@RASGRP3 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_6ea3758d7ed69c35c70a63deb22400a3 | p54@PDE4B |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_6ea3758d7ed69c35c70a63deb22400a3 | p23@RASGRP3 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr11:108794408..108794422, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr11:108794429..108794441, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_6ea3758d7ed69c35c70a63deb22400a3 | p@chr17:75873825..75873826, + |
| 9.58e-48 | FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_f7e7251295406c639301573fc9c54d67 | p@chr4:189881560..189881604, - |
| 9.58e-48 | FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_f7e7251295406c639301573fc9c54d67 | p@chr4:189881560..189881604, - |
| 1.55e-47 | FFCP PHASE1:Hg19::chr4:90857427..90857438,+#_a1d97d0be108b7158c51784ca8f7913d | p@chr4:90857427..90857438, + |
| 1.55e-47 | FFCP PHASE2:Hg19::chr4:90857427..90857438,+#_a1d97d0be108b7158c51784ca8f7913d | p@chr4:90857427..90857438, + |
| 1.71e-47 | FFCP PHASE2:Hg19::chr10:4823152..4823165,-#_a56ba58c4aacbd3c540add197a45d03a | p@chr10:4823152..4823165, - |
| 1.71e-47 | FFCP PHASE1:Hg19::chr10:4823152..4823165,-#_a56ba58c4aacbd3c540add197a45d03a | p@chr10:4823152..4823165, - |
| 3.05e-47 | FFCP PHASE1:Hg19::chr6:49534004..49534016,+#_1f29b0a9ee91582f5c3373bc7eb56ac8 | p@chr6:49534004..49534016, + |
| 3.05e-47 | FFCP PHASE2:Hg19::chr6:49534004..49534016,+#_1f29b0a9ee91582f5c3373bc7eb56ac8 | p@chr6:49534004..49534016, + |
| 7.08e-47 | FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_1263577bac1d22327bb3890beb7161de | p@chr12:96841308..96841312, + |
| 7.08e-47 | FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_1263577bac1d22327bb3890beb7161de | p@chr12:96841308..96841312, + |
| 3.73e-45 | FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_5664f186480fa8661aed98a5beb505f4 | p6@HYI |
| 3.73e-45 | FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_5664f186480fa8661aed98a5beb505f4 | p6@HYI |
| 4.34e-45 | FFCP PHASE1:Hg19::chr3:34262215..34262222,+#_0c16c45d68198428983e62dc29d3f317 | p@chr3:34262215..34262222, + |
| 4.34e-45 | FFCP PHASE2:Hg19::chr3:34262215..34262222,+#_0c16c45d68198428983e62dc29d3f317 | p@chr3:34262215..34262222, + |
| 5.04e-45 | FFCP PHASE1:Hg19::chr18:54339814..54339822,+#_3b7d658503ae88c295c8cdce8002eb65 | p7@WDR7 |
| 5.04e-45 | FFCP PHASE2:Hg19::chr18:54339814..54339822,+#_3b7d658503ae88c295c8cdce8002eb65 | p7@WDR7 |
| 6.81e-45 | FFCP PHASE1:Hg19::chr7:10196589..10196595,-#_3dad64e8512018cfc355107866a66be3 | p@chr7:10196589..10196595, - |
| 6.81e-45 | FFCP PHASE2:Hg19::chr7:10196589..10196595,-#_3dad64e8512018cfc355107866a66be3 | p@chr7:10196589..10196595, - |
| 7.92e-45 | FFCP PHASE1:Hg19::chr2:62705562..62705579,+#_81d3f821c0d230f258c74babee14151c | p@chr2:62705562..62705579, + |
| 7.92e-45 | FFCP PHASE2:Hg19::chr2:62705562..62705579,+#_81d3f821c0d230f258c74babee14151c | p@chr2:62705562..62705579, + |
| 3.69e-44 | FFCP PHASE2:Hg19::chr12:71031281..71031292,-#_9d6853c5a5bb7152fe9186b17da6cbbf | p12@PTPRB |
| 3.69e-44 | FFCP PHASE1:Hg19::chr12:71031281..71031292,-#_9d6853c5a5bb7152fe9186b17da6cbbf | p12@PTPRB |
| 3.69e-44 | FFCP PHASE1:Hg19::chr4:90856951..90856962,+#_9d6853c5a5bb7152fe9186b17da6cbbf | p@chr4:90856951..90856962, + |
| 3.69e-44 | FFCP PHASE2:Hg19::chr4:90856951..90856962,+#_9d6853c5a5bb7152fe9186b17da6cbbf | p@chr4:90856951..90856962, + |
| 3.18e-40 | FFCP PHASE2:Hg19::chr12:105882068..105882076,+#_360c7932324edd50696b542972c9e6f8 | p@chr12:105882068..105882076, + |
| 3.18e-40 | FFCP PHASE1:Hg19::chr12:105882068..105882076,+#_360c7932324edd50696b542972c9e6f8 | p@chr12:105882068..105882076, + |
| 3.89e-40 | FFCP PHASE1:Hg19::chr8:6459787..6459796,+#_efe65bdedc5b6303b5eaff7e781cb0f8 | p@chr8:6459787..6459796, + |
| 3.89e-40 | FFCP PHASE2:Hg19::chr8:6459787..6459796,+#_efe65bdedc5b6303b5eaff7e781cb0f8 | p@chr8:6459787..6459796, + |
| 1.55e-39 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_6a61cee4850ddfaf113dd1960620a2f4 | p@chr4:38057595..38057624, - |
| 1.55e-39 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_6a61cee4850ddfaf113dd1960620a2f4 | p@chr4:38057595..38057624, - |
| 6.2e-39 | FFCP PHASE1:Hg19::chr3:194868639..194868654,+#_80087c27c49e65e97fe7ac7f16c05be3 | p1@ENST00000426468 |
| 6.2e-39 | FFCP PHASE2:Hg19::chr3:194868639..194868654,+#_80087c27c49e65e97fe7ac7f16c05be3 | p1@ENST00000426468 |
| 9.18e-38 | FFCP PHASE2:Hg19::chr8:16425014..16425019,-#_1b36d3035ef1e16003801481c6952c11 | p13@MSR1 |
| 9.18e-38 | FFCP PHASE1:Hg19::chr8:16425014..16425019,-#_1b36d3035ef1e16003801481c6952c11 | p13@MSR1 |
| 1.51e-37 | FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_dd93b93daf4898d5bb078cf837e6952e | p3@LOC441179 |
| 1.51e-37 | FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_dd93b93daf4898d5bb078cf837e6952e | p3@LOC441179 |
| 1.95e-37 | FFCP PHASE1:Hg19::chr2:27487913..27487933,-#_3c232d88b1ba0d1bfeb2dc9bd7db7bd6 | p@chr2:27487913..27487933, - |
| 1.95e-37 | FFCP PHASE2:Hg19::chr2:27487913..27487933,-#_3c232d88b1ba0d1bfeb2dc9bd7db7bd6 | p@chr2:27487913..27487933, - |
| 5.85e-37 | FFCP PHASE1:Hg19::chr8:6420777..6420779,-#_1a9067c809e422232cb9807ff0934b76 | p5@ANGPT2 |
| 5.85e-37 | FFCP PHASE2:Hg19::chr8:6420777..6420779,-#_1a9067c809e422232cb9807ff0934b76 | p5@ANGPT2 |
| 1.23e-36 | FFCP PHASE1:Hg19::chr6:168195926..168195943,+#_16b5e16e3868b5bd29dd847a04fe7ad4 | p1@LOC441179 |
| 1.23e-36 | FFCP PHASE2:Hg19::chr6:168195926..168195943,+#_16b5e16e3868b5bd29dd847a04fe7ad4 | p1@LOC441179 |
| 1.33e-36 | FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_a53138f965f7a989e07c54f872d17564 | p8@EXOC6 |
| 1.33e-36 | FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_a53138f965f7a989e07c54f872d17564 | p8@EXOC6 |
| 5.59e-36 | FFCP PHASE2:Hg19::chr8:16425043..16425061,-#_a7bdb902e77ad6d64b8d40d48daba7ae | p5@MSR1 |
| 5.59e-36 | FFCP PHASE1:Hg19::chr8:16425043..16425061,-#_a7bdb902e77ad6d64b8d40d48daba7ae | p5@MSR1 |
| 1.86e-34 | FFCP PHASE1:Hg19::chr17:79426425..79426444,+#_9a8d4568fc4a9a8b6d7937e868315c9f | p@chr17:79426425..79426444, + |
| 1.86e-34 | FFCP PHASE2:Hg19::chr17:79426425..79426444,+#_9a8d4568fc4a9a8b6d7937e868315c9f | p@chr17:79426425..79426444, + |
| 3.14e-34 | FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_2ec3f9d97f49125ff2dcde4110517a08 | p@chr11:57543275..57543296, + |
| 3.14e-34 | FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_2ec3f9d97f49125ff2dcde4110517a08 | p@chr11:57543275..57543296, + |
| 2.31e-33 | FFCP PHASE1:Hg19::chr19:45226133..45226157,-#_14b4e887395f1e7c8e7253f1eefd074a | p@chr19:45226133..45226157, - |
| 2.31e-33 | FFCP PHASE2:Hg19::chr19:45226133..45226157,-#_14b4e887395f1e7c8e7253f1eefd074a | p@chr19:45226133..45226157, - |
| 2.61e-33 | FFCP PHASE1:Hg19::chr3:159570877..159570888,+#_f0e5e46a80bd4c5212d5583cf3017544 | p43@SCHIP1 |
| 2.61e-33 | FFCP PHASE2:Hg19::chr3:159570877..159570888,+#_f0e5e46a80bd4c5212d5583cf3017544 | p43@SCHIP1 |
| 7.63e-33 | FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_c09119739bba43f21bd52ca259003eaf | p10@PTPRB |
| 7.63e-33 | FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_c09119739bba43f21bd52ca259003eaf | p10@PTPRB |
