UBERON:0001875: Difference between revisions
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|part_of= | |part_of=UBERON:0001869;;UBERON:0002420;;UBERON:0006514 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:29, 27 June 2012
| Name: | globus pallidus | ||
|---|---|---|---|
| Definition: | "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle[NIF]. Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA]." [FMA:61835, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] | ||
| Xrefs: |
| ||
| Synonyms: |
"pale body" EXACT [NIF_GrossAnatomy:birnlex_1234] "paleostriatum" EXACT [Wikipedia:Globus_pallidus] "pallidium" RELATED [Wikipedia:Globus_pallidus] "pallidum" RELATED [GO:0021759, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] | ||
| Comments: | BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus | ||
| Alt_id: | UBERON:FMA_61835-MA_0000890 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009663(telencephalic nucleus),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001869(cerebral hemisphere),UBERON:0002420(basal ganglion),UBERON:0006514(pallidum) |
Children
| is a: | FF:10364-105F4 (globus pallidus, newborn, donor10223),FF:10367-105F7 (globus pallidus, adult, donor10258) |
|---|---|
| derives from: | FF:0010161 (human globus pallidus - adult donor sample) |
| part of: | FF:0010161 (human globus pallidus - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10364-105F4 (globus pallidus, newborn, donor10223)
- 10367-105F7 (globus pallidus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001875 (globus pallidus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_5ffd25a21571ddc8e603b656a364cc51 | p1@GNRH1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_5ffd25a21571ddc8e603b656a364cc51 | p1@GNRH1 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr8:112039724..112039729,-#_0f68adc1a9e33584d35848e013f238c5 | p5@ENST00000524283 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_0f68adc1a9e33584d35848e013f238c5 | p@chr4:16728994..16729009, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_0f68adc1a9e33584d35848e013f238c5 | p@chr4:16728994..16729009, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr8:112039724..112039729,-#_0f68adc1a9e33584d35848e013f238c5 | p5@ENST00000524283 |
| 5.22e-79 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_7ea86f22c76a3e358be4bf0d4f6330c8 | p4@C5orf64 |
| 5.22e-79 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_7ea86f22c76a3e358be4bf0d4f6330c8 | p4@C5orf64 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr8:53314470..53314473,-#_c0c534f04cc23e7754c6be104e9e1f7e | p@chr8:53314470..53314473, - |
| 2.84e-66 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_c0c534f04cc23e7754c6be104e9e1f7e | p@chr8:57353676..57353688, - |
| 2.84e-66 | FFCP PHASE2:Hg19::chr8:53314470..53314473,-#_c0c534f04cc23e7754c6be104e9e1f7e | p@chr8:53314470..53314473, - |
| 2.84e-66 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_c0c534f04cc23e7754c6be104e9e1f7e | p@chr8:57353676..57353688, - |
| 3.58e-57 | FFCP PHASE1:Hg19::chr12:57979084..57979088,+#_97445cac8fbeccadbabc7d36d071d298 | p5@uc001sos.2 |
| 3.58e-57 | FFCP PHASE2:Hg19::chr12:57979084..57979088,+#_97445cac8fbeccadbabc7d36d071d298 | p5@uc001sos.2 |
| 4.77e-57 | FFCP PHASE2:Hg19::chr14:68030467..68030470,+#_1751681cf0b92c592eeaa092c87587db | p@chr14:68030467..68030470, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr14:68030467..68030470,+#_1751681cf0b92c592eeaa092c87587db | p@chr14:68030467..68030470, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_0d9bcc4f91c82cf1df00ca7d2f6dd793 | p@chr2:234077664..234077672, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_0d9bcc4f91c82cf1df00ca7d2f6dd793 | p@chr2:234077664..234077672, + |
| 2.0e-56 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_73976d7db5dd33b9574ec17c4f2e6759 | p@chr2:7112752..7112770, + |
| 2.0e-56 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_73976d7db5dd33b9574ec17c4f2e6759 | p3@ENST00000413244 |
| 2.0e-56 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_73976d7db5dd33b9574ec17c4f2e6759 | p@chr2:7112752..7112770, + |
| 2.0e-56 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_73976d7db5dd33b9574ec17c4f2e6759 | p3@ENST00000413244 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:211384439..211384442,+#_7081cf46a8aab02c7f2855097cb1f094 | p@chr2:211384439..211384442, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:211384439..211384442,+#_7081cf46a8aab02c7f2855097cb1f094 | p@chr2:211384439..211384442, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_7ac13d378d6813e55dc8457ed21a684d | p@chr1:65776926..65776928, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_7ac13d378d6813e55dc8457ed21a684d | p@chr1:65776926..65776928, + |
| 4.0e-50 | FFCP PHASE1:Hg19::chr2:44994986..44994992,-#_97904c09a756f5f630bcda0489ed2634 | p@chr2:44994986..44994992, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chr2:44994986..44994992,-#_97904c09a756f5f630bcda0489ed2634 | p@chr2:44994986..44994992, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:160111883..160111891,+#_ee811d041370937c54b570dfe82fbe24 | p@chr1:160111883..160111891, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:110546475..110546482,+#_ee811d041370937c54b570dfe82fbe24 | p27@AHCYL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:11676048..11676067,-#_ee811d041370937c54b570dfe82fbe24 | p23@THSD7A |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:79843826..79843829,+#_ee811d041370937c54b570dfe82fbe24 | p@chr12:79843826..79843829, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:88473657..88473661,+#_ee811d041370937c54b570dfe82fbe24 | p@chr9:88473657..88473661, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:196731042..196731058,-#_ee811d041370937c54b570dfe82fbe24 | p6@MFI2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:160111883..160111891,+#_ee811d041370937c54b570dfe82fbe24 | p@chr1:160111883..160111891, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:196731042..196731058,-#_ee811d041370937c54b570dfe82fbe24 | p6@MFI2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:2291152..2291163,-#_ee811d041370937c54b570dfe82fbe24 | p@chrX:2291152..2291163, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:79843826..79843829,+#_ee811d041370937c54b570dfe82fbe24 | p@chr12:79843826..79843829, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:88473657..88473661,+#_ee811d041370937c54b570dfe82fbe24 | p@chr9:88473657..88473661, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:16729019..16729026,+#_ee811d041370937c54b570dfe82fbe24 | p@chr4:16729019..16729026, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:110546475..110546482,+#_ee811d041370937c54b570dfe82fbe24 | p27@AHCYL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:2291152..2291163,-#_ee811d041370937c54b570dfe82fbe24 | p@chrX:2291152..2291163, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:16729019..16729026,+#_ee811d041370937c54b570dfe82fbe24 | p@chr4:16729019..16729026, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:11676048..11676067,-#_ee811d041370937c54b570dfe82fbe24 | p23@THSD7A |
| 5.15e-50 | FFCP PHASE2:Hg19::chr15:30305145..30305156,+#_cb4464797b966dd23c69bc725cde8e82 | p@chr15:30305145..30305156, + |
| 5.15e-50 | FFCP PHASE1:Hg19::chr15:30305145..30305156,+#_cb4464797b966dd23c69bc725cde8e82 | p@chr15:30305145..30305156, + |
| 8.5e-50 | FFCP PHASE2:Hg19::chr20:45062233..45062265,+#_10699a72cb2e235f6b2369491de39693 | p1@AK054905 |
| 8.5e-50 | FFCP PHASE1:Hg19::chr20:45062233..45062265,+#_10699a72cb2e235f6b2369491de39693 | p1@AK054905 |
| 1.09e-49 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_2ad8cf299a2c68ee626fdf4764e18a1f | p10@PTPN5 |
| 1.09e-49 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_2ad8cf299a2c68ee626fdf4764e18a1f | p10@PTPN5 |
| 2.04e-45 | FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_4aa7188410aab400f19e2d752e3cc5c9 | p@chr3:42687264..42687266, - |
| 2.04e-45 | FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_4aa7188410aab400f19e2d752e3cc5c9 | p@chr3:42687264..42687266, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr7:92123292..92123295,+#_ecd0f8e1ed639fe3205d8f78e052e67a | p@chr7:92123292..92123295, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:109924481..109924486,-#_ecd0f8e1ed639fe3205d8f78e052e67a | p@chr1:109924481..109924486, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr4:648979..648991,-#_ecd0f8e1ed639fe3205d8f78e052e67a | p1@ENST00000489312 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr4:648979..648991,-#_ecd0f8e1ed639fe3205d8f78e052e67a | p1@ENST00000489312 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:109924481..109924486,-#_ecd0f8e1ed639fe3205d8f78e052e67a | p@chr1:109924481..109924486, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr7:92123292..92123295,+#_ecd0f8e1ed639fe3205d8f78e052e67a | p@chr7:92123292..92123295, + |
| 9.79e-45 | FFCP PHASE1:Hg19::chr8:53313114..53313126,-#_89650411177b2e3967c4cb679ce5486d | p@chr8:53313114..53313126, - |
| 9.79e-45 | FFCP PHASE2:Hg19::chr8:53313114..53313126,-#_89650411177b2e3967c4cb679ce5486d | p@chr8:53313114..53313126, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr8:53312268..53312283,-#_62b25f9dc82d426f2f181562ba82c350 | p@chr8:53312268..53312283, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_62b25f9dc82d426f2f181562ba82c350 | p@chr7:67899920..67899958, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_62b25f9dc82d426f2f181562ba82c350 | p@chr3:16851273..16851310, + |
| 1.22e-44 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_62b25f9dc82d426f2f181562ba82c350 | p@chr3:16851273..16851310, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_62b25f9dc82d426f2f181562ba82c350 | p@chr7:67899920..67899958, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr8:53312268..53312283,-#_62b25f9dc82d426f2f181562ba82c350 | p@chr8:53312268..53312283, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_e7e421d10bd7578130b5e3a9c75a9079 | p5@ANO3 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_e7e421d10bd7578130b5e3a9c75a9079 | p5@ANO3 |
| 1.53e-44 | FFCP PHASE1:Hg19::chrX:119589796..119589800,-#_e7e421d10bd7578130b5e3a9c75a9079 | p@chrX:119589796..119589800, - |
| 1.53e-44 | FFCP PHASE2:Hg19::chrX:119589796..119589800,-#_e7e421d10bd7578130b5e3a9c75a9079 | p@chrX:119589796..119589800, - |
| 1.91e-44 | FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_9085eda856dad496bfe09dcc76960bfd | p4@ENST00000458087, p4@uc003tew.1 |
| 1.91e-44 | FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_9085eda856dad496bfe09dcc76960bfd | p4@ENST00000515519 |
| 1.91e-44 | FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_9085eda856dad496bfe09dcc76960bfd | p4@ENST00000515519 |
| 1.91e-44 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_9085eda856dad496bfe09dcc76960bfd | p@chr17:19390234..19390251, + |
| 1.91e-44 | FFCP PHASE1:Hg19::chr9:139907538..139907555,-#_9085eda856dad496bfe09dcc76960bfd | p25@ABCA2 |
| 1.91e-44 | FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_9085eda856dad496bfe09dcc76960bfd | p4@ENST00000458087, p4@uc003tew.1 |
| 1.91e-44 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_9085eda856dad496bfe09dcc76960bfd | p@chr17:19390234..19390251, + |
| 1.91e-44 | FFCP PHASE2:Hg19::chr9:139907538..139907555,-#_9085eda856dad496bfe09dcc76960bfd | p25@ABCA2 |
| 2.98e-44 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_1b101a36b2249208887a673e87f632b9 | p28@ARPP21 |
| 2.98e-44 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_1b101a36b2249208887a673e87f632b9 | p28@ARPP21 |
| 2.98e-44 | FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_1b101a36b2249208887a673e87f632b9 | p8@SEMA3B |
| 2.98e-44 | FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_1b101a36b2249208887a673e87f632b9 | p8@SEMA3B |
| 1.34e-40 | FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_89db5c919cec3d4b813ad65b311b9285 | p@chr19:35789028..35789044, + |
| 1.34e-40 | FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_89db5c919cec3d4b813ad65b311b9285 | p@chr19:35789028..35789044, + |
| 2.01e-40 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_3b1fab377a1a4c8c2e4b5cfe25dd2b89 | p@chr6:166076645..166076657, - |
| 2.01e-40 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_3b1fab377a1a4c8c2e4b5cfe25dd2b89 | p@chr6:166076645..166076657, - |
| 2.46e-40 | FFCP PHASE2:Hg19::chr16:51302023..51302029,-#_65e0c612ae2156b16595a5d89798aec5 | p@chr16:51302023..51302029, - |
| 2.46e-40 | FFCP PHASE1:Hg19::chr16:51302023..51302029,-#_65e0c612ae2156b16595a5d89798aec5 | p@chr16:51302023..51302029, - |
| 3.01e-40 | FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_f4e1329758013b06fa259de4d6aa6d4e | p@chr11:119846813..119846826, + |
| 3.01e-40 | FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_f4e1329758013b06fa259de4d6aa6d4e | p@chr11:119846813..119846826, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_8be75ad4494dbb0fa4811b16c94222fe | p6@PTPN5 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_8be75ad4494dbb0fa4811b16c94222fe | p6@PTPN5 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_8be75ad4494dbb0fa4811b16c94222fe | p2@ENST00000413244 |
| 3.68e-40 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_8be75ad4494dbb0fa4811b16c94222fe | p2@ENST00000413244 |
| 4.49e-40 | FFCP PHASE2:Hg19::chr22:50431522..50431538,-#_eef6ff007c7205371970f7e8b66754ab | p@chr22:50431522..50431538, - |
| 4.49e-40 | FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_eef6ff007c7205371970f7e8b66754ab | p@chr6:33161034..33161047, - |
| 4.49e-40 | FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_eef6ff007c7205371970f7e8b66754ab | p4@TTLL7 |
| 4.49e-40 | FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_eef6ff007c7205371970f7e8b66754ab | p@chr6:33161034..33161047, - |
| 4.49e-40 | FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_eef6ff007c7205371970f7e8b66754ab | p4@TTLL7 |
| 4.49e-40 | FFCP PHASE1:Hg19::chr22:50431522..50431538,-#_eef6ff007c7205371970f7e8b66754ab | p@chr22:50431522..50431538, - |
