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MacroAPE 1083:Motif GNGAGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;60;0!02;0;0;0;60!03;0;0;60;0!04;60;0;0;0!05;0;0;60;0!06;0;60;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.751329!11327-117E4;0.9924...")
 
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1C9;0.461437!10788-110H5;0.919613!10792-110H9;0.866721!10765-110E9;0.561088!10829-111D1;0.740483!10830-111D2;0.695799!10831-111D3;0.883639!10832-111D4;0.926109!10833-111D5;0.684705!10764-110E8;0.480368!10770-110F5;0.483632!10399-106A3;0.782536!10400-106A4;0.440037!10405-106A9;0.416662!10834-111D6;0.426942!10835-111D7;0.641612!10836-111D8;0.499078!10837-111D9;0.231694!10699-109G6;0.325075!10802-111A1;0.12306!10796-110I4;0.115125!10010-101C1;0.958128!10810-111A9;0.57837!10421-106C7;0.106046!10708-109H6;0.320507!12235-129G3;0.267705!12236-129G4;0.816448!12237-129G5;0.682003!10167-103B5;0.519733!10151-102I7;0.331031!10428-106D5;0.428354!10795-110I3;0.632958!10805-111A4;0.628067!10052-101G7;0.982456!10189-103D9;0.718757!10589-108D4;0.988961!10425-106D2;0.799849!10427-106D4;0.691768!10702-109G9;0.577263!10432-106D9;0.727755!10496-107C1;0.914409!10718-109I7;0.61543!10011-101C2;0.52985!10053-101G8;0.741492!10686-109F2;0.841477!10084-102B3;0.000252026!10012-101C3;0.463965!10085-102B4;0.42688!10482-107A5;0.585655!10419-106C5;0.657664!10080-102A8;0.782442!10760-110E4;0.655662!10709-109H7;0.760379!10710-109H8;0.618136!10703-109H1;0.882665!10719-109I8;0.481904!10642-109A3;0.775854!10177-103C6;0.440691!10164-103B2;0.300567!10173-103C2;0.438081!10166-103B4;0.735647!10083-102B2;0.607332!10188-103D8;0.571795!10552-107I3;0.452474!10553-107I4;0.732146!10013-101C4;0.297603!10536-107G5;0.498066!10618-108G6;0.0217174!10423-106C9;0.833121!10785-110H2;0.666739!12238-129G6;0.739546!12239-129G7;0.58805!12240-129G8;0.973899!10416-106C2;0.494576!10801-110I9;0.916302!10766-110F1;0.380851!10824-111C5;0.368311!10825-111C6;0.85454!10826-111C7;0.851009!10454-106G4;0.900322!10409-106B4;0.698779!10638-108I8;0.336847!10636-108I6;0.932058!10513-107D9;0.406283!10420-106C6;0.692153!10082-102B1;0.509878!10014-101C5;0.919418!10070-101I7;0.882129!10452-106G2;0.924817!10453-106G3;0.265075!10449-106F8;0.244986!10042-101F6;0.28012!10069-101I6;0.615332!10193-103E4;0.595957!10631-108I1;0.47634!10438-106E6;0.620631!10488-107B2;0.988305!10196-103E7;0.381555!10071-101I8;0.214157!10071-101I8;0.83303!10041-101F5;0.570795!10451-106G1;0.793578!10450-106F9;0.731248!10604-108F1;0.505601!10605-108F2;0.0557189!10606-108F3;0.148249!10603-108E9;0.132285!10497-107C2;0.443649!10448-106F7;0.989786!10643-109A4;0.514913!10426-106D3;0.569458!10431-106D8;0.757029!10197-103E8;0.914!10443-106F2;0.356747!10815-111B5;0.112986!10816-111B6;0.32454!10817-111B7;0.258353!10015-101C6;0.314054!10410-106B5;0.711102!10054-101G9;0.901048!10758-110E2;0.75838!10711-109H9;0.296116!10040-101F4;0.205205!10470-106I2;0.442156!10415-106C1;0.517433!10198-103E9;0.806211!10614-108G2;0.656703!10612-108F9;0.422918!10549-107H9;0.994518!10615-108G3;0.338482!10487-107B1;0.632465!10433-106E1;0.907977!10688-109F4;0.81617!10444-106F3;0.54388!10444-106F3;0.179972!10485-107A8;0.267974!10413-106B8;0.00978348!10175-103C4;0.827342!10161-103A8;0.467844!12131-128D7;0.59064!10624-108H3;0.165685!10712-109I1;0.967335!10205-103F7;0.528346!10206-103F8;0.70026!10207-103F9;0.719644!10050-101G5;0.892498!10051-101G6;0.580971!10016-101C7;0.392216!10046-101G1;0.818787!10778-110G4;0.578118!10633-108I3;0.940476!10818-111B8;0.453316!10819-111B9;0.694413!10820-111C1;0.639757!10484-107A7;0.594024!10808-111A7;0.918923!10169-103B7;0.627618!10153-102I9;0.423598!13425-144D5;0.485983!13433-144E4;0.414318!13437-144E8;0.386709!11904-125F5;0.488551!11905-125F6;0.929669!10039-101F3;0.684165!10791-110H8;0.41737!10017-101C8;0.635207!10045-101F9;0.393817!10509-107D5;0.448833!10839-111E2;0.977269!10692-109F8;0.872437!10079-102A7;0.381221!10078-102A6;0.688547!10721-110A1;0.716733!10569-108B2;0.51386!10570-108B3;0.791764!10571-108B4;0.75175!10647-109A8;0.684753!10752-110D5;0.664007!10782-110G8;0.469459!10726-110A6;0.00667834!10018-101C9;0.619269!10086-102B5;0.7676!10182-103D2;0.890937!10165-103B3;0.646672!10499-107C4;0.581561!10408-106B3;0.29787!10019-101D1;0.935556!10068-101I5;0.534531!10075-102A3;0.461704!10077-102A5;0.600932!10727-110A7;0.58758!10775-110G1;0.609623!10412-106B7;0.455754!12231-129F8;0.993077!12232-129F9;0.86333!12233-129G1;0.529773!12234-129G2;0.557462!10414-106B9;0.739285!10170-103B8;0.818081!10183-103D3;0.429658!10150-102I6;0.40665!10174-103C3;0.472474!10155-103A2;0.55659!10038-101F2;0.671205!10838-111E1;0.573452!10759-110E3;0.607157!10514-107E1;0.0497763!10465-106H6;0.792396!10691-109F7;0.90077!10843-111E6;0.963284!10844-111E7;0.429417!11747-123G1;0.849448!11748-123G2;0.637604!11749-123G3;0.802795!11750-123G4;0.930917!11751-123G5;0.883826!11840-124H4;0.646283!11752-123G6;0.547073!11753-123G7;0.832427!11754-123G8;0.554199!11755-123G9;0.844007!11756-123H1;0.125354!11833-124G6;0.767649!11760-123H5;0.356201!11836-124G9;0.335374!11758-123H3;0.584934!11835-124G8;0.972177!11762-123H7;0.188725!11838-124H2;0.1608!11757-123H2;0.791421!11759-123H4;0.359065!11761-123H6;0.742179!11842-124H6;0.0527807!11837-124H1;0.1554!10568-108B1;0.514189!13230-141I8;0.114223!13231-141I9;0.860998!10696-109G3;0.917364!10493-107B7;0.398044!10494-107B8;0.0355333!10850-111F4;0.344014!10851-111F5;0.567914!10852-111F6;0.00168364!10853-111F7;0.0366926!10854-111F8;0.0887795!10855-111F9;0.237493!10856-111G1;0.773768!10847-111F1;0.855001!10846-111E9;0.0204646!10848-111F2;0.380883!10845-111E8;0.774736!10857-111G2;0.542648!10858-111G3;0.838818!10156-103A3;0.229385!11901-125F2;0.486274!11902-125F3;0.565236!11903-125F4;0.565104!10689-109F5;0.598067!10648-109A9;0.28187!10784-110H1;0.785388!10744-110C6;0.762152!10772-110F7;0.480899!10474-106I6;0.275952!10600-108E6;0.875608!10684-109E9;0.0112684!12226-129F3;0.562751!12227-129F4;0.3277!10508-107D4;0.208433!10539-107G8;0.0980811!10607-108F4;0.104913!10555-107I6;0.809869!10774-110F9;0.204067!10637-108I7;0.822856!10663-109C6;0.767572!10728-110A8;0.912817!10729-110A9;0.098392!10430-106D7;0.620525!10730-110B1;0.612215!10813-111B3;0.686711!10812-111B2;0.900729!10037-101F1;0.241888!10172-103C1;0.438938!10163-103B1;0.402137!10076-102A4;0.472754!10073-102A1;0.523068!10036-101E9;0.727582!10195-103E6;0.400681!10277-104E7;0.421578!10434-106E2;0.750036!10550-107I1;0.791319!10545-107H5;0.71835!10544-107H4;0.519599!10704-109H2;0.920482!10510-107D6;0.305054!10558-107I9;0.025467!10020-101D2;0.861753!10732-110B3;0.443945!10049-101G4;0.0453984!10698-109G5;0.255377!10437-106E5;0.632612!10417-106C3;0.479269!10035-101E8;0.73659!10171-103B9;0.453783!10157-103A4;0.472494!10034-101E7;0.465502!10072-101I9;0.414581!10199-103F1;0.791531!10200-103F2;0.235676!10697-109G4;0.632777!10723-110A3;0.655612!10179-103C8;0.684908!10160-103A7;0.777079!10180-103C9;0.843423!10162-103A9;0.593174!10021-101D3;0.651403!10840-111E3;0.898681!10706-109H4;0.789463!10033-101E6;0.187195!10032-101E5;0.690328!10490-107B4;0.37966!10439-106E7;0.573287!10022-101D4;0.680066!10176-103C5;0.710689!10469-106I1;0.433275!10067-101I4;0.635247!10411-106B6;0.8941!10471-106I3;0.641222!10030-101E3;0.640456!10475-106I7;0.63333!10787-110H4;0.357997!10477-106I9;0.470588!10695-109G2;0.187445!11771-123I7;0.823738!11772-123I8;0.481449!11773-123I9;0.668098!10093-102C3;0.804719!10442-106F1;0.162047!10442-106F1;0.776022!10201-103F3;0.93462!10639-108I9;0.190683!11843-124H7;0.246633!11841-124H5;0.614832!10693-109F9;0.0627849!10436-106E4;0.671403!10483-107A6;0.76163!10282-104F3;0.951276!10023-101D5;0.376283!10066-101I3;0.523831!10065-101I2;0.798076!10800-110I8;0.738443!10610-108F7;0.892253!10841-111E4;0.767948!10541-107H1;0.553506!10842-111E5;0.718503!10562-108A4;0.169562!10024-101D6;0.516969!10064-101I1;0.852827!10609-108F6;0.633864!10048-101G3;0.0608738!10781-110G7;0.922906!10181-103D1;0.666982!10159-103A6;0.670157!10056-101H2;0.624454!10737-110B8;0.625011!10025-101D7;0.0986599!10044-101F8;0.845032!10424-106D1;0.808043!10463-106H4;0.571054!10616-108G4;0.723388!10486-107A9;0.930182!10062-101H8;0.924154!10202-103F4;0.855316!10158-103A5;0.314378!10441-106E9;0.678169!10031-101E4;0.352074!10063-101H9;0.377564!10063-101H9;0.696443!11763-123H8;0.794055!11765-123I1;0.677738!11768-123I4;0.953601!10807-111A6;0.834318!10790-110H7;0.1223!10798-110I6;0.0860883!10786-110H3;0.430932!10591-108D6;0.369656!10593-108D8;0.697525!10590-108D5;0.704215!10026-101D8;0.529005!10096-102C6;0.36058!10168-103B6;0.0803375!10154-103A1;0.513403!10209-103G2;0.545257!10061-101H7;0.610951!10027-101D9;0.801636!10043-101F7;0.825245!10783-110G9;0.645254!10028-101E1;0.182399!10060-101H6;0.223333!10203-103F5;0.40746!10059-101H5;0.546428!10047-101G2;0.712167!10029-101E2;0.605784!10058-101H4;0.695587!10418-106C4;0.741282!10492-107B6;0.864932!10694-109G1;0.482125!10797-110I5;0.404487!10057-101H3;0.518231!10100-102D1;0.978068!10055-101H1;0.364679!10204-103F6;0.800999!10191-103E2;0.788613!10563-108A5;0.659654
|name=motif_GNGAGC
|name=motif_GNGAGC
|tomtom_result=MAC1#MA0326.1;-1;0.00758954;3.61262;1;5;GTGAGC;TGAGCAAA;-!NR4A2#MA0160.1;0;0.00897491;4.27206;1;6;GTGAGC;GTGACCTT;-!usp#MA0016.1;2;0.0106703;5.07906;1;6;GTGAGC;CCGTGACCCC;-!Mafb#MA0117.1;2;0.0112946;5.37625;1;6;GTGAGC;GCGTCAGC;-!Trl#MA0205.1;2;0.0116767;5.55813;1;6;GTGAGC;GAGAGAGCAA;-!Fos#MA0099.1;0;0.0126045;5.99972;1;6;GTGAGC;GTGAGTCA;+!Egr1#MA0162.1;3;0.0126869;6.03894;1;6;GTGAGC;TGCGTGGGCGT;+!CAD1#MA0279.1;4;0.0193839;9.22676;1;6;GTGAGC;ATTAGTAAGC;+
}}
}}

Latest revision as of 12:20, 7 September 2012

Full Name: motif_GNGAGC

Motif matrix
POACGT
0100600
0200060
0300600
0460000
0500600
0606000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MAC1#MA0326.1-10.007589543.6126215GTGAGCTGAGCAAA-
NR4A2#MA0160.100.008974914.2720616GTGAGCGTGACCTT-
usp#MA0016.120.01067035.0790616GTGAGCCCGTGACCCC-
Mafb#MA0117.120.01129465.3762516GTGAGCGCGTCAGC-
Trl#MA0205.120.01167675.5581316GTGAGCGAGAGAGCAA-
Fos#MA0099.100.01260455.9997216GTGAGCGTGAGTCA+
Egr1#MA0162.130.01268696.0389416GTGAGCTGCGTGGGCGT+
CAD1#MA0279.140.01938399.2267616GTGAGCATTAGTAAGC+
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