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MacroAPE 1083:STTCGVC,motif597: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.354;626.902;492.856;232.888!2;1.354;1.354;1.354;1349.938!3;215.286;1.354;1.354;1136.006!4;257.26;1094.032;1.354;1.354!5;357.456;1.354;993....")
 
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31335!10788-110H5;0.580408!10792-110H9;0.335422!10765-110E9;0.653943!10829-111D1;0.399555!10830-111D2;0.732428!10831-111D3;0.927644!10832-111D4;0.790731!10833-111D5;0.581019!10764-110E8;0.455407!10770-110F5;0.281239!10399-106A3;0.77807!10400-106A4;0.336631!10405-106A9;0.345393!10834-111D6;0.366186!10835-111D7;0.675618!10836-111D8;0.710275!10837-111D9;0.430619!10699-109G6;0.751359!10802-111A1;0.744221!10796-110I4;0.597279!10010-101C1;0.541459!10810-111A9;0.680343!10421-106C7;0.668799!10708-109H6;0.984419!12235-129G3;0.505921!12236-129G4;0.639135!12237-129G5;0.772204!10167-103B5;0.949585!10151-102I7;0.607462!10428-106D5;0.624458!10795-110I3;0.43121!10805-111A4;0.650846!10052-101G7;0.597844!10189-103D9;0.59458!10589-108D4;0.683257!10425-106D2;0.321864!10427-106D4;0.74201!10702-109G9;0.672576!10432-106D9;0.335597!10496-107C1;0.664625!10718-109I7;0.63121!10011-101C2;0.497358!10053-101G8;0.740775!10686-109F2;0.818414!10084-102B3;0.993517!10012-101C3;0.58519!10085-102B4;0.568055!10482-107A5;0.520694!10419-106C5;0.685652!10080-102A8;0.736652!10760-110E4;0.816627!10709-109H7;0.563809!10710-109H8;0.466933!10703-109H1;0.756317!10719-109I8;0.874337!10642-109A3;0.71412!10177-103C6;0.416822!10164-103B2;0.619989!10173-103C2;0.626711!10166-103B4;0.632727!10083-102B2;0.700821!10188-103D8;0.662352!10552-107I3;0.535206!10553-107I4;0.635057!10013-101C4;0.524797!10536-107G5;0.757035!10618-108G6;0.870818!10423-106C9;0.718607!10785-110H2;0.79612!12238-129G6;0.504236!12239-129G7;0.94523!12240-129G8;0.644748!10416-106C2;0.550955!10801-110I9;0.575589!10766-110F1;0.564058!10824-111C5;0.604982!10825-111C6;0.683721!10826-111C7;0.61091!10454-106G4;0.666926!10409-106B4;0.712512!10638-108I8;0.528412!10636-108I6;0.262865!10513-107D9;0.652279!10420-106C6;0.520515!10082-102B1;0.974899!10014-101C5;0.918179!10070-101I7;0.879413!10452-106G2;0.98409!10453-106G3;0.880152!10449-106F8;0.887374!10042-101F6;0.952548!10069-101I6;0.464226!10193-103E4;0.595491!10631-108I1;0.510946!10438-106E6;0.566488!10488-107B2;0.972582!10196-103E7;0.994185!10071-101I8;0.727222!10071-101I8;0.891515!10041-101F5;0.564287!10451-106G1;0.459364!10450-106F9;0.780318!10604-108F1;0.551917!10605-108F2;0.516573!10606-108F3;0.682452!10603-108E9;0.707267!10497-107C2;0.567466!10448-106F7;0.286334!10643-109A4;0.852821!10426-106D3;0.466396!10431-106D8;0.42204!10197-103E8;0.605497!10443-106F2;0.67477!10815-111B5;0.56013!10816-111B6;0.597333!10817-111B7;0.579436!10015-101C6;0.55356!10410-106B5;0.618567!10054-101G9;0.611279!10758-110E2;0.709642!10711-109H9;0.960878!10040-101F4;0.923499!10470-106I2;0.547558!10415-106C1;0.489021!10198-103E9;0.668134!10614-108G2;0.653329!10612-108F9;0.591199!10549-107H9;0.157715!10615-108G3;0.97279!10487-107B1;0.284635!10433-106E1;0.936127!10688-109F4;0.554104!10444-106F3;0.923301!10444-106F3;0.772606!10485-107A8;0.797528!10413-106B8;0.979402!10175-103C4;0.751913!10161-103A8;0.503247!12131-128D7;0.460113!10624-108H3;0.599718!10712-109I1;0.377668!10205-103F7;0.741589!10206-103F8;0.582459!10207-103F9;0.588429!10050-101G5;0.405234!10051-101G6;0.430862!10016-101C7;0.421134!10046-101G1;0.517102!10778-110G4;0.601172!10633-108I3;0.609929!10818-111B8;0.810159!10819-111B9;0.330278!10820-111C1;0.355282!10484-107A7;0.318418!10808-111A7;0.189703!10169-103B7;0.775988!10153-102I9;0.58748!13425-144D5;0.600873!13433-144E4;0.429479!13437-144E8;0.37061!11904-125F5;0.380877!11905-125F6;0.643064!10039-101F3;0.763566!10791-110H8;0.551196!10017-101C8;0.799696!10045-101F9;0.977872!10509-107D5;0.994579!10839-111E2;0.36655!10692-109F8;0.952432!10079-102A7;0.773042!10078-102A6;0.557188!10721-110A1;0.517072!10569-108B2;0.439998!10570-108B3;0.869437!10571-108B4;0.45559!10647-109A8;0.509641!10752-110D5;0.688684!10782-110G8;0.792123!10726-110A6;0.143636!10018-101C9;0.586736!10086-102B5;0.684169!10182-103D2;0.871749!10165-103B3;0.568369!10499-107C4;0.523761!10408-106B3;0.651185!10019-101D1;0.566728!10068-101I5;0.595724!10075-102A3;0.588081!10077-102A5;0.539346!10727-110A7;0.955194!10775-110G1;0.780483!10412-106B7;0.778986!12231-129F8;0.668558!12232-129F9;0.960018!12233-129G1;0.773803!12234-129G2;0.820505!10414-106B9;0.966641!10170-103B8;0.84858!10183-103D3;0.590439!10150-102I6;0.639384!10174-103C3;0.576921!10155-103A2;0.583123!10038-101F2;0.557241!10838-111E1;0.478896!10759-110E3;0.61022!10514-107E1;0.427506!10465-106H6;0.805462!10691-109F7;0.971963!10843-111E6;0.738034!10844-111E7;0.693333!11747-123G1;0.756674!11748-123G2;0.512737!11749-123G3;0.757573!11750-123G4;0.795231!11751-123G5;0.199556!11840-124H4;0.462697!11752-123G6;0.575352!11753-123G7;0.607451!11754-123G8;0.775158!11755-123G9;0.152452!11756-123H1;0.0833833!11833-124G6;0.432916!11760-123H5;0.845985!11836-124G9;0.55064!11758-123H3;0.446222!11835-124G8;0.548842!11762-123H7;0.843172!11838-124H2;0.835579!11757-123H2;0.703214!11759-123H4;0.380927!11761-123H6;0.147888!11842-124H6;0.93818!11837-124H1;0.868348!10568-108B1;0.964335!13230-141I8;0.201164!13231-141I9;0.698113!10696-109G3;0.753879!10493-107B7;0.769146!10494-107B8;0.434552!10850-111F4;0.52362!10851-111F5;0.898237!10852-111F6;0.468082!10853-111F7;0.282404!10854-111F8;0.225763!10855-111F9;0.454827!10856-111G1;0.786089!10847-111F1;0.196758!10846-111E9;0.885331!10848-111F2;0.419462!10845-111E8;0.524953!10857-111G2;0.546598!10858-111G3;0.817968!10156-103A3;0.479929!11901-125F2;0.604893!11902-125F3;0.937381!11903-125F4;0.901389!10689-109F5;0.961048!10648-109A9;0.607183!10784-110H1;0.734763!10744-110C6;0.583128!10772-110F7;0.799954!10474-106I6;0.505221!10600-108E6;0.96763!10684-109E9;0.659819!12226-129F3;0.675619!12227-129F4;0.815341!10508-107D4;0.654427!10539-107G8;0.835778!10607-108F4;0.786447!10555-107I6;0.815644!10774-110F9;0.906401!10637-108I7;0.562172!10663-109C6;0.992987!10728-110A8;0.897289!10729-110A9;0.694906!10430-106D7;0.590951!10730-110B1;0.595141!10813-111B3;0.963217!10812-111B2;0.427527!10037-101F1;0.60617!10172-103C1;0.537914!10163-103B1;0.60397!10076-102A4;0.539574!10073-102A1;0.549183!10036-101E9;0.504744!10195-103E6;0.537543!10277-104E7;0.609921!10434-106E2;0.478552!10550-107I1;0.61292!10545-107H5;0.483689!10544-107H4;0.876731!10704-109H2;0.893445!10510-107D6;0.918482!10558-107I9;0.491642!10020-101D2;0.71483!10732-110B3;0.810687!10049-101G4;0.952225!10698-109G5;0.73552!10437-106E5;0.730203!10417-106C3;0.813831!10035-101E8;0.671546!10171-103B9;0.526902!10157-103A4;0.525297!10034-101E7;0.601417!10072-101I9;0.53634!10199-103F1;0.477168!10200-103F2;0.388482!10697-109G4;0.509044!10723-110A3;0.973101!10179-103C8;0.383766!10160-103A7;0.682738!10180-103C9;0.605711!10162-103A9;0.500247!10021-101D3;0.460922!10840-111E3;0.702358!10706-109H4;0.672297!10033-101E6;0.705719!10032-101E5;0.521564!10490-107B4;0.538761!10439-106E7;0.526265!10022-101D4;0.451764!10176-103C5;0.661572!10469-106I1;0.64726!10067-101I4;0.861783!10411-106B6;0.94874!10471-106I3;0.806226!10030-101E3;0.0769683!10475-106I7;0.5626!10787-110H4;0.394429!10477-106I9;0.834431!10695-109G2;0.427322!11771-123I7;0.897698!11772-123I8;0.941106!11773-123I9;0.915305!10093-102C3;0.829538!10442-106F1;0.460642!10442-106F1;0.924107!10201-103F3;0.890174!10639-108I9;0.696535!11843-124H7;0.785467!11841-124H5;0.0802753!10693-109F9;0.287162!10436-106E4;0.301419!10483-107A6;0.86374!10282-104F3;0.692227!10023-101D5;0.285875!10066-101I3;0.390883!10065-101I2;0.695882!10800-110I8;0.766672!10610-108F7;0.620958!10841-111E4;0.933947!10541-107H1;0.961942!10842-111E5;0.575442!10562-108A4;0.841226!10024-101D6;0.725077!10064-101I1;0.75255!10609-108F6;0.952007!10048-101G3;0.937612!10781-110G7;0.617973!10181-103D1;0.686985!10159-103A6;0.536763!10056-101H2;0.41718!10737-110B8;0.58208!10025-101D7;0.69144!10044-101F8;0.968718!10424-106D1;0.740138!10463-106H4;0.801074!10616-108G4;0.953379!10486-107A9;0.836126!10062-101H8;0.944272!10202-103F4;0.771575!10158-103A5;0.478518!10441-106E9;0.429633!10031-101E4;0.562561!10063-101H9;0.561153!10063-101H9;0.540478!11763-123H8;0.850194!11765-123I1;0.617054!11768-123I4;0.78082!10807-111A6;0.664551!10790-110H7;0.553083!10798-110I6;0.548353!10786-110H3;0.962295!10591-108D6;0.291104!10593-108D8;0.413702!10590-108D5;0.428555!10026-101D8;0.516962!10096-102C6;0.670825!10168-103B6;0.49723!10154-103A1;0.578888!10209-103G2;0.53968!10061-101H7;0.416143!10027-101D9;0.619256!10043-101F7;0.848311!10783-110G9;0.910356!10028-101E1;0.78375!10060-101H6;0.557228!10203-103F5;0.650537!10059-101H5;0.370088!10047-101G2;0.531469!10029-101E2;0.417951!10058-101H4;0.547169!10418-106C4;0.691164!10492-107B6;0.3234!10694-109G1;0.204862!10797-110I5;0.871352!10057-101H3;0.500559!10100-102D1;0.688762!10055-101H1;0.637905!10204-103F6;0.958134!10191-103E2;0.591539!10563-108A5;0.67107
|name=STTCGVC,motif597,CNhs11371,T:1354.0(46.45%),B:25492.8(35.97%),P:1e-30
|name=STTCGVC,motif597,CNhs11371,T:1354.0(46.45%),B:25492.8(35.97%),P:1e-30
|tomtom_result=Deaf1#MA0185.1;-1;0.00391335;1.86275;1;6;CTTCGGC;TTCGGG;+!OPI1#MA0349.1;2;0.012377;5.89145;1;5;CTTCGGC;CGGTTCG;-!XBP1#MA0414.1;0;0.020061;9.54906;1;7;CTTCGGC;CCTCGAG;-
}}
}}

Latest revision as of 12:53, 7 September 2012

Full Name: STTCGVC,motif597,CNhs11371,T:1354.0(46.45%),B:25492.8(35.97%),P:1e-30

Motif matrix
POACGT
11.354626.902492.856232.888
21.3541.3541.3541349.938
3215.2861.3541.3541136.006
4257.261094.0321.3541.354
5357.4561.354993.8361.354
6392.66477.962482.0241.354
71.354878.746472.5461.354

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Deaf1#MA0185.1-10.003913351.8627516CTTCGGCTTCGGG+
OPI1#MA0349.120.0123775.8914515CTTCGGCCGGTTCG-
XBP1#MA0414.100.0200619.5490617CTTCGGCCCTCGAG-
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