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MacroAPE 1083:TGTGTGCG,motif245: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;188.062;4.242;1.414;1220.282!2;135.744;2.828;1063.328;212.1!3;151.298;63.63;1.414;1197.658!4;353.5;229.068;746.592;84.84!5;100.394;289.87;1....")
 
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10464-106H5;0.473332!10827-111C8;0.420585!10789-110H6;0.981287!10828-111C9;0.335419!10788-110H5;0.692051!10792-110H9;0.728525!10765-110E9;0.96421!10829-111D1;0.833172!10830-111D2;0.643345!10831-111D3;0.610273!10832-111D4;0.983526!10833-111D5;0.989109!10764-110E8;0.908642!10770-110F5;0.947303!10399-106A3;0.453903!10400-106A4;0.365202!10405-106A9;0.340734!10834-111D6;0.44746!10835-111D7;0.645914!10836-111D8;0.145693!10837-111D9;0.369359!10699-109G6;0.308826!10802-111A1;0.787354!10796-110I4;0.788704!10010-101C1;0.131162!10810-111A9;0.407169!10421-106C7;0.144753!10708-109H6;0.385978!12235-129G3;0.100458!12236-129G4;0.154722!12237-129G5;0.674196!10167-103B5;0.384093!10151-102I7;0.0119918!10428-106D5;0.0146907!10795-110I3;0.151465!10805-111A4;0.497609!10052-101G7;0.799629!10189-103D9;0.183395!10589-108D4;0.130017!10425-106D2;0.388152!10427-106D4;0.260762!10702-109G9;0.87548!10432-106D9;0.475282!10496-107C1;0.727329!10718-109I7;0.473272!10011-101C2;0.754024!10053-101G8;0.250349!10686-109F2;0.659633!10084-102B3;0.340497!10012-101C3;0.00833463!10085-102B4;0.0221984!10482-107A5;0.00210651!10419-106C5;0.913526!10080-102A8;0.68712!10760-110E4;0.141867!10709-109H7;0.478001!10710-109H8;0.820332!10703-109H1;0.519789!10719-109I8;0.50028!10642-109A3;0.153862!10177-103C6;0.108285!10164-103B2;0.0291566!10173-103C2;0.0295418!10166-103B4;0.0259328!10083-102B2;0.0192365!10188-103D8;0.0128512!10552-107I3;0.0248465!10553-107I4;0.440691!10013-101C4;0.394487!10536-107G5;0.377957!10618-108G6;0.366394!10423-106C9;0.0764885!10785-110H2;0.0209907!12238-129G6;0.194704!12239-129G7;0.013446!12240-129G8;0.187276!10416-106C2;0.0514531!10801-110I9;0.0998476!10766-110F1;0.893063!10824-111C5;0.19364!10825-111C6;0.225282!10826-111C7;0.251849!10454-106G4;0.21222!10409-106B4;0.314012!10638-108I8;0.264787!10636-108I6;0.174966!10513-107D9;0.152435!10420-106C6;0.114837!10082-102B1;0.363809!10014-101C5;0.550792!10070-101I7;0.53075!10452-106G2;0.357713!10453-106G3;0.605356!10449-106F8;0.992623!10042-101F6;0.90118!10069-101I6;0.0267029!10193-103E4;0.636489!10631-108I1;0.0206608!10438-106E6;0.539194!10488-107B2;0.858558!10196-103E7;0.131364!10071-101I8;0.415222!10071-101I8;0.530589!10041-101F5;0.00280502!10451-106G1;0.0586572!10450-106F9;0.416295!10604-108F1;0.875415!10605-108F2;0.602887!10606-108F3;0.368811!10603-108E9;0.825378!10497-107C2;0.634031!10448-106F7;0.0327609!10643-109A4;0.416587!10426-106D3;0.692685!10431-106D8;0.820941!10197-103E8;0.569148!10443-106F2;0.957752!10815-111B5;0.70095!10816-111B6;0.162499!10817-111B7;0.277255!10015-101C6;0.185909!10410-106B5;0.528774!10054-101G9;0.615792!10758-110E2;0.239348!10711-109H9;0.44835!10040-101F4;0.146987!10470-106I2;0.0153196!10415-106C1;0.838102!10198-103E9;0.567549!10614-108G2;0.131865!10612-108F9;0.321131!10549-107H9;0.563297!10615-108G3;0.0769533!10487-107B1;0.662456!10433-106E1;0.573059!10688-109F4;0.431935!10444-106F3;0.601764!10444-106F3;0.0707013!10485-107A8;0.0742064!10413-106B8;0.541136!10175-103C4;0.370804!10161-103A8;0.0236114!12131-128D7;0.0135576!10624-108H3;0.419185!10712-109I1;0.481791!10205-103F7;0.863838!10206-103F8;0.6603!10207-103F9;0.277102!10050-101G5;0.277975!10051-101G6;0.971097!10016-101C7;0.879609!10046-101G1;0.754657!10778-110G4;0.373656!10633-108I3;0.606716!10818-111B8;0.0944837!10819-111B9;0.00762058!10820-111C1;0.00658903!10484-107A7;0.00883113!10808-111A7;0.276277!10169-103B7;0.575071!10153-102I9;0.031883!13425-144D5;0.0154062!13433-144E4;0.482571!13437-144E8;0.427938!11904-125F5;0.330325!11905-125F6;0.764433!10039-101F3;0.684529!10791-110H8;0.0118939!10017-101C8;0.520422!10045-101F9;0.673101!10509-107D5;0.279671!10839-111E2;0.318317!10692-109F8;0.818184!10079-102A7;0.727678!10078-102A6;0.68435!10721-110A1;0.922582!10569-108B2;0.527697!10570-108B3;0.0687708!10571-108B4;0.0320029!10647-109A8;0.0910885!10752-110D5;0.921421!10782-110G8;0.183642!10726-110A6;0.0953347!10018-101C9;0.322524!10086-102B5;0.547927!10182-103D2;0.664386!10165-103B3;0.0453834!10499-107C4;0.0375963!10408-106B3;0.463544!10019-101D1;0.741058!10068-101I5;0.515668!10075-102A3;0.170363!10077-102A5;0.386419!10727-110A7;0.425952!10775-110G1;0.781998!10412-106B7;0.594428!12231-129F8;0.405964!12232-129F9;0.67292!12233-129G1;0.75341!12234-129G2;0.934116!10414-106B9;0.963776!10170-103B8;0.580052!10183-103D3;0.0190975!10150-102I6;0.0168791!10174-103C3;0.0158393!10155-103A2;0.0784961!10038-101F2;0.0547313!10838-111E1;0.051371!10759-110E3;0.0907544!10514-107E1;0.857526!10465-106H6;0.80709!10691-109F7;0.291158!10843-111E6;0.666677!10844-111E7;0.462851!11747-123G1;0.113772!11748-123G2;0.102089!11749-123G3;0.511224!11750-123G4;0.0417472!11751-123G5;0.613739!11840-124H4;0.441729!11752-123G6;0.217559!11753-123G7;0.046446!11754-123G8;0.285179!11755-123G9;0.14327!11756-123H1;0.048678!11833-124G6;0.0188883!11760-123H5;0.117916!11836-124G9;0.213567!11758-123H3;0.0238143!11835-124G8;0.00981219!11762-123H7;0.360398!11838-124H2;0.0834796!11757-123H2;0.0147688!11759-123H4;0.000125107!11761-123H6;0.0685148!11842-124H6;0.121351!11837-124H1;0.155328!10568-108B1;0.541882!13230-141I8;0.0373431!13231-141I9;0.578646!10696-109G3;0.541362!10493-107B7;0.367586!10494-107B8;0.226796!10850-111F4;0.178886!10851-111F5;0.551769!10852-111F6;0.0203004!10853-111F7;0.299452!10854-111F8;0.113642!10855-111F9;0.472413!10856-111G1;0.052002!10847-111F1;0.0705268!10846-111E9;0.693799!10848-111F2;0.0318124!10845-111E8;0.0192191!10857-111G2;0.2147!10858-111G3;0.05135!10156-103A3;0.00297668!11901-125F2;0.0129284!11902-125F3;0.341742!11903-125F4;0.669947!10689-109F5;0.332427!10648-109A9;0.0340703!10784-110H1;0.0824312!10744-110C6;0.464551!10772-110F7;0.59268!10474-106I6;0.994562!10600-108E6;0.758861!10684-109E9;0.254267!12226-129F3;0.546115!12227-129F4;0.605147!10508-107D4;0.00130417!10539-107G8;0.491714!10607-108F4;0.499834!10555-107I6;0.424959!10774-110F9;0.732686!10637-108I7;0.791549!10663-109C6;0.245326!10728-110A8;0.778196!10729-110A9;0.367668!10430-106D7;0.669697!10730-110B1;0.977141!10813-111B3;0.520021!10812-111B2;0.96159!10037-101F1;0.0802118!10172-103C1;0.0188352!10163-103B1;0.0197059!10076-102A4;0.010615!10073-102A1;0.0115063!10036-101E9;0.00198196!10195-103E6;0.0107589!10277-104E7;0.0140752!10434-106E2;0.0453401!10550-107I1;0.222513!10545-107H5;0.940754!10544-107H4;0.776266!10704-109H2;0.948212!10510-107D6;0.492752!10558-107I9;0.634715!10020-101D2;0.125987!10732-110B3;0.122819!10049-101G4;0.450348!10698-109G5;0.354922!10437-106E5;0.0568933!10417-106C3;0.0499903!10035-101E8;0.455142!10171-103B9;0.0173353!10157-103A4;0.0183636!10034-101E7;0.0134235!10072-101I9;0.0146902!10199-103F1;0.00327881!10200-103F2;0.305807!10697-109G4;0.432684!10723-110A3;0.0713918!10179-103C8;0.66807!10160-103A7;0.246681!10180-103C9;0.176687!10162-103A9;0.666609!10021-101D3;0.295632!10840-111E3;0.97641!10706-109H4;0.993305!10033-101E6;0.223831!10032-101E5;0.0727188!10490-107B4;0.0118883!10439-106E7;0.240019!10022-101D4;0.597906!10176-103C5;0.253133!10469-106I1;0.0259649!10067-101I4;0.35414!10411-106B6;0.220908!10471-106I3;0.824849!10030-101E3;0.760429!10475-106I7;0.142524!10787-110H4;0.820271!10477-106I9;0.00454003!10695-109G2;0.587038!11771-123I7;0.656341!11772-123I8;0.70924!11773-123I9;0.658681!10093-102C3;0.239974!10442-106F1;0.331319!10442-106F1;0.00179435!10201-103F3;0.0162971!10639-108I9;0.223563!11843-124H7;0.696515!11841-124H5;0.172761!10693-109F9;0.145318!10436-106E4;0.535018!10483-107A6;0.494321!10282-104F3;0.126494!10023-101D5;0.808115!10066-101I3;0.791484!10065-101I2;0.769284!10800-110I8;0.565369!10610-108F7;0.41395!10841-111E4;0.565417!10541-107H1;0.558215!10842-111E5;0.779251!10562-108A4;0.468805!10024-101D6;0.77801!10064-101I1;0.397352!10609-108F6;0.700217!10048-101G3;0.455259!10781-110G7;0.235857!10181-103D1;0.84481!10159-103A6;0.0401035!10056-101H2;0.0381899!10737-110B8;0.0671564!10025-101D7;0.274842!10044-101F8;0.234445!10424-106D1;0.160734!10463-106H4;0.669517!10616-108G4;0.813127!10486-107A9;0.709477!10062-101H8;0.548392!10202-103F4;0.42385!10158-103A5;0.164859!10441-106E9;0.027371!10031-101E4;0.0294678!10063-101H9;0.00935642!10063-101H9;0.0023623!11763-123H8;0.325426!11765-123I1;0.248756!11768-123I4;0.433136!10807-111A6;0.133616!10790-110H7;0.141397!10798-110I6;0.189803!10786-110H3;0.377259!10591-108D6;0.0851375!10593-108D8;0.0748611!10590-108D5;0.28357!10026-101D8;0.0104534!10096-102C6;0.267816!10168-103B6;0.29147!10154-103A1;0.0196634!10209-103G2;0.0172012!10061-101H7;0.9787!10027-101D9;0.634786!10043-101F7;0.488939!10783-110G9;0.46006!10028-101E1;0.951951!10060-101H6;0.354206!10203-103F5;0.178933!10059-101H5;0.876296!10047-101G2;0.892143!10029-101E2;0.495669!10058-101H4;0.634614!10418-106C4;0.54549!10492-107B6;0.364189!10694-109G1;0.113052!10797-110I5;0.560095!10057-101H3;0.931932!10100-102D1;0.797427!10055-101H1;0.224133!10204-103F6;0.740927!10191-103E2;0.156758!10563-108A5;0.393143
|name=TGTGTGCG,motif245,CNhs10646,T:1414.0(40.46%),B:19167.3(30.04%),P:1e-38
|name=TGTGTGCG,motif245,CNhs10646,T:1414.0(40.46%),B:19167.3(30.04%),P:1e-38
|tomtom_result=RAP1#MA0359.1;0;0.00581766;2.76921;1;8;TGTGTGCG;TGTATGGGTG;-!DAL82#MA0291.1;0;0.00791824;3.76908;1;8;TGTGTGCG;AATGTGCGC;+!HMG-1#MA0044.1;2;0.0116807;5.56;1;7;TGTGTGCG;GTTGTACTC;+!TEA1#MA0405.1;1;0.0150735;7.17499;1;7;TGTGTGCG;ATGCCCGC;-
}}
}}

Latest revision as of 12:56, 7 September 2012

Full Name: TGTGTGCG,motif245,CNhs10646,T:1414.0(40.46%),B:19167.3(30.04%),P:1e-38

Motif matrix
POACGT
1188.0624.2421.4141220.282
2135.7442.8281063.328212.1
3151.29863.631.4141197.658
4353.5229.068746.59284.84
5100.394289.871.4141022.322
61.41491.911139.684180.992
71.4141242.9061.414168.266
8469.44887.668854.0562.828

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RAP1#MA0359.100.005817662.7692118TGTGTGCGTGTATGGGTG-
DAL82#MA0291.100.007918243.7690818TGTGTGCGAATGTGCGC+
HMG-1#MA0044.120.01168075.5617TGTGTGCGGTTGTACTC+
TEA1#MA0405.110.01507357.1749917TGTGTGCGATGCCCGC-
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