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MacroAPE 1083:CNhs13156 bu f0: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;253.52577289152336;213.00754496961005;360.04898126885877;134.97570627091667!2;314.2757311054767;34.21355523547893;296.89090227206646;316.177...")
 
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2183-129A5;0.00101484!12184-129A6;0.00224419!10809-111A8;0.00090676!10597-108E3;0.00168304!10717-109I6;0.0551047!10455-106G5;0.0209343!10534-107G3;0.0361166!10429-106D6;0.00345898!10464-106H5;0.0515585!10827-111C8;0.0204224!10789-110H6;0.990843!10828-111C9;0.856644!10788-110H5;0.790005!10792-110H9;0.140702!10765-110E9;0.466161!10829-111D1;0.224784!10830-111D2;0.122991!10831-111D3;0.835151!10832-111D4;0.674794!10833-111D5;0.184247!10764-110E8;0.123511!10770-110F5;0.150545!10399-106A3;0.606908!10400-106A4;0.0644157!10405-106A9;0.0232795!10834-111D6;0.0695513!10835-111D7;0.351027!10836-111D8;0.0319344!10837-111D9;0.0988903!10699-109G6;0.275093!10802-111A1;0.411352!10796-110I4;0.391902!10010-101C1;0.131905!10810-111A9;0.00182136!10421-106C7;0.00925483!10708-109H6;0.767364!12235-129G3;0.0101839!12236-129G4;0.783022!12237-129G5;0.722965!10167-103B5;0.738404!10151-102I7;0.447807!10428-106D5;0.273222!10795-110I3;7.02639e-05!10805-111A4;0.0380789!10052-101G7;0.00998808!10189-103D9;0.00462267!10589-108D4;2.4263e-06!10425-106D2;0.0250878!10427-106D4;0.0229679!10702-109G9;0.123332!10432-106D9;0.707802!10496-107C1;0.0838858!10718-109I7;0.150918!10011-101C2;0.441838!10053-101G8;0.00258136!10686-109F2;0.00234389!10084-102B3;0.0937074!10012-101C3;0.188715!10085-102B4;0.209788!10482-107A5;0.955821!10419-106C5;0.0257027!10080-102A8;0.0207132!10760-110E4;0.00813377!10709-109H7;0.0125155!10710-109H8;0.06775!10703-109H1;0.0970783!10719-109I8;0.000321883!10642-109A3;0.000386942!10177-103C6;7.09523e-07!10164-103B2;0.259592!10173-103C2;0.222715!10166-103B4;0.646508!10083-102B2;0.753843!10188-103D8;0.934921!10552-107I3;0.171521!10553-107I4;0.0194717!10013-101C4;0.180724!10536-107G5;0.0015828!10618-108G6;0.036092!10423-106C9;0.052598!10785-110H2;0.0382189!12238-129G6;0.0739875!12239-129G7;0.0500516!12240-129G8;0.242262!10416-106C2;0.00498991!10801-110I9;0.174744!10766-110F1;0.914068!10824-111C5;0.685728!10825-111C6;0.0338709!10826-111C7;0.0409813!10454-106G4;0.0433629!10409-106B4;0.015183!10638-108I8;0.318047!10636-108I6;0.0128696!10513-107D9;0.028302!10420-106C6;0.00625106!10082-102B1;0.00603209!10014-101C5;4.36817e-05!10070-101I7;6.76938e-05!10452-106G2;0.00384978!10453-106G3;0.00365088!10449-106F8;0.00479124!10042-101F6;0.00553501!10069-101I6;0.0856127!10193-103E4;0.00727974!10631-108I1;0.244407!10438-106E6;0.0140437!10488-107B2;0.18482!10196-103E7;0.0133384!10071-101I8;0.0297437!10071-101I8;0.000908265!10041-101F5;0.432229!10451-106G1;0.00121461!10450-106F9;0.000117721!10604-108F1;6.8496e-05!10605-108F2;0.321784!10606-108F3;0.208807!10603-108E9;0.244806!10497-107C2;0.254823!10448-106F7;0.579816!10643-109A4;0.0231075!10426-106D3;0.194734!10431-106D8;0.407037!10197-103E8;0.00881733!10443-106F2;0.00418048!10815-111B5;0.00150393!10816-111B6;0.0207903!10817-111B7;0.0202042!10015-101C6;0.0236761!10410-106B5;0.000461724!10054-101G9;0.0322553!10758-110E2;0.0289801!10711-109H9;0.00490673!10040-101F4;0.00418072!10470-106I2;0.431511!10415-106C1;0.212177!10198-103E9;0.228807!10614-108G2;0.000180465!10612-108F9;0.240617!10549-107H9;0.407297!10615-108G3;0.000413682!10487-107B1;0.0218068!10433-106E1;0.00213708!10688-109F4;0.2505!10444-106F3;0.787037!10444-106F3;0.228098!10485-107A8;0.23756!10413-106B8;0.000857618!10175-103C4;0.0106879!10161-103A8;0.141627!12131-128D7;0.103492!10624-108H3;0.748957!10712-109I1;0.0346094!10205-103F7;0.196871!10206-103F8;0.0103196!10207-103F9;0.0187995!10050-101G5;0.00509796!10051-101G6;0.00886744!10016-101C7;0.00698808!10046-101G1;0.00353772!10778-110G4;0.0217577!10633-108I3;0.915733!10818-111B8;0.038671!10819-111B9;0.0730292!10820-111C1;0.0527436!10484-107A7;0.0551576!10808-111A7;0.0149703!10169-103B7;0.105404!10153-102I9;0.402082!13425-144D5;0.157814!13433-144E4;0.00330732!13437-144E8;0.00182634!11904-125F5;0.00102171!11905-125F6;0.555631!10039-101F3;0.879422!10791-110H8;0.374857!10017-101C8;0.263116!10045-101F9;0.000191458!10509-107D5;0.00342227!10839-111E2;0.229565!10692-109F8;0.00446557!10079-102A7;0.0145347!10078-102A6;0.00439547!10721-110A1;0.00692689!10569-108B2;0.00954602!10570-108B3;0.838471!10571-108B4;0.312922!10647-109A8;0.842184!10752-110D5;0.0214226!10782-110G8;0.375505!10726-110A6;0.284379!10018-101C9;0.170682!10086-102B5;0.000249329!10182-103D2;0.000613727!10165-103B3;0.1405!10499-107C4;0.146044!10408-106B3;0.0545711!10019-101D1;0.880563!10068-101I5;1.58444e-05!10075-102A3;0.00465625!10077-102A5;6.48391e-06!10727-110A7;7.97569e-07!10775-110G1;0.430836!10412-106B7;0.0516903!12231-129F8;0.140034!12232-129F9;0.273773!12233-129G1;0.0840128!12234-129G2;0.1601!10414-106B9;0.534455!10170-103B8;0.0292327!10183-103D3;0.586814!10150-102I6;0.392985!10174-103C3;0.283615!10155-103A2;0.0843593!10038-101F2;0.0619265!10838-111E1;0.0584543!10759-110E3;1.2646e-05!10514-107E1;0.00405167!10465-106H6;0.0126772!10691-109F7;0.00776078!10843-111E6;0.173258!10844-111E7;3.89228e-05!11747-123G1;2.94133e-05!11748-123G2;0.285306!11749-123G3;0.623304!11750-123G4;0.465748!11751-123G5;0.251282!11840-124H4;0.729599!11752-123G6;0.453948!11753-123G7;0.731096!11754-123G8;0.880977!11755-123G9;0.273907!11756-123H1;0.121481!11833-124G6;0.365378!11760-123H5;0.835512!11836-124G9;0.253221!11758-123H3;0.653264!11835-124G8;0.738764!11762-123H7;0.725782!11838-124H2;0.803825!11757-123H2;0.875589!11759-123H4;0.213949!11761-123H6;0.257992!11842-124H6;0.646782!11837-124H1;0.363736!10568-108B1;0.975903!13230-141I8;0.0895161!13231-141I9;0.943877!10696-109G3;0.940959!10493-107B7;0.992268!10494-107B8;0.0386702!10850-111F4;0.341664!10851-111F5;0.000983208!10852-111F6;0.0470773!10853-111F7;0.0409093!10854-111F8;0.00504176!10855-111F9;0.00187281!10856-111G1;0.184737!10847-111F1;0.238786!10846-111E9;3.69002e-06!10848-111F2;0.0116321!10845-111E8;0.00106023!10857-111G2;0.0189442!10858-111G3;0.000860881!10156-103A3;0.000908383!11901-125F2;0.27158!11902-125F3;0.276281!11903-125F4;0.355401!10689-109F5;0.396722!10648-109A9;0.00128473!10784-110H1;0.00968866!10744-110C6;0.0387282!10772-110F7;0.630427!10474-106I6;0.0676073!10600-108E6;0.0909791!10684-109E9;0.013216!12226-129F3;0.00964782!12227-129F4;0.37393!10508-107D4;0.0512476!10539-107G8;0.00149883!10607-108F4;0.00833829!10555-107I6;0.00749916!10774-110F9;0.000237433!10637-108I7;0.0195867!10663-109C6;0.000102738!10728-110A8;0.0112863!10729-110A9;0.0874395!10430-106D7;0.363342!10730-110B1;0.00338251!10813-111B3;0.00226952!10812-111B2;0.188327!10037-101F1;0.695522!10172-103C1;0.313664!10163-103B1;0.742161!10076-102A4;0.266444!10073-102A1;0.452023!10036-101E9;0.265656!10195-103E6;0.285651!10277-104E7;0.269743!10434-106E2;0.214006!10550-107I1;0.407198!10545-107H5;0.00347823!10544-107H4;0.160518!10704-109H2;0.251673!10510-107D6;0.570699!10558-107I9;0.0113647!10020-101D2;0.0234336!10732-110B3;0.00724369!10049-101G4;0.000337518!10698-109G5;0.0156408!10437-106E5;0.120601!10417-106C3;0.0141638!10035-101E8;0.954435!10171-103B9;0.369773!10157-103A4;0.776556!10034-101E7;0.328146!10072-101I9;0.330867!10199-103F1;0.151928!10200-103F2;0.000373877!10697-109G4;0.00224839!10723-110A3;0.0216917!10179-103C8;0.0349737!10160-103A7;0.346529!10180-103C9;0.32821!10162-103A9;0.747329!10021-101D3;0.809032!10840-111E3;0.00924025!10706-109H4;0.0533264!10033-101E6;0.537777!10032-101E5;0.339894!10490-107B4;0.309372!10439-106E7;0.00972404!10022-101D4;0.00137694!10176-103C5;0.0041004!10469-106I1;0.320294!10067-101I4;0.183338!10411-106B6;0.133843!10471-106I3;0.0206656!10030-101E3;0.0268221!10475-106I7;0.0098731!10787-110H4;0.000352504!10477-106I9;8.85871e-05!10695-109G2;0.00756185!11771-123I7;0.797591!11772-123I8;0.495088!11773-123I9;0.700611!10093-102C3;0.513603!10442-106F1;0.000757504!10442-106F1;2.73847e-06!10201-103F3;1.63739e-05!10639-108I9;0.00659968!11843-124H7;0.192786!11841-124H5;0.0772873!10693-109F9;0.0407662!10436-106E4;0.598924!10483-107A6;0.477849!10282-104F3;0.625908!10023-101D5;0.0491287!10066-101I3;0.00764246!10065-101I2;0.00765197!10800-110I8;0.00670845!10610-108F7;0.000236924!10841-111E4;0.0518684!10541-107H1;0.000506126!10842-111E5;0.000280397!10562-108A4;0.000353412!10024-101D6;0.0564196!10064-101I1;2.16688e-06!10609-108F6;0.00055135!10048-101G3;0.0129426!10781-110G7;0.0170943!10181-103D1;0.151947!10159-103A6;0.0851022!10056-101H2;0.0882334!10737-110B8;0.1486!10025-101D7;0.387869!10044-101F8;3.53732e-06!10424-106D1;0.000123801!10463-106H4;0.0527167!10616-108G4;0.266638!10486-107A9;0.239722!10062-101H8;0.00790559!10202-103F4;0.00357885!10158-103A5;0.000162656!10441-106E9;0.0959579!10031-101E4;1.93604e-05!10063-101H9;0.206033!10063-101H9;0.327082!11763-123H8;0.0017721!11765-123I1;0.846818!11768-123I4;0.373073!10807-111A6;0.453805!10790-110H7;0.000533998!10798-110I6;0.00214648!10786-110H3;0.0421175!10591-108D6;0.00316384!10593-108D8;0.00895456!10590-108D5;0.0275555!10026-101D8;0.0103799!10096-102C6;0.580469!10168-103B6;0.0057498!10154-103A1;0.272703!10209-103G2;0.16365!10061-101H7;0.000198066!10027-101D9;0.0132143!10043-101F7;0.0196627!10783-110G9;0.00048175!10028-101E1;0.00227969!10060-101H6;0.00145755!10203-103F5;0.0210456!10059-101H5;0.000564548!10047-101G2;0.0100371!10029-101E2;3.782e-07!10058-101H4;2.79619e-05!10418-106C4;0.00777503!10492-107B6;0.00437279!10694-109G1;0.000298909!10797-110I5;0.000181251!10057-101H3;0.329883!10100-102D1;0.00436483!10055-101H1;0.00849473!10204-103F6;0.0488342!10191-103E2;0.00321769!10563-108A5;5.49509e-05
|name=CNhs13156_bu_f0
|name=CNhs13156_bu_f0
|tomtom_result=MET28#MA0332.1;-4;0.000531926;0.253197;0.299439;6;GTGGCTGGGGTC;CTGTGG;+!RUNX1#MA0002.2;-2;0.000631232;0.300467;0.299439;10;GTGGCTGGGGTC;GTCTGTGGTTT;+!CRZ1#MA0285.1;0;0.00219431;1.04449;0.545386;9;GTGGCTGGGGTC;GTGGCTTAG;-!Pax4#MA0068.1;5;0.00283957;1.35163;0.545386;12;GTGGCTGGGGTC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!YGR067C#MA0425.1;3;0.004015;1.91114;0.545386;11;GTGGCTGGGGTC;TGAAAAAGTGGGGT;-!Klf4#MA0039.2;-1;0.00444505;2.11585;0.545386;10;GTGGCTGGGGTC;TGGGTGGGGC;+!GAL4#MA0299.1;1;0.00456685;2.17382;0.545386;12;GTGGCTGGGGTC;GAGTACTGTTCCCCG;-!ACE2#MA0267.1;-2;0.00459881;2.18903;0.545386;7;GTGGCTGGGGTC;TGCTGGT;-!SWI5#MA0402.1;-2;0.00793728;3.77814;0.790568;8;GTGGCTGGGGTC;TGCTGGTT;+!INSM1#MA0155.1;-1;0.00833278;3.9664;0.790568;11;GTGGCTGGGGTC;TGTCAGGGGGCG;+!SP1#MA0079.1;0;0.00973651;4.63458;0.795117;10;GTGGCTGGGGTC;GGGGCGGGGT;+!Tal1::Gata1#MA0140.1;-4;0.0120098;5.71668;0.795117;8;GTGGCTGGGGTC;CTGGTGGGGACAGATAAG;+!MET4#MA0335.1;-2;0.0128336;6.10878;0.795117;8;GTGGCTGGGGTC;AACTGTGG;+!MIG1#MA0337.1;-4;0.0132521;6.30799;0.795117;7;GTGGCTGGGGTC;GCGGGGG;-!YPR022C#MA0436.1;-3;0.0132521;6.30799;0.795117;7;GTGGCTGGGGTC;CGTGGGG;-!MET31#MA0333.1;-3;0.0140936;6.70855;0.795117;9;GTGGCTGGGGTC;GGTGTGGCG;+!BAS1#MA0278.1;11;0.0142473;6.78169;0.795117;10;GTGGCTGGGGTC;TTGACTTGACTCTGGCTGTGC;-!Zfx#MA0146.1;1;0.01746;8.31095;0.88946;12;GTGGCTGGGGTC;CAGGCCTCGGCCCC;-!ADR1#MA0268.1;-4;0.0178127;8.47887;0.88946;7;GTGGCTGGGGTC;GTGGGGT;-
}}
}}

Latest revision as of 13:00, 7 September 2012

Full Name: CNhs13156_bu_f0

Motif matrix
POACGT
1253.52577289152336213.00754496961005360.04898126885877134.97570627091667
2314.275731105476734.21355523547893296.89090227206646316.1778167878866
339.482540444659281.3340026404384555547.2322923051655373.50917001064516
4154.8510764710673324.2778287361026365.55206437817577116.87703581556335
50.0961.55800540090950.00.0
60.00.00.0961.5580054009095
70.00.0961.55800540090950.0
827.3610008621493180.0488.7390354293703445.4579691093895
90.00.0958.15304530565123.4049600952582586
10228.23015882691573319.6946419484268385.8519475924573527.781257033108698
11126.33978437433498288.91715483167917144.90685036835222401.3942158265427
1275.84093782903855394.33439129895504381.8554545874742109.52722168544159

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MET28#MA0332.1-40.0005319260.2531970.2994396GTGGCTGGGGTCCTGTGG+
RUNX1#MA0002.2-20.0006312320.3004670.29943910GTGGCTGGGGTCGTCTGTGGTTT+
CRZ1#MA0285.100.002194311.044490.5453869GTGGCTGGGGTCGTGGCTTAG-
Pax4#MA0068.150.002839571.351630.54538612GTGGCTGGGGTCGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
YGR067C#MA0425.130.0040151.911140.54538611GTGGCTGGGGTCTGAAAAAGTGGGGT-
Klf4#MA0039.2-10.004445052.115850.54538610GTGGCTGGGGTCTGGGTGGGGC+
GAL4#MA0299.110.004566852.173820.54538612GTGGCTGGGGTCGAGTACTGTTCCCCG-
ACE2#MA0267.1-20.004598812.189030.5453867GTGGCTGGGGTCTGCTGGT-
SWI5#MA0402.1-20.007937283.778140.7905688GTGGCTGGGGTCTGCTGGTT+
INSM1#MA0155.1-10.008332783.96640.79056811GTGGCTGGGGTCTGTCAGGGGGCG+
SP1#MA0079.100.009736514.634580.79511710GTGGCTGGGGTCGGGGCGGGGT+
Tal1::Gata1#MA0140.1-40.01200985.716680.7951178GTGGCTGGGGTCCTGGTGGGGACAGATAAG+
MET4#MA0335.1-20.01283366.108780.7951178GTGGCTGGGGTCAACTGTGG+
MIG1#MA0337.1-40.01325216.307990.7951177GTGGCTGGGGTCGCGGGGG-
YPR022C#MA0436.1-30.01325216.307990.7951177GTGGCTGGGGTCCGTGGGG-
MET31#MA0333.1-30.01409366.708550.7951179GTGGCTGGGGTCGGTGTGGCG+
BAS1#MA0278.1110.01424736.781690.79511710GTGGCTGGGGTCTTGACTTGACTCTGGCTGTGC-
Zfx#MA0146.110.017468.310950.8894612GTGGCTGGGGTCCAGGCCTCGGCCCC-
ADR1#MA0268.1-40.01781278.478870.889467GTGGCTGGGGTCGTGGGGT-
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