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MacroAPE 1083:Motif CACNGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;6096;0;0!02;6096;0;0;0!03;0;6096;0;0!04;1524;1524;1524;1524!05;0;0;6096;0!06;0;0;0;6096 |macroape_1083_sample_pvalues=11376-118A8;0.7140...")
 
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.492844!10792-110H9;0.438546!10765-110E9;0.254834!10829-111D1;0.665017!10830-111D2;0.338839!10831-111D3;0.584022!10832-111D4;0.6023!10833-111D5;0.452089!10764-110E8;0.471198!10770-110F5;0.548669!10399-106A3;0.572975!10400-106A4;0.56953!10405-106A9;0.672236!10834-111D6;0.697638!10835-111D7;0.753565!10836-111D8;0.584214!10837-111D9;0.352768!10699-109G6;0.735909!10802-111A1;0.947761!10796-110I4;0.659024!10010-101C1;0.825376!10810-111A9;0.278285!10421-106C7;0.604869!10708-109H6;0.733826!12235-129G3;0.883885!12236-129G4;0.506729!12237-129G5;0.625362!10167-103B5;0.360291!10151-102I7;0.462518!10428-106D5;0.43409!10795-110I3;0.58515!10805-111A4;0.476435!10052-101G7;0.607251!10189-103D9;0.271302!10589-108D4;0.393725!10425-106D2;0.213816!10427-106D4;0.258674!10702-109G9;0.863662!10432-106D9;0.789661!10496-107C1;0.721281!10718-109I7;0.815039!10011-101C2;0.545404!10053-101G8;0.319249!10686-109F2;0.869529!10084-102B3;0.664685!10012-101C3;0.445079!10085-102B4;0.505686!10482-107A5;0.561898!10419-106C5;0.607865!10080-102A8;0.683233!10760-110E4;0.0760747!10709-109H7;0.674453!10710-109H8;0.82965!10703-109H1;0.288286!10719-109I8;0.256015!10642-109A3;0.969952!10177-103C6;0.588329!10164-103B2;0.423356!10173-103C2;0.497623!10166-103B4;0.659864!10083-102B2;0.641854!10188-103D8;0.714797!10552-107I3;0.469107!10553-107I4;0.507313!10013-101C4;0.295668!10536-107G5;0.257427!10618-108G6;0.838682!10423-106C9;0.761265!10785-110H2;0.478826!12238-129G6;0.387258!12239-129G7;0.760886!12240-129G8;0.889764!10416-106C2;0.389072!10801-110I9;0.402681!10766-110F1;0.522234!10824-111C5;0.502248!10825-111C6;0.501442!10826-111C7;0.564641!10454-106G4;0.604255!10409-106B4;0.426171!10638-108I8;0.718752!10636-108I6;0.265295!10513-107D9;0.692487!10420-106C6;0.806174!10082-102B1;0.918879!10014-101C5;0.409783!10070-101I7;0.524807!10452-106G2;0.582712!10453-106G3;0.906468!10449-106F8;0.986364!10042-101F6;0.955769!10069-101I6;0.459721!10193-103E4;0.544262!10631-108I1;0.558646!10438-106E6;0.299221!10488-107B2;0.65812!10196-103E7;0.543216!10071-101I8;0.390895!10071-101I8;0.444422!10041-101F5;0.753653!10451-106G1;0.299674!10450-106F9;0.500285!10604-108F1;0.668823!10605-108F2;0.769216!10606-108F3;0.682169!10603-108E9;0.679281!10497-107C2;0.625311!10448-106F7;0.698535!10643-109A4;0.650259!10426-106D3;0.563066!10431-106D8;0.823597!10197-103E8;0.65467!10443-106F2;0.578737!10815-111B5;0.800438!10816-111B6;0.688304!10817-111B7;0.743207!10015-101C6;0.674767!10410-106B5;0.4569!10054-101G9;0.852901!10758-110E2;0.624919!10711-109H9;0.62078!10040-101F4;0.806487!10470-106I2;0.509497!10415-106C1;0.722363!10198-103E9;0.92017!10614-108G2;0.461032!10612-108F9;0.338154!10549-107H9;0.568791!10615-108G3;0.510278!10487-107B1;0.0294882!10433-106E1;0.433225!10688-109F4;0.926324!10444-106F3;0.93551!10444-106F3;0.288559!10485-107A8;0.296765!10413-106B8;0.842097!10175-103C4;0.825695!10161-103A8;0.519237!12131-128D7;0.360217!10624-108H3;0.706103!10712-109I1;0.352278!10205-103F7;0.556944!10206-103F8;0.450037!10207-103F9;0.445541!10050-101G5;0.138867!10051-101G6;0.769699!10016-101C7;0.609813!10046-101G1;0.302724!10778-110G4;0.406911!10633-108I3;0.550754!10818-111B8;0.707929!10819-111B9;0.513978!10820-111C1;0.565891!10484-107A7;0.566275!10808-111A7;0.173566!10169-103B7;0.386525!10153-102I9;0.470367!13425-144D5;0.430487!13433-144E4;0.964346!13437-144E8;0.819216!11904-125F5;0.938821!11905-125F6;0.621444!10039-101F3;0.673319!10791-110H8;0.468968!10017-101C8;0.644083!10045-101F9;0.405373!10509-107D5;0.291527!10839-111E2;0.831835!10692-109F8;0.3778!10079-102A7;0.865483!10078-102A6;0.670286!10721-110A1;0.562233!10569-108B2;0.800358!10570-108B3;0.452599!10571-108B4;0.373266!10647-109A8;0.677906!10752-110D5;0.562041!10782-110G8;0.484098!10726-110A6;0.216899!10018-101C9;0.846505!10086-102B5;0.384971!10182-103D2;0.753814!10165-103B3;0.416877!10499-107C4;0.38405!10408-106B3;0.40038!10019-101D1;0.868395!10068-101I5;0.15984!10075-102A3;0.153057!10077-102A5;0.217988!10727-110A7;0.764576!10775-110G1;0.630795!10412-106B7;0.268604!12231-129F8;0.463143!12232-129F9;0.121247!12233-129G1;0.109341!12234-129G2;0.0954792!10414-106B9;0.19174!10170-103B8;0.938618!10183-103D3;0.535206!10150-102I6;0.623825!10174-103C3;0.488976!10155-103A2;0.493445!10038-101F2;0.485993!10838-111E1;0.397685!10759-110E3;0.373203!10514-107E1;0.826564!10465-106H6;0.912532!10691-109F7;0.903096!10843-111E6;0.776576!10844-111E7;0.151293!11747-123G1;0.810677!11748-123G2;0.959725!11749-123G3;0.942819!11750-123G4;0.836399!11751-123G5;0.89841!11840-124H4;0.541802!11752-123G6;0.319414!11753-123G7;0.780896!11754-123G8;0.793525!11755-123G9;0.720448!11756-123H1;0.88378!11833-124G6;0.324727!11760-123H5;0.643121!11836-124G9;0.336588!11758-123H3;0.930236!11835-124G8;0.711286!11762-123H7;0.962371!11838-124H2;0.974167!11757-123H2;0.943842!11759-123H4;0.693704!11761-123H6;0.534508!11842-124H6;0.585807!11837-124H1;0.437836!10568-108B1;0.920632!13230-141I8;0.065019!13231-141I9;0.835108!10696-109G3;0.882892!10493-107B7;0.920156!10494-107B8;0.475838!10850-111F4;0.820998!10851-111F5;0.3244!10852-111F6;0.680902!10853-111F7;0.161753!10854-111F8;0.177939!10855-111F9;0.775062!10856-111G1;0.403516!10847-111F1;0.355492!10846-111E9;0.655324!10848-111F2;0.858789!10845-111E8;0.762605!10857-111G2;0.16554!10858-111G3;0.343817!10156-103A3;0.327653!11901-125F2;0.474163!11902-125F3;0.901604!11903-125F4;0.833725!10689-109F5;0.748342!10648-109A9;0.119713!10784-110H1;0.659103!10744-110C6;0.843964!10772-110F7;0.430348!10474-106I6;0.65401!10600-108E6;0.511124!10684-109E9;0.861391!12226-129F3;0.390423!12227-129F4;0.911951!10508-107D4;0.59174!10539-107G8;0.618243!10607-108F4;0.525507!10555-107I6;0.668588!10774-110F9;0.506761!10637-108I7;0.848772!10663-109C6;0.45736!10728-110A8;0.820136!10729-110A9;0.63701!10430-106D7;0.392208!10730-110B1;0.774356!10813-111B3;0.859719!10812-111B2;0.504131!10037-101F1;0.402939!10172-103C1;0.486139!10163-103B1;0.580007!10076-102A4;0.472585!10073-102A1;0.483669!10036-101E9;0.652313!10195-103E6;0.465089!10277-104E7;0.549561!10434-106E2;0.581513!10550-107I1;0.917259!10545-107H5;0.622277!10544-107H4;0.893947!10704-109H2;0.827526!10510-107D6;0.952242!10558-107I9;0.292599!10020-101D2;0.649756!10732-110B3;0.133131!10049-101G4;0.925007!10698-109G5;0.54158!10437-106E5;0.680203!10417-106C3;0.575131!10035-101E8;0.927408!10171-103B9;0.471704!10157-103A4;0.513635!10034-101E7;0.493872!10072-101I9;0.473281!10199-103F1;0.720055!10200-103F2;0.359451!10697-109G4;0.59967!10723-110A3;0.45793!10179-103C8;0.207109!10160-103A7;0.541325!10180-103C9;0.445439!10162-103A9;0.395264!10021-101D3;0.39159!10840-111E3;0.40209!10706-109H4;0.343345!10033-101E6;0.79783!10032-101E5;0.450878!10490-107B4;0.491181!10439-106E7;0.510915!10022-101D4;0.976649!10176-103C5;0.273873!10469-106I1;0.498623!10067-101I4;0.595255!10411-106B6;0.570987!10471-106I3;0.47066!10030-101E3;0.014017!10475-106I7;0.319719!10787-110H4;0.331458!10477-106I9;0.902162!10695-109G2;0.581943!11771-123I7;0.120513!11772-123I8;0.799683!11773-123I9;0.864273!10093-102C3;0.293587!10442-106F1;0.457909!10442-106F1;0.786343!10201-103F3;0.752602!10639-108I9;0.31306!11843-124H7;0.93665!11841-124H5;0.322103!10693-109F9;0.33748!10436-106E4;0.492296!10483-107A6;0.78686!10282-104F3;0.224693!10023-101D5;0.781787!10066-101I3;0.559401!10065-101I2;0.718281!10800-110I8;0.721608!10610-108F7;0.774985!10841-111E4;0.828978!10541-107H1;0.316902!10842-111E5;0.960992!10562-108A4;0.385932!10024-101D6;0.634576!10064-101I1;0.739486!10609-108F6;0.883987!10048-101G3;0.637724!10781-110G7;0.327311!10181-103D1;0.977357!10159-103A6;0.480365!10056-101H2;0.337927!10737-110B8;0.514061!10025-101D7;0.552147!10044-101F8;0.142941!10424-106D1;0.200586!10463-106H4;0.375662!10616-108G4;0.703733!10486-107A9;0.583045!10062-101H8;0.573888!10202-103F4;0.216747!10158-103A5;0.560239!10441-106E9;0.36922!10031-101E4;0.619288!10063-101H9;0.510149!10063-101H9;0.662731!11763-123H8;0.892652!11765-123I1;0.569667!11768-123I4;0.986481!10807-111A6;0.637897!10790-110H7;0.792278!10798-110I6;0.747739!10786-110H3;0.557133!10591-108D6;0.634173!10593-108D8;0.71287!10590-108D5;0.665407!10026-101D8;0.869594!10096-102C6;0.122406!10168-103B6;0.78599!10154-103A1;0.462002!10209-103G2;0.421056!10061-101H7;0.692027!10027-101D9;0.7055!10043-101F7;0.910757!10783-110G9;0.655332!10028-101E1;0.727798!10060-101H6;0.275968!10203-103F5;0.363246!10059-101H5;0.622989!10047-101G2;0.727552!10029-101E2;0.385928!10058-101H4;0.294631!10418-106C4;0.509165!10492-107B6;0.855423!10694-109G1;0.610589!10797-110I5;0.115114!10057-101H3;0.274081!10100-102D1;0.669945!10055-101H1;0.20844!10204-103F6;0.235483!10191-103E2;0.21589!10563-108A5;0.662459
|name=motif_CACNGT
|name=motif_CACNGT
|tomtom_result=PPARG#MA0066.1;6;0.000679959;0.32366;0.391726;6;CACAGT;GTAGGTCACGGTGACCTACT;+!MET4#MA0335.1;1;0.00255967;1.2184;0.81227;6;CACAGT;CCACAGTT;-!ESR1#MA0112.1;5;0.00689178;3.28049;1;6;CACAGT;GGGGTCACGGTGACCTGG;-!MET31#MA0333.1;3;0.00873073;4.15583;1;6;CACAGT;CGCCACACT;-!ESR2#MA0258.1;6;0.00965798;4.5972;1;6;CACAGT;CAAGGTCACGGTGACCTG;+!MET28#MA0332.1;1;0.0116807;5.56001;1;5;CACAGT;CCACAG;-!odd#MA0454.1;0;0.0135305;6.44053;1;6;CACAGT;AACAGTAGCAG;+!myb.Ph3#MA0054.1;1;0.0163076;7.76243;1;6;CACAGT;TAACCGTTT;+!ovo#MA0126.1;-1;0.0170084;8.096;1;5;CACAGT;ACTGTTACT;-!prd#MA0239.1;-1;0.0170084;8.096;1;5;CACAGT;ACTGTTACT;-
}}
}}

Latest revision as of 13:01, 7 September 2012

Full Name: motif_CACNGT

Motif matrix
POACGT
010609600
026096000
030609600
041524152415241524
050060960
060006096

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PPARG#MA0066.160.0006799590.323660.3917266CACAGTGTAGGTCACGGTGACCTACT+
MET4#MA0335.110.002559671.21840.812276CACAGTCCACAGTT-
ESR1#MA0112.150.006891783.2804916CACAGTGGGGTCACGGTGACCTGG-
MET31#MA0333.130.008730734.1558316CACAGTCGCCACACT-
ESR2#MA0258.160.009657984.597216CACAGTCAAGGTCACGGTGACCTG+
MET28#MA0332.110.01168075.5600115CACAGTCCACAG-
odd#MA0454.100.01353056.4405316CACAGTAACAGTAGCAG+
myb.Ph3#MA0054.110.01630767.7624316CACAGTTAACCGTTT+
ovo#MA0126.1-10.01700848.09615CACAGTACTGTTACT-
prd#MA0239.1-10.01700848.09615CACAGTACTGTTACT-
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