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MacroAPE 1083:10-TCTBACKA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.658;0.658;56.588;600.096!2;73.696;514.556;69.09;0.658!3;88.172;27.636;0.658;541.534!4;0.658;208.586;258.594;190.162!5;549.43;0.658;30.926;...")
 
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4-107B8;0.59135!10850-111F4;0.861303!10851-111F5;0.92747!10852-111F6;0.806756!10853-111F7;0.776321!10854-111F8;0.988073!10855-111F9;0.474957!10856-111G1;0.188491!10847-111F1;0.640692!10846-111E9;0.0531767!10848-111F2;0.695538!10845-111E8;0.290799!10857-111G2;0.257836!10858-111G3;0.799395!10156-103A3;0.860689!11901-125F2;0.994337!11902-125F3;0.511365!11903-125F4;0.667329!10689-109F5;0.667964!10648-109A9;0.777469!10784-110H1;0.93034!10744-110C6;0.91186!10772-110F7;0.967019!10474-106I6;0.923945!10600-108E6;0.197289!10684-109E9;0.416728!12226-129F3;0.44375!12227-129F4;0.694795!10508-107D4;0.657603!10539-107G8;0.150833!10607-108F4;0.367147!10555-107I6;0.681067!10774-110F9;0.0441969!10637-108I7;0.623401!10663-109C6;0.386709!10728-110A8;0.666864!10729-110A9;0.326594!10430-106D7;0.839055!10730-110B1;0.789058!10813-111B3;0.332629!10812-111B2;0.737361!10037-101F1;0.38879!10172-103C1;0.978274!10163-103B1;0.841077!10076-102A4;0.967906!10073-102A1;0.96416!10036-101E9;0.710618!10195-103E6;0.952734!10277-104E7;0.993591!10434-106E2;0.77829!10550-107I1;0.901258!10545-107H5;0.992579!10544-107H4;0.52847!10704-109H2;0.869845!10510-107D6;0.382164!10558-107I9;0.412083!10020-101D2;0.560521!10732-110B3;0.56031!10049-101G4;0.39214!10698-109G5;0.480813!10437-106E5;0.229341!10417-106C3;0.068054!10035-101E8;0.934067!10171-103B9;0.990117!10157-103A4;0.831132!10034-101E7;0.979887!10072-101I9;0.981061!10199-103F1;0.753982!10200-103F2;0.0220578!10697-109G4;0.334715!10723-110A3;0.106603!10179-103C8;0.356158!10160-103A7;0.961841!10180-103C9;0.718075!10162-103A9;0.721311!10021-101D3;0.452334!10840-111E3;0.59625!10706-109H4;0.520241!10033-101E6;0.628696!10032-101E5;0.967938!10490-107B4;0.910519!10439-106E7;0.797683!10022-101D4;0.810954!10176-103C5;0.690162!10469-106I1;0.833483!10067-101I4;0.171248!10411-106B6;0.634362!10471-106I3;0.683825!10030-101E3;0.505217!10475-106I7;0.500953!10787-110H4;0.815855!10477-106I9;0.0395325!10695-109G2;0.0503552!11771-123I7;0.230492!11772-123I8;0.0745872!11773-123I9;0.218006!10093-102C3;0.0870132!10442-106F1;0.0309889!10442-106F1;0.251454!10201-103F3;0.340126!10639-108I9;0.325616!11843-124H7;0.426887!11841-124H5;0.692439!10693-109F9;0.981137!10436-106E4;0.610355!10483-107A6;0.590934!10282-104F3;0.20901!10023-101D5;0.505541!10066-101I3;0.420765!10065-101I2;0.661065!10800-110I8;0.360118!10610-108F7;0.511039!10841-111E4;0.257499!10541-107H1;0.0331334!10842-111E5;0.409255!10562-108A4;0.395707!10024-101D6;0.834774!10064-101I1;0.717935!10609-108F6;0.558945!10048-101G3;0.0688359!10781-110G7;0.905091!10181-103D1;0.244358!10159-103A6;0.721014!10056-101H2;0.840039!10737-110B8;0.774419!10025-101D7;0.27485!10044-101F8;0.316697!10424-106D1;0.559634!10463-106H4;0.976885!10616-108G4;0.6959!10486-107A9;0.934461!10062-101H8;0.228758!10202-103F4;0.604218!10158-103A5;0.0303036!10441-106E9;0.586444!10031-101E4;0.60642!10063-101H9;0.897224!10063-101H9;0.943747!11763-123H8;0.944779!11765-123I1;0.856196!11768-123I4;0.545737!10807-111A6;0.414102!10790-110H7;0.988354!10798-110I6;0.83281!10786-110H3;0.126965!10591-108D6;0.94004!10593-108D8;0.678039!10590-108D5;0.896697!10026-101D8;0.934824!10096-102C6;0.354408!10168-103B6;0.471444!10154-103A1;0.667507!10209-103G2;0.857691!10061-101H7;0.285345!10027-101D9;0.418179!10043-101F7;0.881534!10783-110G9;0.74326!10028-101E1;0.223771!10060-101H6;0.274587!10203-103F5;0.11561!10059-101H5;0.148488!10047-101G2;0.615806!10029-101E2;0.156449!10058-101H4;0.209186!10418-106C4;0.299754!10492-107B6;0.315958!10694-109G1;0.910541!10797-110I5;0.1885!10057-101H3;0.258682!10100-102D1;0.424732!10055-101H1;0.554938!10204-103F6;0.80239!10191-103E2;0.594128!10563-108A5;0.220122
|name=10-TCTBACKA,CNhs11049,BestGuess:SMAD3_f1_HM09(0.594452084885537),T:658.0(26.79%),B:8012.1(17.81%),P:1e-27
|name=10-TCTBACKA,CNhs11049,BestGuess:SMAD3_f1_HM09(0.594452084885537),T:658.0(26.79%),B:8012.1(17.81%),P:1e-27
|tomtom_result=YAP7#MA0419.1;1;0.00654378;3.11484;1;8;TCTGACGA;TGCTTACTAAT;-!Mafb#MA0117.1;0;0.0123809;5.89329;1;8;TCTGACGA;GCTGACGG;+
}}
}}

Latest revision as of 13:06, 7 September 2012

Full Name: 10-TCTBACKA,CNhs11049,BestGuess:SMAD3_f1_HM09(0.594452084885537),T:658.0(26.79%),B:8012.1(17.81%),P:1e-27

Motif matrix
POACGT
10.6580.65856.588600.096
273.696514.55669.090.658
388.17227.6360.658541.534
40.658208.586258.594190.162
5549.430.65830.92676.986
686.856541.5340.65828.952
70.6580.658338.212318.472
8423.75249.3586.85698.042

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP7#MA0419.110.006543783.1148418TCTGACGATGCTTACTAAT-
Mafb#MA0117.100.01238095.8932918TCTGACGAGCTGACGG+
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