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MacroAPE 1083:7-TGTTTCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;257.37;287.21;473.71;848.575!2;1.865;1.865;1736.315;124.955!3;35.435;5.595;59.68;1764.29!4;20.515;76.465;617.315;1150.705!5;462.52;234.99;35...")
 
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88001!10827-111C8;0.363062!10789-110H6;0.734113!10828-111C9;0.794871!10788-110H5;0.371564!10792-110H9;0.527838!10765-110E9;0.964339!10829-111D1;0.549104!10830-111D2;0.235688!10831-111D3;0.625325!10832-111D4;0.808072!10833-111D5;0.548345!10764-110E8;0.477746!10770-110F5;0.337622!10399-106A3;0.602809!10400-106A4;0.240911!10405-106A9;0.224793!10834-111D6;0.291738!10835-111D7;0.23568!10836-111D8;0.793644!10837-111D9;0.841958!10699-109G6;0.954724!10802-111A1;0.826945!10796-110I4;0.820233!10010-101C1;0.223043!10810-111A9;0.0331442!10421-106C7;0.00330953!10708-109H6;0.338928!12235-129G3;0.00761734!12236-129G4;0.479931!12237-129G5;0.477775!10167-103B5;0.613198!10151-102I7;0.619916!10428-106D5;0.487299!10795-110I3;0.836357!10805-111A4;0.384902!10052-101G7;0.0720362!10189-103D9;0.0804738!10589-108D4;0.0129779!10425-106D2;0.304966!10427-106D4;0.184818!10702-109G9;0.566416!10432-106D9;0.951075!10496-107C1;0.289593!10718-109I7;0.786807!10011-101C2;0.471547!10053-101G8;0.209774!10686-109F2;0.585442!10084-102B3;0.531063!10012-101C3;0.669683!10085-102B4;0.637609!10482-107A5;0.67812!10419-106C5;0.425639!10080-102A8;0.333405!10760-110E4;0.0431366!10709-109H7;0.179668!10710-109H8;0.636731!10703-109H1;0.192514!10719-109I8;0.0083823!10642-109A3;0.450585!10177-103C6;0.0451741!10164-103B2;0.570451!10173-103C2;0.451533!10166-103B4;0.682375!10083-102B2;0.511908!10188-103D8;0.789267!10552-107I3;0.601087!10553-107I4;0.112332!10013-101C4;0.888125!10536-107G5;0.0849416!10618-108G6;0.423764!10423-106C9;0.337962!10785-110H2;0.0713125!12238-129G6;0.461842!12239-129G7;0.0649964!12240-129G8;0.769982!10416-106C2;0.0262041!10801-110I9;0.249662!10766-110F1;0.970576!10824-111C5;0.952264!10825-111C6;0.222966!10826-111C7;0.273066!10454-106G4;0.251718!10409-106B4;0.323629!10638-108I8;0.771713!10636-108I6;0.0566619!10513-107D9;0.425571!10420-106C6;0.0261824!10082-102B1;0.558989!10014-101C5;0.0344735!10070-101I7;0.206976!10452-106G2;0.362263!10453-106G3;0.710658!10449-106F8;0.309368!10042-101F6;0.229664!10069-101I6;0.418354!10193-103E4;0.0820629!10631-108I1;0.743993!10438-106E6;0.200974!10488-107B2;0.639004!10196-103E7;0.0288608!10071-101I8;0.0918995!10071-101I8;0.450792!10041-101F5;0.607562!10451-106G1;0.0215163!10450-106F9;0.364088!10604-108F1;0.166972!10605-108F2;0.800177!10606-108F3;0.204065!10603-108E9;0.881416!10497-107C2;0.704412!10448-106F7;0.465622!10643-109A4;0.00354156!10426-106D3;0.0919148!10431-106D8;0.215436!10197-103E8;0.0601843!10443-106F2;0.0397487!10815-111B5;0.25891!10816-111B6;0.164397!10817-111B7;0.22814!10015-101C6;0.152287!10410-106B5;0.151433!10054-101G9;0.0278525!10758-110E2;0.419612!10711-109H9;0.142289!10040-101F4;0.160855!10470-106I2;0.572459!10415-106C1;0.524318!10198-103E9;0.271393!10614-108G2;0.0523411!10612-108F9;0.0825389!10549-107H9;0.528634!10615-108G3;0.0429303!10487-107B1;0.158452!10433-106E1;0.261861!10688-109F4;0.658184!10444-106F3;0.561835!10444-106F3;0.0255874!10485-107A8;0.0283374!10413-106B8;0.044745!10175-103C4;0.380165!10161-103A8;0.693099!12131-128D7;0.584853!10624-108H3;0.39785!10712-109I1;0.690801!10205-103F7;0.593572!10206-103F8;0.0830764!10207-103F9;0.173733!10050-101G5;0.0258689!10051-101G6;0.13673!10016-101C7;0.122961!10046-101G1;0.0996458!10778-110G4;0.0697009!10633-108I3;0.824473!10818-111B8;0.0539648!10819-111B9;0.0434125!10820-111C1;0.0305671!10484-107A7;0.0363055!10808-111A7;0.688061!10169-103B7;0.678939!10153-102I9;0.511893!13425-144D5;0.415372!13433-144E4;0.00352272!13437-144E8;0.00144382!11904-125F5;0.00100977!11905-125F6;0.9003!10039-101F3;0.58087!10791-110H8;0.482528!10017-101C8;0.092928!10045-101F9;0.110668!10509-107D5;0.0474242!10839-111E2;0.997948!10692-109F8;0.0320043!10079-102A7;0.116236!10078-102A6;0.230852!10721-110A1;0.253467!10569-108B2;0.0170386!10570-108B3;0.529482!10571-108B4;0.296858!10647-109A8;0.360034!10752-110D5;0.117721!10782-110G8;0.971122!10726-110A6;0.456876!10018-101C9;0.21684!10086-102B5;0.469274!10182-103D2;0.848797!10165-103B3;0.715184!10499-107C4;0.658493!10408-106B3;0.455559!10019-101D1;0.947542!10068-101I5;0.0182168!10075-102A3;0.0164543!10077-102A5;0.0152073!10727-110A7;0.0536234!10775-110G1;0.950111!10412-106B7;0.679427!12231-129F8;0.516958!12232-129F9;0.0645647!12233-129G1;0.0951077!12234-129G2;0.103436!10414-106B9;0.0722149!10170-103B8;0.266467!10183-103D3;0.700506!10150-102I6;0.710151!10174-103C3;0.460679!10155-103A2;0.413857!10038-101F2;0.347749!10838-111E1;0.484674!10759-110E3;0.152323!10514-107E1;0.212119!10465-106H6;0.243913!10691-109F7;0.0688033!10843-111E6;0.279284!10844-111E7;0.0267651!11747-123G1;0.0718394!11748-123G2;0.279502!11749-123G3;0.49495!11750-123G4;0.920869!11751-123G5;0.904018!11840-124H4;0.69586!11752-123G6;0.492902!11753-123G7;0.466934!11754-123G8;0.626034!11755-123G9;0.805093!11756-123H1;0.74898!11833-124G6;0.86496!11760-123H5;0.0578712!11836-124G9;0.993652!11758-123H3;0.718469!11835-124G8;0.741698!11762-123H7;0.923484!11838-124H2;0.900426!11757-123H2;0.782735!11759-123H4;0.297802!11761-123H6;0.673939!11842-124H6;0.615095!11837-124H1;0.714362!10568-108B1;0.861697!13230-141I8;0.157401!13231-141I9;0.761965!10696-109G3;0.711819!10493-107B7;0.245621!10494-107B8;0.198514!10850-111F4;0.283333!10851-111F5;0.00611396!10852-111F6;0.313104!10853-111F7;0.310693!10854-111F8;0.0556537!10855-111F9;0.170588!10856-111G1;0.073268!10847-111F1;0.285797!10846-111E9;0.110822!10848-111F2;0.0605801!10845-111E8;0.142349!10857-111G2;0.0560832!10858-111G3;0.0162619!10156-103A3;0.0820692!11901-125F2;0.480675!11902-125F3;0.893111!11903-125F4;0.848435!10689-109F5;0.697027!10648-109A9;0.348293!10784-110H1;0.295194!10744-110C6;0.385987!10772-110F7;0.616296!10474-106I6;0.674608!10600-108E6;0.815168!10684-109E9;0.566863!12226-129F3;0.242507!12227-129F4;0.0269038!10508-107D4;0.0598481!10539-107G8;0.069491!10607-108F4;0.0258521!10555-107I6;0.141966!10774-110F9;0.0353509!10637-108I7;0.170919!10663-109C6;0.288631!10728-110A8;0.361985!10729-110A9;0.529266!10430-106D7;0.936654!10730-110B1;0.481807!10813-111B3;0.00497958!10812-111B2;0.346016!10037-101F1;0.27675!10172-103C1;0.444901!10163-103B1;0.715316!10076-102A4;0.404131!10073-102A1;0.702864!10036-101E9;0.69603!10195-103E6;0.498793!10277-104E7;0.564215!10434-106E2;0.680343!10550-107I1;0.253445!10545-107H5;0.20577!10544-107H4;0.180856!10704-109H2;0.304533!10510-107D6;0.63891!10558-107I9;0.804297!10020-101D2;0.888022!10732-110B3;0.0778709!10049-101G4;0.0673968!10698-109G5;0.869035!10437-106E5;0.184271!10417-106C3;0.275075!10035-101E8;0.720665!10171-103B9;0.607161!10157-103A4;0.772906!10034-101E7;0.451364!10072-101I9;0.533296!10199-103F1;0.875943!10200-103F2;0.401439!10697-109G4;0.0980918!10723-110A3;0.581655!10179-103C8;0.193983!10160-103A7;0.89546!10180-103C9;0.942972!10162-103A9;0.200925!10021-101D3;0.086764!10840-111E3;0.0132394!10706-109H4;0.73958!10033-101E6;0.913101!10032-101E5;0.840436!10490-107B4;0.560809!10439-106E7;0.0699013!10022-101D4;0.625689!10176-103C5;0.12478!10469-106I1;0.611373!10067-101I4;0.20522!10411-106B6;0.620847!10471-106I3;0.0710392!10030-101E3;0.345422!10475-106I7;0.265274!10787-110H4;0.0260522!10477-106I9;0.135869!10695-109G2;0.613028!11771-123I7;0.481872!11772-123I8;0.821265!11773-123I9;0.772188!10093-102C3;0.442797!10442-106F1;0.0837767!10442-106F1;0.0332843!10201-103F3;0.122627!10639-108I9;0.139381!11843-124H7;0.826141!11841-124H5;0.0299801!10693-109F9;0.0259025!10436-106E4;0.196779!10483-107A6;0.344142!10282-104F3;0.234948!10023-101D5;0.119468!10066-101I3;0.0510585!10065-101I2;0.123858!10800-110I8;0.147449!10610-108F7;0.0898561!10841-111E4;0.0145704!10541-107H1;0.0567926!10842-111E5;0.34461!10562-108A4;0.0422158!10024-101D6;0.30106!10064-101I1;0.195622!10609-108F6;0.831431!10048-101G3;0.170642!10781-110G7;0.182651!10181-103D1;0.265818!10159-103A6;0.676581!10056-101H2;0.447077!10737-110B8;0.597417!10025-101D7;0.958739!10044-101F8;0.0154748!10424-106D1;0.00522287!10463-106H4;0.94074!10616-108G4;0.417652!10486-107A9;0.204571!10062-101H8;0.506754!10202-103F4;0.3182!10158-103A5;0.0704612!10441-106E9;0.511635!10031-101E4;0.123951!10063-101H9;0.512699!10063-101H9;0.744675!11763-123H8;0.469796!11765-123I1;0.92881!11768-123I4;0.760847!10807-111A6;0.640132!10790-110H7;0.0356059!10798-110I6;0.0261012!10786-110H3;0.0244218!10591-108D6;0.0716536!10593-108D8;0.0191692!10590-108D5;0.0300192!10026-101D8;0.0541207!10096-102C6;0.340551!10168-103B6;0.827023!10154-103A1;0.781004!10209-103G2;0.486754!10061-101H7;0.0456299!10027-101D9;0.145806!10043-101F7;0.126481!10783-110G9;0.00506085!10028-101E1;0.0877259!10060-101H6;0.0595547!10203-103F5;0.0386864!10059-101H5;0.0560787!10047-101G2;0.0866546!10029-101E2;0.00108235!10058-101H4;0.0172659!10418-106C4;0.103653!10492-107B6;0.241441!10694-109G1;0.0547088!10797-110I5;0.670575!10057-101H3;0.963664!10100-102D1;0.220214!10055-101H1;0.0198389!10204-103F6;0.163127!10191-103E2;0.05311!10563-108A5;0.0658519
|name=7-TGTTTCT,CNhs13224,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.743952126212434),T:1865.0(72.43%),B:28110.1(60.79%),P:1e-34
|name=7-TGTTTCT,CNhs13224,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.743952126212434),T:1865.0(72.43%),B:28110.1(60.79%),P:1e-34
|tomtom_result=ovo#MA0126.1;2;0.000111099;0.0528829;0.0528829;7;TGTTTCT;ACTGTTACT;-!prd#MA0239.1;2;0.000111099;0.0528829;0.0528829;7;TGTTTCT;ACTGTTACT;-!STE12#MA0393.1;0;0.000876927;0.417417;0.278278;7;TGTTTCT;TGTTTCA;-!RFX1#MA0365.1;0;0.00715299;3.40482;1;7;TGTTTCT;GGTTGCTA;+!CUP9#MA0288.1;2;0.0128973;6.1391;1;7;TGTTTCT;AATGTGTCA;-!che-1#MA0260.1;0;0.0137167;6.52916;1;6;TGTTTCT;GGTTTC;-!mirr#MA0233.1;0;0.0156249;7.43747;1;5;TGTTTCT;TGTTT;-!ara#MA0210.1;0;0.0199814;9.51116;1;5;TGTTTCT;TGTTA;-
}}
}}

Latest revision as of 13:12, 7 September 2012

Full Name: 7-TGTTTCT,CNhs13224,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.743952126212434),T:1865.0(72.43%),B:28110.1(60.79%),P:1e-34

Motif matrix
POACGT
1257.37287.21473.71848.575
21.8651.8651736.315124.955
335.4355.59559.681764.29
420.51576.465617.3151150.705
5462.52234.99359.945809.41
61.8651859.4051.8651.865
7665.80550.355123.091025.75

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ovo#MA0126.120.0001110990.05288290.05288297TGTTTCTACTGTTACT-
prd#MA0239.120.0001110990.05288290.05288297TGTTTCTACTGTTACT-
STE12#MA0393.100.0008769270.4174170.2782787TGTTTCTTGTTTCA-
RFX1#MA0365.100.007152993.4048217TGTTTCTGGTTGCTA+
CUP9#MA0288.120.01289736.139117TGTTTCTAATGTGTCA-
che-1#MA0260.100.01371676.5291616TGTTTCTGGTTTC-
mirr#MA0233.100.01562497.4374715TGTTTCTTGTTT-
ara#MA0210.100.01998149.5111615TGTTTCTTGTTA-
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