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MacroAPE 1083:6-CTTGTGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.297;2290.109;2.297;2.297!2;498.449;2.297;413.46;1382.794!3;2.297;939.473;2.297;1352.933!4;509.934;2.297;1782.472;2.297!5;2.297;493.855;2.2...")
 
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27326!11368-117I9;0.256258!11440-118H9;0.0838457!11532-120A2;0.0192446!11693-123A1;0.000162815!11292-117A5;0.000175859!11369-118A1;0.0272208!11441-118I1;0.000574877!10007-101B4;0.00208195!11520-119H8;0.331335!11600-120H7;0.00062188!11681-122H7;0.00242008!11216-116B1;0.00290042!12179-129A1;0.0738607!12180-129A2;0.00312483!12181-129A3;0.00816493!12176-128I7;0.00884589!12177-128I8;0.00246455!12182-129A4;0.00928221!12183-129A5;0.00393386!12184-129A6;0.00605085!10809-111A8;0.00860203!10597-108E3;0.0311232!10717-109I6;0.733112!10455-106G5;0.512036!10534-107G3;0.0770507!10429-106D6;0.0379928!10464-106H5;0.0132883!10827-111C8;0.0561417!10789-110H6;0.110208!10828-111C9;0.0519976!10788-110H5;0.0268319!10792-110H9;0.115007!10765-110E9;0.00863716!10829-111D1;0.0866847!10830-111D2;0.0129575!10831-111D3;0.00457055!10832-111D4;0.0942592!10833-111D5;0.031108!10764-110E8;0.052312!10770-110F5;0.0052921!10399-106A3;0.0215135!10400-106A4;0.0125435!10405-106A9;0.00881277!10834-111D6;0.00640411!10835-111D7;0.000291246!10836-111D8;0.00602717!10837-111D9;0.0151613!10699-109G6;0.150288!10802-111A1;0.0318589!10796-110I4;0.0224349!10010-101C1;0.689201!10810-111A9;0.728811!10421-106C7;0.071801!10708-109H6;0.266914!12235-129G3;0.338129!12236-129G4;0.414081!12237-129G5;0.498235!10167-103B5;0.877344!10151-102I7;0.575539!10428-106D5;0.412233!10795-110I3;0.559517!10805-111A4;0.0582771!10052-101G7;0.483726!10189-103D9;0.0480524!10589-108D4;0.414151!10425-106D2;0.346618!10427-106D4;0.0738276!10702-109G9;0.000538905!10432-106D9;0.0687393!10496-107C1;0.733449!10718-109I7;0.718748!10011-101C2;0.172417!10053-101G8;0.309158!10686-109F2;0.0314188!10084-102B3;0.532697!10012-101C3;0.287614!10085-102B4;0.38679!10482-107A5;0.23942!10419-106C5;0.0307924!10080-102A8;0.940722!10760-110E4;0.620242!10709-109H7;0.733317!10710-109H8;0.940978!10703-109H1;0.9794!10719-109I8;0.273554!10642-109A3;0.102351!10177-103C6;0.154698!10164-103B2;0.437965!10173-103C2;0.393159!10166-103B4;0.732229!10083-102B2;0.476929!10188-103D8;0.415531!10552-107I3;0.30845!10553-107I4;0.0512079!10013-101C4;0.389249!10536-107G5;0.103349!10618-108G6;0.00210052!10423-106C9;0.438922!10785-110H2;0.733694!12238-129G6;0.401364!12239-129G7;0.498171!12240-129G8;0.0527446!10416-106C2;0.316388!10801-110I9;0.473762!10766-110F1;0.16585!10824-111C5;0.00409106!10825-111C6;0.158537!10826-111C7;0.153065!10454-106G4;0.15403!10409-106B4;0.0307064!10638-108I8;0.0206444!10636-108I6;0.53047!10513-107D9;0.46917!10420-106C6;0.387444!10082-102B1;0.0467112!10014-101C5;0.0253705!10070-101I7;0.218096!10452-106G2;0.277295!10453-106G3;0.00426568!10449-106F8;0.0278159!10042-101F6;0.0409328!10069-101I6;0.372601!10193-103E4;0.0681322!10631-108I1;0.382815!10438-106E6;0.0315419!10488-107B2;0.585357!10196-103E7;0.0260521!10071-101I8;0.302328!10071-101I8;0.0269329!10041-101F5;0.277121!10451-106G1;0.520279!10450-106F9;0.0883093!10604-108F1;0.115431!10605-108F2;0.121589!10606-108F3;0.580378!10603-108E9;0.0802839!10497-107C2;0.388268!10448-106F7;0.76562!10643-109A4;0.591127!10426-106D3;0.823322!10431-106D8;0.428619!10197-103E8;0.60256!10443-106F2;0.0979373!10815-111B5;0.352056!10816-111B6;0.60576!10817-111B7;0.467668!10015-101C6;0.65529!10410-106B5;0.0267877!10054-101G9;0.00259804!10758-110E2;0.142165!10711-109H9;0.981901!10040-101F4;0.309844!10470-106I2;0.468906!10415-106C1;0.572417!10198-103E9;0.709726!10614-108G2;0.0676176!10612-108F9;0.978861!10549-107H9;0.658471!10615-108G3;0.02233!10487-107B1;0.00652825!10433-106E1;0.00852984!10688-109F4;0.045644!10444-106F3;0.368233!10444-106F3;0.891168!10485-107A8;0.877505!10413-106B8;0.299213!10175-103C4;0.0128928!10161-103A8;0.434123!12131-128D7;0.480344!10624-108H3;0.000901373!10712-109I1;0.84908!10205-103F7;0.0527615!10206-103F8;0.13447!10207-103F9;0.0839476!10050-101G5;0.266909!10051-101G6;0.0796423!10016-101C7;0.0483744!10046-101G1;0.223518!10778-110G4;0.296939!10633-108I3;0.00563115!10818-111B8;0.00453408!10819-111B9;0.134839!10820-111C1;0.122866!10484-107A7;0.117321!10808-111A7;0.0936319!10169-103B7;0.0445519!10153-102I9;0.446185!13425-144D5;0.366063!13433-144E4;0.433234!13437-144E8;0.509382!11904-125F5;0.494524!11905-125F6;0.0654032!10039-101F3;0.15722!10791-110H8;0.409214!10017-101C8;0.837844!10045-101F9;0.855479!10509-107D5;0.332583!10839-111E2;0.0519428!10692-109F8;0.337721!10079-102A7;0.830129!10078-102A6;0.291797!10721-110A1;0.0763863!10569-108B2;0.930866!10570-108B3;0.233922!10571-108B4;0.0875359!10647-109A8;0.23859!10752-110D5;0.00965844!10782-110G8;0.125428!10726-110A6;0.939749!10018-101C9;0.501458!10086-102B5;0.510922!10182-103D2;0.367231!10165-103B3;0.304779!10499-107C4;0.326745!10408-106B3;0.0054226!10019-101D1;0.322557!10068-101I5;0.477044!10075-102A3;0.325335!10077-102A5;0.453828!10727-110A7;0.363529!10775-110G1;0.00612109!10412-106B7;0.0314434!12231-129F8;0.669915!12232-129F9;0.481081!12233-129G1;0.669178!12234-129G2;0.49773!10414-106B9;0.283476!10170-103B8;0.0118725!10183-103D3;0.51666!10150-102I6;0.416365!10174-103C3;0.453173!10155-103A2;0.274155!10038-101F2;0.337023!10838-111E1;0.244318!10759-110E3;0.369639!10514-107E1;0.516248!10465-106H6;1.34147e-06!10691-109F7;0.000513235!10843-111E6;0.0178985!10844-111E7;0.399569!11747-123G1;0.689179!11748-123G2;0.00684796!11749-123G3;0.181324!11750-123G4;0.01135!11751-123G5;0.513913!11840-124H4;0.615368!11752-123G6;0.516505!11753-123G7;0.740639!11754-123G8;0.356482!11755-123G9;0.037353!11756-123H1;0.0416358!11833-124G6;0.0078936!11760-123H5;0.365962!11836-124G9;0.0125149!11758-123H3;0.000580227!11835-124G8;0.0010788!11762-123H7;0.230526!11838-124H2;0.0221041!11757-123H2;0.0202071!11759-123H4;0.0117856!11761-123H6;0.733878!11842-124H6;0.00935507!11837-124H1;0.408541!10568-108B1;0.0361892!13230-141I8;0.163101!13231-141I9;0.220027!10696-109G3;0.227404!10493-107B7;0.583691!10494-107B8;0.328094!10850-111F4;0.0581273!10851-111F5;0.838778!10852-111F6;0.112433!10853-111F7;0.112918!10854-111F8;0.856038!10855-111F9;0.525319!10856-111G1;3.20497e-05!10847-111F1;0.285864!10846-111E9;0.0731991!10848-111F2;0.0586673!10845-111E8;0.303396!10857-111G2;0.0801839!10858-111G3;0.0913509!10156-103A3;0.478182!11901-125F2;0.426363!11902-125F3;0.1555!11903-125F4;0.254569!10689-109F5;0.13676!10648-109A9;0.0320394!10784-110H1;0.413085!10744-110C6;0.657073!10772-110F7;0.388786!10474-106I6;0.0843604!10600-108E6;0.0101478!10684-109E9;0.500718!12226-129F3;0.0632661!12227-129F4;0.966727!10508-107D4;0.337114!10539-107G8;0.889596!10607-108F4;0.291804!10555-107I6;0.19748!10774-110F9;0.593254!10637-108I7;0.360714!10663-109C6;0.174913!10728-110A8;0.0696148!10729-110A9;0.163555!10430-106D7;0.0226276!10730-110B1;0.0524953!10813-111B3;0.800399!10812-111B2;0.00477344!10037-101F1;1.69594e-05!10172-103C1;0.387674!10163-103B1;0.461237!10076-102A4;0.39937!10073-102A1;0.440211!10036-101E9;0.347117!10195-103E6;0.321767!10277-104E7;0.372071!10434-106E2;0.589686!10550-107I1;0.75462!10545-107H5;0.542303!10544-107H4;0.522178!10704-109H2;0.638762!10510-107D6;0.951991!10558-107I9;0.392501!10020-101D2;0.000753597!10732-110B3;0.242314!10049-101G4;0.315788!10698-109G5;0.591087!10437-106E5;0.138674!10417-106C3;0.246973!10035-101E8;0.983139!10171-103B9;0.41419!10157-103A4;0.455426!10034-101E7;0.474828!10072-101I9;0.395237!10199-103F1;0.435226!10200-103F2;0.309404!10697-109G4;0.0586515!10723-110A3;0.000122644!10179-103C8;0.685334!10160-103A7;0.982955!10180-103C9;0.883037!10162-103A9;0.784261!10021-101D3;0.643598!10840-111E3;0.477029!10706-109H4;0.00558717!10033-101E6;0.633106!10032-101E5;0.360565!10490-107B4;0.349806!10439-106E7;0.845741!10022-101D4;0.969142!10176-103C5;0.15945!10469-106I1;0.406269!10067-101I4;0.0238078!10411-106B6;0.0287398!10471-106I3;0.763409!10030-101E3;0.0514253!10475-106I7;0.375308!10787-110H4;0.167851!10477-106I9;0.0211779!10695-109G2;0.148093!11771-123I7;0.0944472!11772-123I8;0.167407!11773-123I9;0.139996!10093-102C3;0.404284!10442-106F1;0.289774!10442-106F1;6.97743e-08!10201-103F3;9.31039e-08!10639-108I9;0.117576!11843-124H7;0.100637!11841-124H5;0.869342!10693-109F9;0.315875!10436-106E4;0.502841!10483-107A6;0.296663!10282-104F3;0.931912!10023-101D5;0.745797!10066-101I3;0.766289!10065-101I2;0.040772!10800-110I8;0.0421318!10610-108F7;0.0517449!10841-111E4;0.175439!10541-107H1;0.00115937!10842-111E5;0.0473422!10562-108A4;0.32141!10024-101D6;0.152879!10064-101I1;0.151632!10609-108F6;0.050243!10048-101G3;0.418009!10781-110G7;0.312623!10181-103D1;0.0032757!10159-103A6;0.408299!10056-101H2;0.787159!10737-110B8;0.0780838!10025-101D7;0.232808!10044-101F8;0.349948!10424-106D1;0.842631!10463-106H4;0.00037826!10616-108G4;0.703959!10486-107A9;0.535716!10062-101H8;0.039768!10202-103F4;0.0239714!10158-103A5;0.22812!10441-106E9;0.638277!10031-101E4;0.0573886!10063-101H9;0.320538!10063-101H9;0.378454!11763-123H8;0.0435665!11765-123I1;0.00248514!11768-123I4;0.0638067!10807-111A6;0.00971911!10790-110H7;0.701112!10798-110I6;0.755081!10786-110H3;0.565819!10591-108D6;0.570181!10593-108D8;0.245981!10590-108D5;0.0936936!10026-101D8;0.620998!10096-102C6;0.215921!10168-103B6;0.872362!10154-103A1;0.3774!10209-103G2;0.512827!10061-101H7;0.0582671!10027-101D9;0.0300052!10043-101F7;0.235671!10783-110G9;0.856217!10028-101E1;0.857616!10060-101H6;0.829294!10203-103F5;0.0871624!10059-101H5;0.0493571!10047-101G2;0.0451535!10029-101E2;0.149296!10058-101H4;0.0620123!10418-106C4;0.0525014!10492-107B6;0.984799!10694-109G1;0.1427!10797-110I5;0.249724!10057-101H3;0.213196!10100-102D1;0.0440948!10055-101H1;0.250594!10204-103F6;0.012966!10191-103E2;0.798524!10563-108A5;0.118849
|name=6-CTTGTGA,CNhs13465,BestGuess:TFEB_f1_HM09(0.737483403755351),T:2297.0(33.02%),B:9878.5(23.51%),P:1e-71
|name=6-CTTGTGA,CNhs13465,BestGuess:TFEB_f1_HM09(0.737483403755351),T:2297.0(33.02%),B:9878.5(23.51%),P:1e-71
|tomtom_result=INO2#MA0321.1;1;0.00123384;0.587309;0.67731;7;CTTGTGA;GCATGTGAA;+!INO4#MA0322.1;1;0.00142292;0.67731;0.67731;7;CTTGTGA;GCATGTGAA;+!TYE7#MA0409.1;0;0.00256299;1.21998;0.813322;7;CTTGTGA;CACGTGA;+!CBF1#MA0281.1;1;0.00519077;2.47081;1;7;CTTGTGA;GCACGTGA;+!USF1#MA0093.1;0;0.0124561;5.92908;1;7;CTTGTGA;CACGTGG;+!Mycn#MA0104.1;0;0.0141937;6.75619;1;6;CTTGTGA;CACGTG;+
}}
}}

Latest revision as of 13:16, 7 September 2012

Full Name: 6-CTTGTGA,CNhs13465,BestGuess:TFEB_f1_HM09(0.737483403755351),T:2297.0(33.02%),B:9878.5(23.51%),P:1e-71

Motif matrix
POACGT
12.2972290.1092.2972.297
2498.4492.297413.461382.794
32.297939.4732.2971352.933
4509.9342.2971782.4722.297
52.297493.8552.2971798.551
62.297771.7921520.6142.297
72290.1092.2972.2972.297

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
INO2#MA0321.110.001233840.5873090.677317CTTGTGAGCATGTGAA+
INO4#MA0322.110.001422920.677310.677317CTTGTGAGCATGTGAA+
TYE7#MA0409.100.002562991.219980.8133227CTTGTGACACGTGA+
CBF1#MA0281.110.005190772.4708117CTTGTGAGCACGTGA+
USF1#MA0093.100.01245615.9290817CTTGTGACACGTGG+
Mycn#MA0104.100.01419376.7561916CTTGTGACACGTG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:6-CTTGTGA&oldid=2133943"