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MacroAPE 1083:GGGGGAAAGAAA,motif661: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;81.069;66.45;1129.65;51.831!2;90.372;43.857;1133.637;61.134!3;93.03;39.87;1033.962;162.138!4;112.965;25.251;1129.65;61.134!5;45.186;132.9;11...")
 
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44!10789-110H6;0.189879!10828-111C9;0.511731!10788-110H5;0.491606!10792-110H9;0.860471!10765-110E9;0.467384!10829-111D1;0.537379!10830-111D2;0.221211!10831-111D3;0.740804!10832-111D4;0.415056!10833-111D5;0.098057!10764-110E8;0.24664!10770-110F5;0.954266!10399-106A3;0.793297!10400-106A4;0.916086!10405-106A9;0.790874!10834-111D6;0.852223!10835-111D7;0.213344!10836-111D8;0.267888!10837-111D9;0.349383!10699-109G6;0.405959!10802-111A1;0.250185!10796-110I4;0.486419!10010-101C1;0.23625!10810-111A9;0.00485995!10421-106C7;0.00157241!10708-109H6;0.0737474!12235-129G3;0.096045!12236-129G4;0.82291!12237-129G5;0.941177!10167-103B5;0.954558!10151-102I7;0.0690001!10428-106D5;0.0323562!10795-110I3;0.695025!10805-111A4;0.00820049!10052-101G7;0.143332!10189-103D9;0.00686735!10589-108D4;0.0564214!10425-106D2;0.103954!10427-106D4;0.450221!10702-109G9;0.00444347!10432-106D9;0.90189!10496-107C1;0.0240203!10718-109I7;0.00825396!10011-101C2;0.633933!10053-101G8;0.0208045!10686-109F2;0.370957!10084-102B3;0.322165!10012-101C3;0.0426835!10085-102B4;0.0268907!10482-107A5;0.115331!10419-106C5;0.604613!10080-102A8;0.0718963!10760-110E4;0.175291!10709-109H7;0.360481!10710-109H8;0.0101346!10703-109H1;0.165408!10719-109I8;0.234027!10642-109A3;0.0255071!10177-103C6;0.754063!10164-103B2;0.0311173!10173-103C2;0.0249914!10166-103B4;0.130176!10083-102B2;0.111667!10188-103D8;0.0725527!10552-107I3;0.0522627!10553-107I4;0.000160449!10013-101C4;0.633193!10536-107G5;0.19954!10618-108G6;0.834563!10423-106C9;0.00269952!10785-110H2;0.0154952!12238-129G6;0.456215!12239-129G7;0.567283!12240-129G8;0.385866!10416-106C2;0.251815!10801-110I9;0.0930184!10766-110F1;0.474045!10824-111C5;0.454917!10825-111C6;0.00856902!10826-111C7;0.0165427!10454-106G4;0.0325453!10409-106B4;0.0132591!10638-108I8;0.19013!10636-108I6;0.0123203!10513-107D9;0.106106!10420-106C6;0.257083!10082-102B1;0.0758902!10014-101C5;0.0837032!10070-101I7;0.00710505!10452-106G2;0.133029!10453-106G3;0.096131!10449-106F8;0.136945!10042-101F6;0.0967958!10069-101I6;0.0390031!10193-103E4;0.139111!10631-108I1;0.0334758!10438-106E6;0.0283762!10488-107B2;0.133788!10196-103E7;0.0352515!10071-101I8;0.0170096!10071-101I8;0.181757!10041-101F5;0.171071!10451-106G1;0.0498969!10450-106F9;0.0967135!10604-108F1;0.126218!10605-108F2;0.0854933!10606-108F3;0.00636726!10603-108E9;0.168061!10497-107C2;0.20625!10448-106F7;0.193283!10643-109A4;0.000699615!10426-106D3;0.053584!10431-106D8;0.207184!10197-103E8;0.209173!10443-106F2;0.0793112!10815-111B5;0.346825!10816-111B6;0.0170128!10817-111B7;0.00746655!10015-101C6;0.015969!10410-106B5;0.0674987!10054-101G9;0.385142!10758-110E2;0.549963!10711-109H9;0.293502!10040-101F4;0.0781287!10470-106I2;0.0398514!10415-106C1;0.054838!10198-103E9;0.409713!10614-108G2;0.0325183!10612-108F9;0.910239!10549-107H9;0.127753!10615-108G3;0.0737168!10487-107B1;0.0908887!10433-106E1;0.00662175!10688-109F4;0.432382!10444-106F3;0.229464!10444-106F3;0.841675!10485-107A8;0.522885!10413-106B8;0.193379!10175-103C4;0.795425!10161-103A8;0.0304526!12131-128D7;0.0135641!10624-108H3;0.201985!10712-109I1;0.554821!10205-103F7;0.0515232!10206-103F8;0.090324!10207-103F9;0.0115442!10050-101G5;0.0875687!10051-101G6;0.266331!10016-101C7;0.0857354!10046-101G1;0.0120285!10778-110G4;0.0378635!10633-108I3;0.290968!10818-111B8;0.667207!10819-111B9;0.00482266!10820-111C1;0.00823545!10484-107A7;0.0090697!10808-111A7;0.155296!10169-103B7;0.0135069!10153-102I9;0.0295504!13425-144D5;0.0389643!13433-144E4;0.984674!13437-144E8;0.79871!11904-125F5;0.959657!11905-125F6;0.539272!10039-101F3;0.337823!10791-110H8;0.0527174!10017-101C8;0.639881!10045-101F9;0.00678843!10509-107D5;0.302252!10839-111E2;0.10174!10692-109F8;0.0732804!10079-102A7;0.285992!10078-102A6;0.0127411!10721-110A1;0.0390092!10569-108B2;0.103029!10570-108B3;0.934631!10571-108B4;0.822106!10647-109A8;0.985761!10752-110D5;0.101493!10782-110G8;0.918816!10726-110A6;0.564098!10018-101C9;0.317522!10086-102B5;0.898375!10182-103D2;0.349521!10165-103B3;0.0651591!10499-107C4;0.0211747!10408-106B3;0.926789!10019-101D1;0.337455!10068-101I5;0.00681017!10075-102A3;0.146284!10077-102A5;0.0179235!10727-110A7;0.167613!10775-110G1;0.207298!10412-106B7;0.0775453!12231-129F8;0.177623!12232-129F9;0.162864!12233-129G1;0.163193!12234-129G2;0.308483!10414-106B9;0.453905!10170-103B8;0.194198!10183-103D3;0.0574913!10150-102I6;0.0620936!10174-103C3;0.030399!10155-103A2;0.118212!10038-101F2;0.0502373!10838-111E1;0.0508752!10759-110E3;0.96181!10514-107E1;0.932645!10465-106H6;0.276258!10691-109F7;0.283821!10843-111E6;0.0846543!10844-111E7;0.678814!11747-123G1;0.60916!11748-123G2;0.509234!11749-123G3;0.957897!11750-123G4;0.864416!11751-123G5;0.915695!11840-124H4;0.402626!11752-123G6;0.659954!11753-123G7;0.951294!11754-123G8;0.756514!11755-123G9;0.522544!11756-123H1;0.655946!11833-124G6;0.866282!11760-123H5;0.669473!11836-124G9;0.838521!11758-123H3;0.15216!11835-124G8;0.740708!11762-123H7;0.465474!11838-124H2;0.218265!11757-123H2;0.330004!11759-123H4;0.478889!11761-123H6;0.68049!11842-124H6;0.728088!11837-124H1;0.501318!10568-108B1;0.107007!13230-141I8;0.0260334!13231-141I9;0.735908!10696-109G3;0.915371!10493-107B7;0.626329!10494-107B8;0.367504!10850-111F4;0.807803!10851-111F5;0.146468!10852-111F6;0.912223!10853-111F7;0.714934!10854-111F8;0.0308313!10855-111F9;0.752586!10856-111G1;0.388023!10847-111F1;0.466946!10846-111E9;0.64904!10848-111F2;0.393634!10845-111E8;0.2181!10857-111G2;0.374438!10858-111G3;0.125689!10156-103A3;0.420315!11901-125F2;0.0270954!11902-125F3;0.942955!11903-125F4;0.785623!10689-109F5;0.731471!10648-109A9;0.0335189!10784-110H1;0.265258!10744-110C6;0.53021!10772-110F7;0.296315!10474-106I6;0.644584!10600-108E6;0.0357548!10684-109E9;0.0931838!12226-129F3;0.735429!12227-129F4;0.635589!10508-107D4;0.377852!10539-107G8;0.861217!10607-108F4;0.55717!10555-107I6;0.018137!10774-110F9;0.693837!10637-108I7;0.00317083!10663-109C6;0.017068!10728-110A8;0.0171547!10729-110A9;0.0193882!10430-106D7;0.803787!10730-110B1;0.0969888!10813-111B3;0.958026!10812-111B2;0.524844!10037-101F1;0.475012!10172-103C1;0.0375256!10163-103B1;0.0707693!10076-102A4;0.0280897!10073-102A1;0.0492493!10036-101E9;0.168503!10195-103E6;0.057748!10277-104E7;0.0321212!10434-106E2;0.132109!10550-107I1;0.0323364!10545-107H5;0.0584975!10544-107H4;0.162641!10704-109H2;0.733102!10510-107D6;0.649874!10558-107I9;0.526332!10020-101D2;0.464294!10732-110B3;0.299037!10049-101G4;0.288666!10698-109G5;0.362904!10437-106E5;0.040674!10417-106C3;0.0207603!10035-101E8;0.0258551!10171-103B9;0.039212!10157-103A4;0.0648549!10034-101E7;0.0319504!10072-101I9;0.0440663!10199-103F1;0.264285!10200-103F2;0.459239!10697-109G4;0.100201!10723-110A3;0.0851213!10179-103C8;0.850725!10160-103A7;0.214997!10180-103C9;0.162503!10162-103A9;0.31207!10021-101D3;0.135883!10840-111E3;0.440224!10706-109H4;0.00632799!10033-101E6;0.458618!10032-101E5;0.038809!10490-107B4;0.0543071!10439-106E7;0.193415!10022-101D4;0.0529071!10176-103C5;0.0358612!10469-106I1;0.0324188!10067-101I4;0.528459!10411-106B6;0.102118!10471-106I3;0.178041!10030-101E3;0.0144781!10475-106I7;0.268251!10787-110H4;0.316902!10477-106I9;0.145133!10695-109G2;0.0632844!11771-123I7;0.871189!11772-123I8;0.64758!11773-123I9;0.408144!10093-102C3;0.211901!10442-106F1;0.299635!10442-106F1;0.0389505!10201-103F3;0.0469032!10639-108I9;0.0612312!11843-124H7;0.93645!11841-124H5;0.624203!10693-109F9;0.366832!10436-106E4;0.328665!10483-107A6;0.0046912!10282-104F3;0.121438!10023-101D5;0.491997!10066-101I3;0.12371!10065-101I2;0.581509!10800-110I8;0.522647!10610-108F7;0.756913!10841-111E4;0.0638669!10541-107H1;0.0671522!10842-111E5;0.588095!10562-108A4;0.419919!10024-101D6;0.887525!10064-101I1;0.00647654!10609-108F6;0.142893!10048-101G3;0.0723011!10781-110G7;0.00307128!10181-103D1;0.980746!10159-103A6;0.0635165!10056-101H2;0.0110293!10737-110B8;0.163587!10025-101D7;0.860142!10044-101F8;0.115069!10424-106D1;0.111364!10463-106H4;0.056262!10616-108G4;0.0998065!10486-107A9;0.137703!10062-101H8;0.0163182!10202-103F4;0.110145!10158-103A5;0.146187!10441-106E9;0.0206902!10031-101E4;0.623727!10063-101H9;0.0525549!10063-101H9;0.209405!11763-123H8;0.189383!11765-123I1;0.714503!11768-123I4;0.26193!10807-111A6;0.818643!10790-110H7;0.988917!10798-110I6;0.314182!10786-110H3;0.896646!10591-108D6;0.445355!10593-108D8;0.927331!10590-108D5;0.16225!10026-101D8;0.372215!10096-102C6;0.166887!10168-103B6;0.195822!10154-103A1;0.0438745!10209-103G2;0.0329364!10061-101H7;0.436652!10027-101D9;0.377872!10043-101F7;0.846791!10783-110G9;0.585491!10028-101E1;0.713275!10060-101H6;0.0118727!10203-103F5;0.014711!10059-101H5;0.504879!10047-101G2;0.747146!10029-101E2;0.740361!10058-101H4;0.0577483!10418-106C4;0.295183!10492-107B6;0.0972048!10694-109G1;0.0429585!10797-110I5;0.613429!10057-101H3;0.838493!10100-102D1;0.271902!10055-101H1;0.109177!10204-103F6;0.415221!10191-103E2;0.0281579!10563-108A5;0.120551
|name=GGGGGAAAGAAA,motif661,CNhs10628,T:1329.0(38.31%),B:19631.5(29.28%),P:1e-29
|name=GGGGGAAAGAAA,motif661,CNhs10628,T:1329.0(38.31%),B:19631.5(29.28%),P:1e-29
|tomtom_result=MZF1_1-4#MA0056.1;0;0.00173185;0.824361;1;6;GGGGGAAAGAAA;TGGGGA;+!AZF1#MA0277.1;-3;0.00596475;2.83922;1;9;GGGGGAAAGAAA;AAAAAGAAA;+!Trl#MA0205.1;-2;0.00735989;3.50331;1;10;GGGGGAAAGAAA;GAGAGAGCAA;-!MSN2#MA0341.1;0;0.00758282;3.60942;1;5;GGGGGAAAGAAA;AGGGG;+!USV1#MA0413.1;10;0.0076042;3.6196;1;10;GGGGGAAAGAAA;CACAAATTCAGGGGGAATTT;-!MZF1_5-13#MA0057.1;3;0.0108033;5.14239;1;7;GGGGGAAAGAAA;GGAGGGGGAA;+!STAT1#MA0137.1;-1;0.0117139;5.5758;1;11;GGGGGAAAGAAA;GGAAAACGAAACTG;+!Su(H)#MA0085.1;2;0.0122968;5.85326;1;12;GGGGGAAAGAAA;CTGTGGGAAACGAGAT;+!YRR1#MA0439.1;-1;0.0133753;6.36663;1;11;GGGGGAAAGAAA;GCGGAGATAAG;-!CHA4#MA0283.1;0;0.0146974;6.99594;1;8;GGGGGAAAGAAA;GGCGGAGA;+!GAL4#MA0299.1;1;0.0181618;8.64502;1;12;GGGGGAAAGAAA;CGGGGAACAGTACTC;+!PPARG::RXRA#MA0065.2;2;0.0186718;8.88777;1;12;GGGGGAAAGAAA;GTAGGGCAAAGGTCA;+
}}
}}

Latest revision as of 13:19, 7 September 2012

Full Name: GGGGGAAAGAAA,motif661,CNhs10628,T:1329.0(38.31%),B:19631.5(29.28%),P:1e-29

Motif matrix
POACGT
181.06966.451129.6551.831
290.37243.8571133.63761.134
393.0339.871033.962162.138
4112.96525.2511129.6561.134
545.186132.91134.96615.948
61169.5245.18687.71426.58
71045.923119.61103.66259.805
81275.841.32950.5021.329
9172.7770.437986.11899.675
101204.07430.56754.48939.87
111002.06675.753123.597127.584
121047.25273.095107.649101.004

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MZF1_1-4#MA0056.100.001731850.82436116GGGGGAAAGAAATGGGGA+
AZF1#MA0277.1-30.005964752.8392219GGGGGAAAGAAAAAAAAGAAA+
Trl#MA0205.1-20.007359893.50331110GGGGGAAAGAAAGAGAGAGCAA-
MSN2#MA0341.100.007582823.6094215GGGGGAAAGAAAAGGGG+
USV1#MA0413.1100.00760423.6196110GGGGGAAAGAAACACAAATTCAGGGGGAATTT-
MZF1_5-13#MA0057.130.01080335.1423917GGGGGAAAGAAAGGAGGGGGAA+
STAT1#MA0137.1-10.01171395.5758111GGGGGAAAGAAAGGAAAACGAAACTG+
Su(H)#MA0085.120.01229685.85326112GGGGGAAAGAAACTGTGGGAAACGAGAT+
YRR1#MA0439.1-10.01337536.36663111GGGGGAAAGAAAGCGGAGATAAG-
CHA4#MA0283.100.01469746.9959418GGGGGAAAGAAAGGCGGAGA+
GAL4#MA0299.110.01816188.64502112GGGGGAAAGAAACGGGGAACAGTACTC+
PPARG::RXRA#MA0065.220.01867188.88777112GGGGGAAAGAAAGTAGGGCAAAGGTCA+
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