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MacroAPE 1083:16-GCTTYCTS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.423;1.423;1418.731;1.423!2;1.423;1289.238;130.916;1.423!3;1.423;1.423;1.423;1418.731!4;78.265;180.721;256.14;907.874!5;1.423;685.886;12.80...")
 
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H6;0.338286!11837-124H1;0.283183!10568-108B1;0.122977!13230-141I8;0.990381!13231-141I9;0.533683!10696-109G3;0.574413!10493-107B7;0.319928!10494-107B8;0.0476932!10850-111F4;0.291175!10851-111F5;0.136827!10852-111F6;0.397376!10853-111F7;0.609888!10854-111F8;0.12948!10855-111F9;0.528164!10856-111G1;0.954684!10847-111F1;0.142369!10846-111E9;0.455096!10848-111F2;0.310019!10845-111E8;0.655346!10857-111G2;0.158755!10858-111G3;0.033181!10156-103A3;0.304685!11901-125F2;0.1062!11902-125F3;0.530968!11903-125F4;0.700429!10689-109F5;0.527766!10648-109A9;0.0934775!10784-110H1;0.195029!10744-110C6;0.224575!10772-110F7;0.600001!10474-106I6;0.337067!10600-108E6;0.44278!10684-109E9;0.181969!12226-129F3;0.914885!12227-129F4;0.0482059!10508-107D4;0.048572!10539-107G8;0.705653!10607-108F4;0.629848!10555-107I6;0.0447486!10774-110F9;0.399711!10637-108I7;0.0472502!10663-109C6;0.224082!10728-110A8;0.0397723!10729-110A9;0.157728!10430-106D7;0.348577!10730-110B1;0.344664!10813-111B3;0.0826009!10812-111B2;0.992366!10037-101F1;0.839769!10172-103C1;0.11665!10163-103B1;0.125905!10076-102A4;0.109836!10073-102A1;0.143454!10036-101E9;0.306144!10195-103E6;0.142633!10277-104E7;0.13671!10434-106E2;0.274245!10550-107I1;0.0297976!10545-107H5;0.226737!10544-107H4;0.127091!10704-109H2;0.343618!10510-107D6;0.513828!10558-107I9;0.639873!10020-101D2;0.0273874!10732-110B3;0.467227!10049-101G4;0.250116!10698-109G5;0.546931!10437-106E5;0.0918787!10417-106C3;0.289403!10035-101E8;0.0860255!10171-103B9;0.114799!10157-103A4;0.130468!10034-101E7;0.106997!10072-101I9;0.123223!10199-103F1;0.219112!10200-103F2;0.688422!10697-109G4;0.346697!10723-110A3;0.0855914!10179-103C8;0.211571!10160-103A7;0.171573!10180-103C9;0.240141!10162-103A9;0.0558579!10021-101D3;0.0743209!10840-111E3;0.22097!10706-109H4;0.794087!10033-101E6;0.342873!10032-101E5;0.11218!10490-107B4;0.137527!10439-106E7;0.0463293!10022-101D4;0.198824!10176-103C5;0.226739!10469-106I1;0.130439!10067-101I4;0.167286!10411-106B6;0.205546!10471-106I3;0.0833142!10030-101E3;0.0951262!10475-106I7;0.248556!10787-110H4;0.228605!10477-106I9;0.0658762!10695-109G2;0.295788!11771-123I7;0.444035!11772-123I8;0.024011!11773-123I9;0.0429411!10093-102C3;0.416344!10442-106F1;0.506375!10442-106F1;0.389335!10201-103F3;0.514062!10639-108I9;0.436229!11843-124H7;0.135978!11841-124H5;0.0330858!10693-109F9;0.115192!10436-106E4;0.00694435!10483-107A6;0.122541!10282-104F3;0.11958!10023-101D5;0.995234!10066-101I3;0.570407!10065-101I2;0.588978!10800-110I8;0.464701!10610-108F7;0.353753!10841-111E4;0.0603591!10541-107H1;0.0251123!10842-111E5;0.437385!10562-108A4;0.328437!10024-101D6;0.0399389!10064-101I1;0.19838!10609-108F6;0.402179!10048-101G3;0.339237!10781-110G7;0.211151!10181-103D1;0.443122!10159-103A6;0.150303!10056-101H2;0.100733!10737-110B8;0.209524!10025-101D7;0.119859!10044-101F8;0.0735021!10424-106D1;0.115621!10463-106H4;0.661773!10616-108G4;0.0395642!10486-107A9;0.282601!10062-101H8;0.123057!10202-103F4;0.223543!10158-103A5;0.465296!10441-106E9;0.154058!10031-101E4;0.146018!10063-101H9;0.135572!10063-101H9;0.273192!11763-123H8;0.218223!11765-123I1;0.707175!11768-123I4;0.881992!10807-111A6;0.474584!10790-110H7;0.0425333!10798-110I6;0.101223!10786-110H3;0.120736!10591-108D6;0.0309916!10593-108D8;0.0233477!10590-108D5;0.0588341!10026-101D8;0.0657858!10096-102C6;0.563131!10168-103B6;0.0342332!10154-103A1;0.142361!10209-103G2;0.119991!10061-101H7;0.421432!10027-101D9;0.347764!10043-101F7;0.423484!10783-110G9;0.109952!10028-101E1;0.464222!10060-101H6;0.390913!10203-103F5;0.384412!10059-101H5;0.430785!10047-101G2;0.511609!10029-101E2;0.133038!10058-101H4;0.325286!10418-106C4;0.44061!10492-107B6;0.389603!10694-109G1;0.23719!10797-110I5;0.393035!10057-101H3;0.0528841!10100-102D1;0.463085!10055-101H1;0.139629!10204-103F6;0.325857!10191-103E2;0.175623!10563-108A5;0.11262
|name=16-GCTTYCTS,CNhs11956,BestGuess:ETV4_f1_HM09(0.734276630539657),T:1423.0(31.57%),B:10127.8(23.60%),P:1e-33
|name=16-GCTTYCTS,CNhs11956,BestGuess:ETV4_f1_HM09(0.734276630539657),T:1423.0(31.57%),B:10127.8(23.60%),P:1e-33
|tomtom_result=GCR2#MA0305.1;0;0.000106287;0.0505926;0.10116;7;GCTTTCTC;GCTTCCT;+!SPI1#MA0080.2;0;0.00202852;0.965574;0.610661;7;GCTTTCTC;ACTTCCT;-!MNB1A#MA0053.1;0;0.00205061;0.97609;0.610661;5;GCTTTCTC;GCTTT;-!GCR1#MA0304.1;1;0.00256645;1.22163;0.610661;7;GCTTTCTC;GGCTTCCA;-!PBF#MA0064.1;0;0.00358742;1.70761;0.682872;5;GCTTTCTC;GCTTT;-!SPI1#MA0080.2;-1;0.00504495;2.4014;0.800262;6;GCTTTCTC;CTTCCG;-!Trl#MA0205.1;2;0.00605833;2.88376;0.823723;8;GCTTTCTC;TTGCTCTCTC;+!Dof2#MA0020.1;1;0.00775811;3.69286;0.922981;5;GCTTTCTC;TGCTTT;-!IXR1#MA0323.1;4;0.00926071;4.4081;0.979329;8;GCTTTCTC;CCCCGCTTCCGGCTT;-!Stat3#MA0144.1;-1;0.012238;5.82531;0.999747;7;GCTTTCTC;CTTCCTGGAA;-!Klf4#MA0039.1;0;0.0129357;6.1574;0.999747;8;GCTTTCTC;CCTTCCTTTA;-!NFKB1#MA0105.1;3;0.0177598;8.45365;0.999747;8;GCTTTCTC;GGGGATTCCCC;+!Dof3#MA0021.1;1;0.0201004;9.56777;0.999747;5;GCTTTCTC;CGCTTT;-
}}
}}

Latest revision as of 13:28, 7 September 2012

Full Name: 16-GCTTYCTS,CNhs11956,BestGuess:ETV4_f1_HM09(0.734276630539657),T:1423.0(31.57%),B:10127.8(23.60%),P:1e-33

Motif matrix
POACGT
11.4231.4231418.7311.423
21.4231289.238130.9161.423
31.4231.4231.4231418.731
478.265180.721256.14907.874
51.423685.88612.807722.884
61.4231179.667240.4871.423
71.423468.1671.423951.987
81.423776.958600.50644.113

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCR2#MA0305.100.0001062870.05059260.101167GCTTTCTCGCTTCCT+
SPI1#MA0080.200.002028520.9655740.6106617GCTTTCTCACTTCCT-
MNB1A#MA0053.100.002050610.976090.6106615GCTTTCTCGCTTT-
GCR1#MA0304.110.002566451.221630.6106617GCTTTCTCGGCTTCCA-
PBF#MA0064.100.003587421.707610.6828725GCTTTCTCGCTTT-
SPI1#MA0080.2-10.005044952.40140.8002626GCTTTCTCCTTCCG-
Trl#MA0205.120.006058332.883760.8237238GCTTTCTCTTGCTCTCTC+
Dof2#MA0020.110.007758113.692860.9229815GCTTTCTCTGCTTT-
IXR1#MA0323.140.009260714.40810.9793298GCTTTCTCCCCCGCTTCCGGCTT-
Stat3#MA0144.1-10.0122385.825310.9997477GCTTTCTCCTTCCTGGAA-
Klf4#MA0039.100.01293576.15740.9997478GCTTTCTCCCTTCCTTTA-
NFKB1#MA0105.130.01775988.453650.9997478GCTTTCTCGGGGATTCCCC+
Dof3#MA0021.110.02010049.567770.9997475GCTTTCTCCGCTTT-
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