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MacroAPE 1083:GTGACTSGG,motif114: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;124.2;330.372;571.32;216.108!2;336.582;158.976;27.324;719.118!3;158.976;325.404;755.136;2.484!4;659.502;1.242;285.66;295.596!5;182.574;788.6...")
 
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6;0.0055414!10455-106G5;0.339929!10534-107G3;0.0279795!10429-106D6;0.0340911!10464-106H5;0.0247446!10827-111C8;0.0162491!10789-110H6;0.0523655!10828-111C9;0.0514245!10788-110H5;0.0905215!10792-110H9;0.0167665!10765-110E9;0.0860109!10829-111D1;0.122078!10830-111D2;0.03005!10831-111D3;0.112364!10832-111D4;0.096394!10833-111D5;0.246624!10764-110E8;0.100329!10770-110F5;0.0406448!10399-106A3;0.0282028!10400-106A4;0.0779462!10405-106A9;0.106777!10834-111D6;0.148792!10835-111D7;0.074269!10836-111D8;0.055215!10837-111D9;0.0264459!10699-109G6;0.0495722!10802-111A1;0.0559728!10796-110I4;0.0094021!10010-101C1;0.131047!10810-111A9;0.00144231!10421-106C7;0.00017133!10708-109H6;0.0315617!12235-129G3;0.0398125!12236-129G4;0.0803608!12237-129G5;0.227505!10167-103B5;0.353225!10151-102I7;0.194526!10428-106D5;0.170891!10795-110I3;0.00868545!10805-111A4;0.0952131!10052-101G7;0.0127344!10189-103D9;0.018256!10589-108D4;0.0274523!10425-106D2;0.00667539!10427-106D4;0.408866!10702-109G9;0.120128!10432-106D9;0.177777!10496-107C1;0.3046!10718-109I7;0.75141!10011-101C2;0.0854086!10053-101G8;0.0232794!10686-109F2;0.93063!10084-102B3;0.242761!10012-101C3;0.187365!10085-102B4;0.145403!10482-107A5;0.226333!10419-106C5;0.102674!10080-102A8;0.0472333!10760-110E4;0.0875557!10709-109H7;0.0120828!10710-109H8;0.0140079!10703-109H1;0.159582!10719-109I8;0.00199058!10642-109A3;0.492305!10177-103C6;0.116036!10164-103B2;0.189726!10173-103C2;0.203638!10166-103B4;0.501988!10083-102B2;0.35891!10188-103D8;0.515066!10552-107I3;0.191805!10553-107I4;0.113279!10013-101C4;0.760429!10536-107G5;0.00529914!10618-108G6;0.730539!10423-106C9;0.0438569!10785-110H2;0.0388038!12238-129G6;0.101259!12239-129G7;0.0140241!12240-129G8;0.458002!10416-106C2;0.0454437!10801-110I9;0.00254816!10766-110F1;0.219768!10824-111C5;0.129367!10825-111C6;0.00651378!10826-111C7;0.00315082!10454-106G4;0.0114722!10409-106B4;0.00446369!10638-108I8;0.0628813!10636-108I6;0.000147305!10513-107D9;0.0497407!10420-106C6;0.00227071!10082-102B1;0.0567112!10014-101C5;0.38138!10070-101I7;0.0888667!10452-106G2;0.00976754!10453-106G3;0.128059!10449-106F8;0.0041562!10042-101F6;0.00337818!10069-101I6;0.152832!10193-103E4;0.00937179!10631-108I1;0.190153!10438-106E6;0.0282702!10488-107B2;0.0700673!10196-103E7;0.00173302!10071-101I8;0.450783!10071-101I8;0.00178819!10041-101F5;0.172518!10451-106G1;0.0096721!10450-106F9;0.00185939!10604-108F1;0.000146975!10605-108F2;0.113219!10606-108F3;0.150818!10603-108E9;0.218907!10497-107C2;0.159391!10448-106F7;0.143552!10643-109A4;0.106704!10426-106D3;0.0028063!10431-106D8;0.458621!10197-103E8;0.209103!10443-106F2;0.213217!10815-111B5;0.769454!10816-111B6;0.352338!10817-111B7;0.456408!10015-101C6;0.279996!10410-106B5;0.0824908!10054-101G9;0.0623381!10758-110E2;0.0663715!10711-109H9;0.465502!10040-101F4;0.166235!10470-106I2;0.181126!10415-106C1;0.253939!10198-103E9;0.168915!10614-108G2;0.0908795!10612-108F9;0.371054!10549-107H9;0.189733!10615-108G3;0.00372251!10487-107B1;0.115401!10433-106E1;0.0852681!10688-109F4;0.418197!10444-106F3;0.350864!10444-106F3;0.0746828!10485-107A8;0.0383698!10413-106B8;0.0362931!10175-103C4;0.00898914!10161-103A8;0.197905!12131-128D7;0.137749!10624-108H3;0.241417!10712-109I1;0.58937!10205-103F7;0.0372464!10206-103F8;0.0572718!10207-103F9;0.170818!10050-101G5;0.0309158!10051-101G6;0.340519!10016-101C7;0.207697!10046-101G1;0.314247!10778-110G4;0.0739111!10633-108I3;0.308741!10818-111B8;0.0336314!10819-111B9;0.0344271!10820-111C1;0.0256864!10484-107A7;0.0426999!10808-111A7;0.184424!10169-103B7;0.0153077!10153-102I9;0.312598!13425-144D5;0.164601!13433-144E4;8.38852e-06!13437-144E8;4.97399e-06!11904-125F5;1.60464e-05!11905-125F6;0.104464!10039-101F3;0.0605183!10791-110H8;0.190267!10017-101C8;0.202836!10045-101F9;0.867247!10509-107D5;0.22829!10839-111E2;0.597345!10692-109F8;0.277709!10079-102A7;0.524451!10078-102A6;0.174746!10721-110A1;0.282767!10569-108B2;0.000122191!10570-108B3;0.371744!10571-108B4;0.528401!10647-109A8;0.234729!10752-110D5;0.0355975!10782-110G8;0.036536!10726-110A6;0.670219!10018-101C9;0.142368!10086-102B5;0.240918!10182-103D2;0.830337!10165-103B3;0.179459!10499-107C4;0.235648!10408-106B3;0.0318494!10019-101D1;0.0469141!10068-101I5;0.0221311!10075-102A3;0.0022895!10077-102A5;0.0224111!10727-110A7;0.0878895!10775-110G1;0.0417494!10412-106B7;0.00989334!12231-129F8;0.500157!12232-129F9;0.0119666!12233-129G1;0.00268817!12234-129G2;0.000648778!10414-106B9;0.00153592!10170-103B8;0.0272874!10183-103D3;0.217791!10150-102I6;0.178244!10174-103C3;0.161155!10155-103A2;0.184257!10038-101F2;0.20047!10838-111E1;0.152666!10759-110E3;0.335215!10514-107E1;0.0739676!10465-106H6;0.349608!10691-109F7;0.142419!10843-111E6;0.987606!10844-111E7;0.00093527!11747-123G1;0.122607!11748-123G2;0.706556!11749-123G3;0.128038!11750-123G4;0.0929039!11751-123G5;0.0526895!11840-124H4;0.429942!11752-123G6;0.130316!11753-123G7;0.195713!11754-123G8;0.0125633!11755-123G9;0.292327!11756-123H1;0.965688!11833-124G6;0.156598!11760-123H5;0.0079397!11836-124G9;0.241788!11758-123H3;0.0401661!11835-124G8;0.151373!11762-123H7;0.0363144!11838-124H2;0.174805!11757-123H2;0.451472!11759-123H4;0.370111!11761-123H6;0.0409362!11842-124H6;0.0972426!11837-124H1;0.0231186!10568-108B1;0.0557789!13230-141I8;0.907777!13231-141I9;0.0401994!10696-109G3;0.180666!10493-107B7;0.00749147!10494-107B8;0.00979403!10850-111F4;0.156478!10851-111F5;0.0162397!10852-111F6;0.123943!10853-111F7;0.0686603!10854-111F8;0.153268!10855-111F9;0.826041!10856-111G1;0.320161!10847-111F1;0.00524613!10846-111E9;0.207135!10848-111F2;0.0765613!10845-111E8;0.0690043!10857-111G2;0.000580115!10858-111G3;0.0404187!10156-103A3;0.020259!11901-125F2;0.14196!11902-125F3;0.561413!11903-125F4;0.825688!10689-109F5;0.620263!10648-109A9;0.0277933!10784-110H1;0.070538!10744-110C6;0.146936!10772-110F7;0.00496173!10474-106I6;0.0414173!10600-108E6;0.0383672!10684-109E9;0.0633768!12226-129F3;0.85992!12227-129F4;0.562004!10508-107D4;0.0171672!10539-107G8;0.237808!10607-108F4;0.105587!10555-107I6;0.0228824!10774-110F9;0.130904!10637-108I7;0.0252446!10663-109C6;0.705158!10728-110A8;0.460988!10729-110A9;0.962694!10430-106D7;0.640295!10730-110B1;0.142691!10813-111B3;0.0356976!10812-111B2;0.0806729!10037-101F1;0.718983!10172-103C1;0.14858!10163-103B1;0.152658!10076-102A4;0.12216!10073-102A1;0.15829!10036-101E9;0.220813!10195-103E6;0.175963!10277-104E7;0.17201!10434-106E2;0.542833!10550-107I1;0.0716586!10545-107H5;0.0299334!10544-107H4;0.161103!10704-109H2;0.576824!10510-107D6;0.410592!10558-107I9;0.458256!10020-101D2;0.708812!10732-110B3;0.0681946!10049-101G4;0.647544!10698-109G5;0.872992!10437-106E5;0.133738!10417-106C3;0.0300696!10035-101E8;0.580918!10171-103B9;0.186521!10157-103A4;0.198262!10034-101E7;0.138846!10072-101I9;0.175628!10199-103F1;0.189042!10200-103F2;0.602604!10697-109G4;0.0577778!10723-110A3;0.0876746!10179-103C8;0.130744!10160-103A7;0.240091!10180-103C9;0.350514!10162-103A9;0.825581!10021-101D3;0.499586!10840-111E3;0.0196227!10706-109H4;0.275831!10033-101E6;0.413446!10032-101E5;0.221786!10490-107B4;0.190527!10439-106E7;0.00736442!10022-101D4;0.0650367!10176-103C5;0.0441233!10469-106I1;0.231574!10067-101I4;0.498653!10411-106B6;0.015362!10471-106I3;0.0764295!10030-101E3;0.792929!10475-106I7;0.0826304!10787-110H4;0.0067466!10477-106I9;0.00449632!10695-109G2;0.163182!11771-123I7;0.529268!11772-123I8;0.907769!11773-123I9;0.354333!10093-102C3;0.438984!10442-106F1;0.636697!10442-106F1;0.461583!10201-103F3;0.557173!10639-108I9;0.140384!11843-124H7;0.426458!11841-124H5;0.761112!10693-109F9;0.0936395!10436-106E4;0.197252!10483-107A6;0.159442!10282-104F3;0.475647!10023-101D5;0.557069!10066-101I3;0.153382!10065-101I2;0.0459963!10800-110I8;0.0262179!10610-108F7;3.03275e-05!10841-111E4;0.0569729!10541-107H1;0.0130208!10842-111E5;0.0818785!10562-108A4;0.0026076!10024-101D6;0.0112109!10064-101I1;0.0704934!10609-108F6;0.0158586!10048-101G3;0.00284273!10781-110G7;0.0542769!10181-103D1;0.0838287!10159-103A6;0.16739!10056-101H2;0.137229!10737-110B8;0.0979999!10025-101D7;0.279732!10044-101F8;0.0700711!10424-106D1;0.0959156!10463-106H4;0.199453!10616-108G4;0.259923!10486-107A9;0.958422!10062-101H8;0.237837!10202-103F4;0.134127!10158-103A5;0.864355!10441-106E9;0.135477!10031-101E4;0.0290361!10063-101H9;0.188711!10063-101H9;0.175702!11763-123H8;0.00933654!11765-123I1;0.191123!11768-123I4;0.340738!10807-111A6;0.500981!10790-110H7;0.000120836!10798-110I6;1.08819e-05!10786-110H3;0.0292381!10591-108D6;0.00606115!10593-108D8;0.00133236!10590-108D5;0.32291!10026-101D8;0.002879!10096-102C6;0.928337!10168-103B6;0.0110671!10154-103A1;0.149968!10209-103G2;0.115978!10061-101H7;0.114258!10027-101D9;0.0625732!10043-101F7;0.289809!10783-110G9;0.85732!10028-101E1;0.529658!10060-101H6;0.63679!10203-103F5;0.0390971!10059-101H5;0.135764!10047-101G2;0.0553673!10029-101E2;0.326369!10058-101H4;0.0328323!10418-106C4;0.0590499!10492-107B6;0.29283!10694-109G1;0.182786!10797-110I5;0.892545!10057-101H3;0.607397!10100-102D1;0.0238375!10055-101H1;0.0187185!10204-103F6;0.0242213!10191-103E2;0.165475!10563-108A5;0.0255466
|name=GTGACTSGG,motif114,CNhs13475,T:1242.0(23.78%),B:12540.9(15.79%),P:1e-50
|name=GTGACTSGG,motif114,CNhs13475,T:1242.0(23.78%),B:12540.9(15.79%),P:1e-50
|tomtom_result=CRZ1#MA0285.1;0;0.000521977;0.248461;0.410635;9;GTGACTCGG;GTGGCTTAG;-!BAS1#MA0278.1;5;0.000862678;0.410635;0.410635;9;GTGACTCGG;TTGACTTGACTCTGGCTGTGC;-!NFE2L2#MA0150.1;0;0.00162451;0.773266;0.414165;9;GTGACTCGG;ATGACTCAGCA;+!ARG81#MA0272.1;0;0.00174019;0.828331;0.414165;8;GTGACTCGG;GTGACTCT;+!ESR1#MA0112.2;8;0.00610911;2.90794;0.995004;9;GTGACTCGG;AGGTCAGGGTGACCTGGGCC;-!ESR1#MA0112.2;9;0.00627103;2.98501;0.995004;9;GTGACTCGG;GGGGTCACGGTGACCTGG;-!AP1#MA0099.2;-1;0.00925527;4.40551;1;7;GTGACTCGG;TGACTCA;+!ESR2#MA0258.1;9;0.00979894;4.6643;1;9;GTGACTCGG;CAGGTCACCGTGACCTTG;-!Pax2#MA0067.1;2;0.0114711;5.46026;1;6;GTGACTCGG;GCGTGACT;-!Pax4#MA0068.1;5;0.018227;8.67603;1;9;GTGACTCGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ARG80#MA0271.1;-1;0.0186942;8.89843;1;6;GTGACTCGG;AGACGC;+!Fos#MA0099.1;0;0.0205877;9.79977;1;8;GTGACTCGG;GTGAGTCA;+
}}
}}

Latest revision as of 13:29, 7 September 2012

Full Name: GTGACTSGG,motif114,CNhs13475,T:1242.0(23.78%),B:12540.9(15.79%),P:1e-50

Motif matrix
POACGT
1124.2330.372571.32216.108
2336.582158.97627.324719.118
3158.976325.404755.1362.484
4659.5021.242285.66295.596
5182.574788.67264.5466.21
6243.43288.1821.242909.144
711.178516.672416.07298.08
8235.98119.232542.754344.034
98.694397.44818.47817.388

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CRZ1#MA0285.100.0005219770.2484610.4106359GTGACTCGGGTGGCTTAG-
BAS1#MA0278.150.0008626780.4106350.4106359GTGACTCGGTTGACTTGACTCTGGCTGTGC-
NFE2L2#MA0150.100.001624510.7732660.4141659GTGACTCGGATGACTCAGCA+
ARG81#MA0272.100.001740190.8283310.4141658GTGACTCGGGTGACTCT+
ESR1#MA0112.280.006109112.907940.9950049GTGACTCGGAGGTCAGGGTGACCTGGGCC-
ESR1#MA0112.290.006271032.985010.9950049GTGACTCGGGGGGTCACGGTGACCTGG-
AP1#MA0099.2-10.009255274.4055117GTGACTCGGTGACTCA+
ESR2#MA0258.190.009798944.664319GTGACTCGGCAGGTCACCGTGACCTTG-
Pax2#MA0067.120.01147115.4602616GTGACTCGGGCGTGACT-
Pax4#MA0068.150.0182278.6760319GTGACTCGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ARG80#MA0271.1-10.01869428.8984316GTGACTCGGAGACGC+
Fos#MA0099.100.02058779.7997718GTGACTCGGGTGAGTCA+
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