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MacroAPE 1083:GATTTTTWT,motif458: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.628;266.992;1357.752;1.628!2;1243.792;380.952;1.628;1.628!3;1.628;236.06;1.628;1388.684!4;208.384;240.944;1.628;1177.044!5;1.628;1.628;1.6...")
 
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9;0.722378!10788-110H5;0.859387!10792-110H9;0.937722!10765-110E9;0.970718!10829-111D1;0.335336!10830-111D2;0.994387!10831-111D3;0.21536!10832-111D4;0.502337!10833-111D5;0.33103!10764-110E8;0.66252!10770-110F5;0.538592!10399-106A3;0.639278!10400-106A4;0.16608!10405-106A9;0.281971!10834-111D6;0.149372!10835-111D7;0.933362!10836-111D8;0.945617!10837-111D9;0.967916!10699-109G6;0.973676!10802-111A1;0.643198!10796-110I4;0.876297!10010-101C1;0.368504!10810-111A9;0.205915!10421-106C7;0.877038!10708-109H6;0.747303!12235-129G3;0.449507!12236-129G4;0.942594!12237-129G5;0.468115!10167-103B5;0.410028!10151-102I7;0.0695993!10428-106D5;0.139333!10795-110I3;0.878057!10805-111A4;0.717339!10052-101G7;0.379748!10189-103D9;0.724326!10589-108D4;0.763079!10425-106D2;0.628524!10427-106D4;0.525038!10702-109G9;0.33845!10432-106D9;0.548047!10496-107C1;0.396716!10718-109I7;0.457283!10011-101C2;0.519927!10053-101G8;0.722981!10686-109F2;0.558989!10084-102B3;0.701316!10012-101C3;0.153661!10085-102B4;0.0770011!10482-107A5;0.0887058!10419-106C5;0.130725!10080-102A8;0.348667!10760-110E4;0.828168!10709-109H7;0.95279!10710-109H8;0.528024!10703-109H1;0.645694!10719-109I8;0.425031!10642-109A3;0.359458!10177-103C6;0.492176!10164-103B2;0.0577723!10173-103C2;0.136037!10166-103B4;0.404236!10083-102B2;0.370899!10188-103D8;0.28556!10552-107I3;0.0537391!10553-107I4;0.86548!10013-101C4;0.956512!10536-107G5;0.87916!10618-108G6;0.514013!10423-106C9;0.97673!10785-110H2;0.208047!12238-129G6;0.834445!12239-129G7;0.928518!12240-129G8;0.728562!10416-106C2;0.492905!10801-110I9;0.399867!10766-110F1;0.514682!10824-111C5;0.59163!10825-111C6;0.802209!10826-111C7;0.752832!10454-106G4;0.865179!10409-106B4;0.735107!10638-108I8;0.825403!10636-108I6;0.947109!10513-107D9;0.834142!10420-106C6;0.953401!10082-102B1;0.559699!10014-101C5;0.90345!10070-101I7;0.739552!10452-106G2;0.564631!10453-106G3;0.146144!10449-106F8;0.173159!10042-101F6;0.16797!10069-101I6;0.105881!10193-103E4;0.000526528!10631-108I1;0.0874058!10438-106E6;0.869101!10488-107B2;0.0745066!10196-103E7;0.271598!10071-101I8;0.888801!10071-101I8;0.436567!10041-101F5;0.0923264!10451-106G1;0.8453!10450-106F9;0.268815!10604-108F1;0.741628!10605-108F2;0.238411!10606-108F3;0.230216!10603-108E9;0.560118!10497-107C2;0.421424!10448-106F7;0.869582!10643-109A4;0.591007!10426-106D3;0.954037!10431-106D8;0.905889!10197-103E8;0.894897!10443-106F2;0.361298!10815-111B5;0.356118!10816-111B6;0.886922!10817-111B7;0.786455!10015-101C6;0.907559!10410-106B5;0.352501!10054-101G9;0.733525!10758-110E2;0.0979854!10711-109H9;0.782553!10040-101F4;0.833397!10470-106I2;0.182553!10415-106C1;0.77156!10198-103E9;0.912132!10614-108G2;0.701946!10612-108F9;0.252229!10549-107H9;0.298286!10615-108G3;0.888345!10487-107B1;0.249023!10433-106E1;0.727746!10688-109F4;0.134853!10444-106F3;0.924457!10444-106F3;0.9289!10485-107A8;0.927235!10413-106B8;0.996001!10175-103C4;0.00136379!10161-103A8;0.0872994!12131-128D7;0.184909!10624-108H3;0.539899!10712-109I1;0.276669!10205-103F7;0.945315!10206-103F8;0.163813!10207-103F9;0.1643!10050-101G5;0.750832!10051-101G6;0.129636!10016-101C7;0.0733416!10046-101G1;0.182711!10778-110G4;0.00177203!10633-108I3;0.931117!10818-111B8;0.956448!10819-111B9;0.445814!10820-111C1;0.535277!10484-107A7;0.566568!10808-111A7;0.870581!10169-103B7;0.562476!10153-102I9;0.052044!13425-144D5;0.115966!13433-144E4;0.914495!13437-144E8;0.994418!11904-125F5;0.921573!11905-125F6;0.332386!10039-101F3;0.323558!10791-110H8;0.109245!10017-101C8;0.35929!10045-101F9;0.838284!10509-107D5;0.656501!10839-111E2;0.903289!10692-109F8;0.549226!10079-102A7;0.298329!10078-102A6;0.0104744!10721-110A1;0.114377!10569-108B2;0.626306!10570-108B3;0.464584!10571-108B4;0.758812!10647-109A8;0.593793!10752-110D5;0.271104!10782-110G8;0.82393!10726-110A6;0.661274!10018-101C9;0.269691!10086-102B5;0.285063!10182-103D2;0.909445!10165-103B3;0.245472!10499-107C4;0.292895!10408-106B3;0.503767!10019-101D1;0.194261!10068-101I5;0.768717!10075-102A3;0.911162!10077-102A5;0.65391!10727-110A7;0.986544!10775-110G1;0.683089!10412-106B7;0.522443!12231-129F8;0.0900993!12232-129F9;0.524437!12233-129G1;0.99767!12234-129G2;0.551865!10414-106B9;0.693215!10170-103B8;0.468958!10183-103D3;0.104917!10150-102I6;0.121176!10174-103C3;0.113656!10155-103A2;0.179983!10038-101F2;0.157212!10838-111E1;0.172369!10759-110E3;0.52848!10514-107E1;0.790716!10465-106H6;0.973227!10691-109F7;0.0636738!10843-111E6;0.192203!10844-111E7;0.294481!11747-123G1;0.378146!11748-123G2;0.720604!11749-123G3;0.390734!11750-123G4;0.497595!11751-123G5;0.337779!11840-124H4;0.933357!11752-123G6;0.501813!11753-123G7;0.375919!11754-123G8;0.591123!11755-123G9;0.348044!11756-123H1;0.736147!11833-124G6;0.664558!11760-123H5;0.738273!11836-124G9;0.756388!11758-123H3;0.256034!11835-124G8;0.164867!11762-123H7;0.971028!11838-124H2;0.730332!11757-123H2;0.507962!11759-123H4;0.853817!11761-123H6;0.828498!11842-124H6;0.857093!11837-124H1;0.955891!10568-108B1;0.970747!13230-141I8;0.206351!13231-141I9;0.978045!10696-109G3;0.991035!10493-107B7;0.740896!10494-107B8;0.740873!10850-111F4;0.977967!10851-111F5;0.810493!10852-111F6;0.549544!10853-111F7;0.727735!10854-111F8;0.716588!10855-111F9;0.639575!10856-111G1;0.775572!10847-111F1;0.234599!10846-111E9;0.913914!10848-111F2;0.908364!10845-111E8;0.663029!10857-111G2;0.335434!10858-111G3;0.985228!10156-103A3;0.0857282!11901-125F2;0.0838598!11902-125F3;0.88957!11903-125F4;0.885205!10689-109F5;0.806233!10648-109A9;0.0765253!10784-110H1;0.502102!10744-110C6;0.326267!10772-110F7;0.689231!10474-106I6;0.305326!10600-108E6;0.839107!10684-109E9;0.967738!12226-129F3;0.973756!12227-129F4;0.519503!10508-107D4;0.207159!10539-107G8;0.976557!10607-108F4;0.92975!10555-107I6;0.951702!10774-110F9;0.651604!10637-108I7;0.747114!10663-109C6;0.388676!10728-110A8;0.309867!10729-110A9;0.930015!10430-106D7;0.955019!10730-110B1;0.471585!10813-111B3;0.906267!10812-111B2;0.536333!10037-101F1;0.774354!10172-103C1;0.0950423!10163-103B1;0.0848747!10076-102A4;0.102753!10073-102A1;0.0558562!10036-101E9;0.101952!10195-103E6;0.124099!10277-104E7;0.113733!10434-106E2;0.200877!10550-107I1;0.628308!10545-107H5;0.471064!10544-107H4;0.487242!10704-109H2;0.739628!10510-107D6;0.741904!10558-107I9;0.996564!10020-101D2;0.890486!10732-110B3;0.633741!10049-101G4;0.773078!10698-109G5;0.0863333!10437-106E5;0.460728!10417-106C3;0.839769!10035-101E8;0.397986!10171-103B9;0.118089!10157-103A4;0.0772605!10034-101E7;0.118007!10072-101I9;0.115376!10199-103F1;0.154355!10200-103F2;0.291674!10697-109G4;0.00484603!10723-110A3;0.548012!10179-103C8;0.776235!10160-103A7;0.214277!10180-103C9;0.256081!10162-103A9;0.275029!10021-101D3;0.954996!10840-111E3;0.882013!10706-109H4;0.810249!10033-101E6;0.348797!10032-101E5;0.344519!10490-107B4;0.115607!10439-106E7;0.428423!10022-101D4;0.521789!10176-103C5;0.84325!10469-106I1;0.174782!10067-101I4;0.41223!10411-106B6;0.654184!10471-106I3;0.158303!10030-101E3;0.514858!10475-106I7;0.454668!10787-110H4;0.840099!10477-106I9;0.337755!10695-109G2;0.671151!11771-123I7;0.6702!11772-123I8;0.224153!11773-123I9;0.114272!10093-102C3;0.56073!10442-106F1;0.155509!10442-106F1;0.811434!10201-103F3;0.943812!10639-108I9;0.841025!11843-124H7;0.421966!11841-124H5;0.548385!10693-109F9;0.933244!10436-106E4;0.504739!10483-107A6;0.447924!10282-104F3;0.24702!10023-101D5;0.00809302!10066-101I3;0.00146719!10065-101I2;0.0203314!10800-110I8;0.0127829!10610-108F7;0.745748!10841-111E4;0.591488!10541-107H1;0.606473!10842-111E5;0.404776!10562-108A4;0.567034!10024-101D6;0.946953!10064-101I1;0.636524!10609-108F6;0.156278!10048-101G3;0.986359!10781-110G7;0.482251!10181-103D1;0.710699!10159-103A6;0.117299!10056-101H2;0.231369!10737-110B8;0.197672!10025-101D7;0.766384!10044-101F8;0.647039!10424-106D1;0.922147!10463-106H4;0.827152!10616-108G4;0.682273!10486-107A9;0.320517!10062-101H8;0.371285!10202-103F4;0.343805!10158-103A5;0.341065!10441-106E9;0.316718!10031-101E4;0.679975!10063-101H9;0.0779294!10063-101H9;0.10382!11763-123H8;0.611252!11765-123I1;0.87603!11768-123I4;0.579038!10807-111A6;0.718949!10790-110H7;0.556873!10798-110I6;0.696919!10786-110H3;0.267563!10591-108D6;0.964464!10593-108D8;0.290873!10590-108D5;0.815378!10026-101D8;0.437082!10096-102C6;0.86241!10168-103B6;0.90938!10154-103A1;0.244185!10209-103G2;0.126913!10061-101H7;0.00731448!10027-101D9;0.0720706!10043-101F7;0.588665!10783-110G9;0.506195!10028-101E1;0.568056!10060-101H6;0.930171!10203-103F5;0.579492!10059-101H5;0.0216447!10047-101G2;0.0078842!10029-101E2;0.608515!10058-101H4;0.82079!10418-106C4;0.320677!10492-107B6;0.462228!10694-109G1;0.408369!10797-110I5;0.990591!10057-101H3;0.17375!10100-102D1;0.291147!10055-101H1;0.655267!10204-103F6;0.76822!10191-103E2;0.491904!10563-108A5;0.347701
|name=GATTTTTWT,motif458,CNhs13796,T:1628.0(35.42%),B:19282.6(27.33%),P:1e-32
|name=GATTTTTWT,motif458,CNhs13796,T:1628.0(35.42%),B:19282.6(27.33%),P:1e-32
|tomtom_result=hb#MA0049.1;-1;0.00434585;2.06862;1;8;GATTTTTTT;TTTTTTATGC;-!TBP#MA0108.2;4;0.00641098;3.05163;1;9;GATTTTTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;4;0.00641098;3.05163;1;9;GATTTTTTT;CCCCGCCTTTTATAC;-!SPT23#MA0388.1;2;0.00934084;4.44624;1;6;GATTTTTTT;TTGATTTC;-!tll#MA0459.1;3;0.013714;6.52784;1;7;GATTTTTTT;TTTGACTTTT;-!br_Z1#MA0010.1;0;0.0142544;6.78511;1;9;GATTTTTTT;GATTTGTCTATTAC;-!SFP1#MA0378.1;8;0.0176346;8.39409;1;9;GATTTTTTT;CCGTAGAAAATTTTTTTCAAT;-!FOXI1#MA0042.1;1;0.0209074;9.95192;1;9;GATTTTTTT;GGATGTTTGTTT;+
}}
}}

Latest revision as of 13:35, 7 September 2012

Full Name: GATTTTTWT,motif458,CNhs13796,T:1628.0(35.42%),B:19282.6(27.33%),P:1e-32

Motif matrix
POACGT
11.628266.9921357.7521.628
21243.792380.9521.6281.628
31.628236.061.6281388.684
4208.384240.9441.6281177.044
51.6281.6281.6281623.116
61.6281.628140.0081484.736
7153.0321.628397.2321076.108
8631.664252.341.628742.368
9146.521.6281.6281478.224

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hb#MA0049.1-10.004345852.0686218GATTTTTTTTTTTTTATGC-
TBP#MA0108.240.006410983.0516319GATTTTTTTCCCCGCCTTTTATAC-
TBP#MA0108.240.006410983.0516319GATTTTTTTCCCCGCCTTTTATAC-
SPT23#MA0388.120.009340844.4462416GATTTTTTTTTGATTTC-
tll#MA0459.130.0137146.5278417GATTTTTTTTTTGACTTTT-
br_Z1#MA0010.100.01425446.7851119GATTTTTTTGATTTGTCTATTAC-
SFP1#MA0378.180.01763468.3940919GATTTTTTTCCGTAGAAAATTTTTTTCAAT-
FOXI1#MA0042.110.02090749.9519219GATTTTTTTGGATGTTTGTTT+
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