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MacroAPE 1083:8-TAWAARGCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;285.244;199.179;250.818;1723.759!2;1517.203;93.442;290.162;558.193!3;1327.86;2.459;2.459;1126.222!4;1709.005;361.473;167.212;221.31!5;1583.5...")
 
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0.00948451!12182-129A4;0.00221284!12183-129A5;0.00780129!12184-129A6;0.00301075!10809-111A8;0.0152724!10597-108E3;0.0178127!10717-109I6;0.449573!10455-106G5;0.014413!10534-107G3;0.310485!10429-106D6;0.355058!10464-106H5;0.0755774!10827-111C8;0.688726!10789-110H6;0.168669!10828-111C9;0.0282402!10788-110H5;0.118468!10792-110H9;0.119173!10765-110E9;0.0169477!10829-111D1;0.0211334!10830-111D2;0.761808!10831-111D3;0.0309907!10832-111D4;0.149605!10833-111D5;0.166625!10764-110E8;0.251826!10770-110F5;0.637107!10399-106A3;0.239417!10400-106A4;0.0693622!10405-106A9;0.0763968!10834-111D6;0.0657873!10835-111D7;0.555444!10836-111D8;0.507479!10837-111D9;0.760852!10699-109G6;0.867992!10802-111A1;0.452398!10796-110I4;0.254723!10010-101C1;0.012588!10810-111A9;0.263138!10421-106C7;0.0632624!10708-109H6;0.293395!12235-129G3;0.0116736!12236-129G4;0.0168953!12237-129G5;0.660915!10167-103B5;0.411046!10151-102I7;0.875488!10428-106D5;0.820292!10795-110I3;0.349548!10805-111A4;0.0666371!10052-101G7;0.0104578!10189-103D9;0.351219!10589-108D4;0.355652!10425-106D2;0.772756!10427-106D4;0.85471!10702-109G9;0.433892!10432-106D9;0.0390435!10496-107C1;0.00325023!10718-109I7;0.0437908!10011-101C2;0.0214587!10053-101G8;0.880537!10686-109F2;0.154864!10084-102B3;0.412932!10012-101C3;0.926942!10085-102B4;0.478665!10482-107A5;0.402814!10419-106C5;0.296778!10080-102A8;0.0493144!10760-110E4;0.636276!10709-109H7;0.0163077!10710-109H8;0.0581202!10703-109H1;0.0955204!10719-109I8;0.838975!10642-109A3;0.0572289!10177-103C6;0.197684!10164-103B2;0.745295!10173-103C2;0.398831!10166-103B4;0.488776!10083-102B2;0.515304!10188-103D8;0.739498!10552-107I3;0.885307!10553-107I4;0.714605!10013-101C4;0.00368013!10536-107G5;0.452949!10618-108G6;0.975416!10423-106C9;0.0188466!10785-110H2;0.113389!12238-129G6;0.152661!12239-129G7;0.00245394!12240-129G8;0.302766!10416-106C2;0.0919034!10801-110I9;0.0577615!10766-110F1;0.0719975!10824-111C5;0.547057!10825-111C6;0.231666!10826-111C7;0.209109!10454-106G4;0.144344!10409-106B4;0.649332!10638-108I8;0.864638!10636-108I6;0.285632!10513-107D9;0.119274!10420-106C6;0.250064!10082-102B1;0.892629!10014-101C5;0.834233!10070-101I7;0.919036!10452-106G2;0.888692!10453-106G3;0.100142!10449-106F8;0.367926!10042-101F6;0.358741!10069-101I6;0.349547!10193-103E4;0.0621372!10631-108I1;0.372682!10438-106E6;0.264647!10488-107B2;0.0540313!10196-103E7;0.147737!10071-101I8;0.750754!10071-101I8;0.616282!10041-101F5;0.692797!10451-106G1;0.392204!10450-106F9;0.0214786!10604-108F1;0.074956!10605-108F2;0.00679863!10606-108F3;0.0149427!10603-108E9;0.00118553!10497-107C2;0.00374889!10448-106F7;0.0613293!10643-109A4;0.334493!10426-106D3;0.0919866!10431-106D8;0.00325074!10197-103E8;0.0187553!10443-106F2;0.11905!10815-111B5;0.67595!10816-111B6;0.0289222!10817-111B7;0.00618658!10015-101C6;0.0301341!10410-106B5;0.70656!10054-101G9;0.0752296!10758-110E2;0.78986!10711-109H9;0.129173!10040-101F4;0.966165!10470-106I2;0.325998!10415-106C1;0.008484!10198-103E9;0.503972!10614-108G2;0.757543!10612-108F9;0.801609!10549-107H9;0.0621858!10615-108G3;0.0260866!10487-107B1;0.0435788!10433-106E1;0.455432!10688-109F4;0.105402!10444-106F3;0.00590459!10444-106F3;0.847907!10485-107A8;0.807373!10413-106B8;0.972833!10175-103C4;0.344297!10161-103A8;0.536701!12131-128D7;0.56222!10624-108H3;0.256162!10712-109I1;0.229802!10205-103F7;0.481709!10206-103F8;0.095859!10207-103F9;0.0325803!10050-101G5;0.619676!10051-101G6;0.340677!10016-101C7;0.0568812!10046-101G1;0.118435!10778-110G4;0.218485!10633-108I3;0.30392!10818-111B8;0.00170214!10819-111B9;0.194064!10820-111C1;0.242303!10484-107A7;0.236652!10808-111A7;0.00880015!10169-103B7;0.649922!10153-102I9;0.902798!13425-144D5;0.704691!13433-144E4;0.0536257!13437-144E8;0.0314882!11904-125F5;0.0204415!11905-125F6;0.042421!10039-101F3;0.00264201!10791-110H8;0.510621!10017-101C8;0.28238!10045-101F9;0.733728!10509-107D5;0.318177!10839-111E2;0.470951!10692-109F8;0.228855!10079-102A7;0.00426399!10078-102A6;0.00948822!10721-110A1;0.065328!10569-108B2;0.0408114!10570-108B3;0.425434!10571-108B4;0.0388346!10647-109A8;0.524588!10752-110D5;0.0420529!10782-110G8;0.212615!10726-110A6;0.0485931!10018-101C9;0.161061!10086-102B5;0.126612!10182-103D2;0.0206613!10165-103B3;0.887465!10499-107C4;0.634315!10408-106B3;0.403788!10019-101D1;0.0667018!10068-101I5;0.540427!10075-102A3;0.516183!10077-102A5;0.410721!10727-110A7;0.195155!10775-110G1;0.262534!10412-106B7;0.0684434!12231-129F8;0.0671979!12232-129F9;0.168366!12233-129G1;0.678968!12234-129G2;0.677897!10414-106B9;0.85915!10170-103B8;0.0325941!10183-103D3;0.769082!10150-102I6;0.642013!10174-103C3;0.514898!10155-103A2;0.433131!10038-101F2;0.533608!10838-111E1;0.485491!10759-110E3;0.00526824!10514-107E1;0.73425!10465-106H6;0.0229898!10691-109F7;0.3835!10843-111E6;0.0188699!10844-111E7;0.369089!11747-123G1;0.0516033!11748-123G2;0.482089!11749-123G3;0.426737!11750-123G4;0.581709!11751-123G5;0.364512!11840-124H4;0.125757!11752-123G6;0.387951!11753-123G7;0.457987!11754-123G8;0.927378!11755-123G9;0.907574!11756-123H1;0.694072!11833-124G6;0.723177!11760-123H5;0.217958!11836-124G9;0.81325!11758-123H3;0.746138!11835-124G8;0.465452!11762-123H7;0.650991!11838-124H2;0.2393!11757-123H2;0.429754!11759-123H4;0.4387!11761-123H6;0.508686!11842-124H6;0.847514!11837-124H1;0.585133!10568-108B1;0.367712!13230-141I8;0.152495!13231-141I9;0.174472!10696-109G3;0.217534!10493-107B7;0.612037!10494-107B8;0.302348!10850-111F4;0.119766!10851-111F5;0.0135351!10852-111F6;0.257211!10853-111F7;0.108251!10854-111F8;0.089399!10855-111F9;0.107486!10856-111G1;0.672664!10847-111F1;0.652653!10846-111E9;0.0903279!10848-111F2;0.00843063!10845-111E8;0.923501!10857-111G2;0.413119!10858-111G3;0.159936!10156-103A3;0.0695261!11901-125F2;0.546021!11902-125F3;0.274065!11903-125F4;0.336946!10689-109F5;0.157542!10648-109A9;0.894252!10784-110H1;0.0408195!10744-110C6;0.000179482!10772-110F7;0.804668!10474-106I6;0.143034!10600-108E6;0.00190415!10684-109E9;0.00678111!12226-129F3;0.269882!12227-129F4;0.0109603!10508-107D4;0.012392!10539-107G8;0.978894!10607-108F4;0.182553!10555-107I6;0.221708!10774-110F9;0.497012!10637-108I7;0.57802!10663-109C6;0.274!10728-110A8;0.0551274!10729-110A9;0.129479!10430-106D7;0.438213!10730-110B1;0.616924!10813-111B3;0.712003!10812-111B2;0.471237!10037-101F1;0.521156!10172-103C1;0.385138!10163-103B1;0.638656!10076-102A4;0.580397!10073-102A1;0.568851!10036-101E9;0.820739!10195-103E6;0.63361!10277-104E7;0.405848!10434-106E2;0.780006!10550-107I1;0.142349!10545-107H5;0.0233932!10544-107H4;0.0589724!10704-109H2;0.000360831!10510-107D6;0.0401968!10558-107I9;0.000714668!10020-101D2;0.806748!10732-110B3;0.467908!10049-101G4;0.69966!10698-109G5;0.254215!10437-106E5;0.110144!10417-106C3;0.62009!10035-101E8;0.00208454!10171-103B9;0.476983!10157-103A4;0.740527!10034-101E7;0.520191!10072-101I9;0.449772!10199-103F1;0.906555!10200-103F2;0.10737!10697-109G4;0.186803!10723-110A3;0.116544!10179-103C8;0.0580735!10160-103A7;0.694909!10180-103C9;0.127369!10162-103A9;0.463726!10021-101D3;0.323335!10840-111E3;0.128136!10706-109H4;0.620844!10033-101E6;0.0905186!10032-101E5;0.338316!10490-107B4;0.545235!10439-106E7;0.0535809!10022-101D4;0.0666642!10176-103C5;0.232128!10469-106I1;0.374971!10067-101I4;0.000117403!10411-106B6;0.885202!10471-106I3;0.80061!10030-101E3;0.38207!10475-106I7;0.645158!10787-110H4;0.372785!10477-106I9;1.29753e-05!10695-109G2;0.00749667!11771-123I7;0.963623!11772-123I8;0.534851!11773-123I9;0.690607!10093-102C3;0.0158063!10442-106F1;0.0344971!10442-106F1;0.199424!10201-103F3;0.181475!10639-108I9;0.967797!11843-124H7;0.0109343!11841-124H5;0.306539!10693-109F9;0.984403!10436-106E4;0.000577874!10483-107A6;0.002124!10282-104F3;0.00922382!10023-101D5;0.205348!10066-101I3;0.204648!10065-101I2;0.0626637!10800-110I8;0.455996!10610-108F7;0.00502819!10841-111E4;0.245313!10541-107H1;0.050512!10842-111E5;0.172382!10562-108A4;0.513865!10024-101D6;0.00477413!10064-101I1;0.767608!10609-108F6;0.314436!10048-101G3;0.111401!10781-110G7;0.13488!10181-103D1;0.130242!10159-103A6;0.765018!10056-101H2;0.474881!10737-110B8;0.99307!10025-101D7;0.18993!10044-101F8;0.641259!10424-106D1;0.552166!10463-106H4;0.252927!10616-108G4;0.13126!10486-107A9;0.0381772!10062-101H8;0.347514!10202-103F4;0.238462!10158-103A5;0.0191564!10441-106E9;0.401422!10031-101E4;0.0474966!10063-101H9;0.716876!10063-101H9;0.675883!11763-123H8;0.444284!11765-123I1;0.0324554!11768-123I4;0.0219581!10807-111A6;0.0440884!10790-110H7;0.21919!10798-110I6;0.400199!10786-110H3;0.817613!10591-108D6;0.0419843!10593-108D8;0.07863!10590-108D5;0.13323!10026-101D8;0.0247395!10096-102C6;0.0314354!10168-103B6;0.10398!10154-103A1;0.643824!10209-103G2;0.469054!10061-101H7;0.431294!10027-101D9;0.283204!10043-101F7;0.223939!10783-110G9;0.945594!10028-101E1;0.317955!10060-101H6;0.890452!10203-103F5;0.492685!10059-101H5;0.870896!10047-101G2;0.690609!10029-101E2;0.677116!10058-101H4;0.756357!10418-106C4;0.425476!10492-107B6;0.000734098!10694-109G1;0.0626016!10797-110I5;0.0148463!10057-101H3;0.0819541!10100-102D1;0.884887!10055-101H1;0.0750497!10204-103F6;0.697165!10191-103E2;0.402779!10563-108A5;0.126699
|name=8-TAWAARGCG,CNhs13480,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.671690405350328),T:2459.0(53.97%),B:18869.0(43.26%),P:1e-47
|name=8-TAWAARGCG,CNhs13480,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.671690405350328),T:2459.0(53.97%),B:18869.0(43.26%),P:1e-47
|tomtom_result=TBP#MA0108.2;3;4.51301e-05;0.0214819;0.0245912;9;TAAAAGGCG;GTATAAAAGGCGGGG;+!TBP#MA0108.2;3;5.16622e-05;0.0245912;0.0245912;9;TAAAAGGCG;GTATAAAAGGCGGGG;+!Dof3#MA0021.1;-3;0.00388674;1.85009;1;6;TAAAAGGCG;AAAGCG;+!ABF1#MA0265.1;3;0.00500508;2.38242;1;9;TAAAAGGCG;TCGTATAAAGTGATAA;+!TOD6#MA0350.1;-1;0.01048;4.9885;1;8;TAAAAGGCG;AAAACGCGATGAGCTGTGCCT;-!STP2#MA0395.1;0;0.0125158;5.95751;1;9;TAAAAGGCG;TGATCGGCGCCGCACGACGA;+!Dof2#MA0020.1;-3;0.0143342;6.82309;1;6;TAAAAGGCG;AAAGCA;+!MNB1A#MA0053.1;-3;0.0160708;7.64972;1;5;TAAAAGGCG;AAAGC;+!DAL82#MA0291.1;-1;0.0185268;8.81877;1;8;TAAAAGGCG;AATGTGCGC;+!YGR067C#MA0425.1;1;0.0186721;8.88794;1;9;TAAAAGGCG;TGAAAAAGTGGGGT;-!PBF#MA0064.1;-3;0.0188058;8.95158;1;5;TAAAAGGCG;AAAGC;+
}}
}}

Latest revision as of 13:36, 7 September 2012

Full Name: 8-TAWAARGCG,CNhs13480,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.671690405350328),T:2459.0(53.97%),B:18869.0(43.26%),P:1e-47

Motif matrix
POACGT
1285.244199.179250.8181723.759
21517.20393.442290.162558.193
31327.862.4592.4591126.222
41709.005361.473167.212221.31
51583.59651.639437.702386.063
6946.715159.8351148.353204.097
7191.802454.9151416.384395.899
8243.4411731.136309.834174.589
9204.097122.952085.23246.721

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBP#MA0108.234.51301e-050.02148190.02459129TAAAAGGCGGTATAAAAGGCGGGG+
TBP#MA0108.235.16622e-050.02459120.02459129TAAAAGGCGGTATAAAAGGCGGGG+
Dof3#MA0021.1-30.003886741.8500916TAAAAGGCGAAAGCG+
ABF1#MA0265.130.005005082.3824219TAAAAGGCGTCGTATAAAGTGATAA+
TOD6#MA0350.1-10.010484.988518TAAAAGGCGAAAACGCGATGAGCTGTGCCT-
STP2#MA0395.100.01251585.9575119TAAAAGGCGTGATCGGCGCCGCACGACGA+
Dof2#MA0020.1-30.01433426.8230916TAAAAGGCGAAAGCA+
MNB1A#MA0053.1-30.01607087.6497215TAAAAGGCGAAAGC+
DAL82#MA0291.1-10.01852688.8187718TAAAAGGCGAATGTGCGC+
YGR067C#MA0425.110.01867218.8879419TAAAAGGCGTGAAAAAGTGGGGT-
PBF#MA0064.1-30.01880588.9515815TAAAAGGCGAAAGC+
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