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MacroAPE 1083:REST f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1682.6341852907099;1215.250506032494;3264.0348894672666;2330.5573469500728!2;1204.438562725072;260.5102595804774;5992.599692688221;1034.9284...")
 
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73!10789-110H6;0.995359!10828-111C9;0.932488!10788-110H5;0.615353!10792-110H9;0.857854!10765-110E9;0.929669!10829-111D1;0.896656!10830-111D2;0.607444!10831-111D3;0.570155!10832-111D4;0.620775!10833-111D5;0.367785!10764-110E8;0.293713!10770-110F5;0.583977!10399-106A3;0.949886!10400-106A4;0.385687!10405-106A9;0.374306!10834-111D6;0.35113!10835-111D7;0.888508!10836-111D8;0.952015!10837-111D9;0.649489!10699-109G6;0.550966!10802-111A1;0.316714!10796-110I4;0.0898317!10010-101C1;0.0905725!10810-111A9;0.660382!10421-106C7;0.269131!10708-109H6;0.141223!12235-129G3;0.972746!12236-129G4;0.192351!12237-129G5;0.616876!10167-103B5;0.223935!10151-102I7;0.0113684!10428-106D5;0.104025!10795-110I3;0.87134!10805-111A4;0.997952!10052-101G7;0.931806!10189-103D9;0.839257!10589-108D4;0.294416!10425-106D2;0.0503913!10427-106D4;0.566449!10702-109G9;0.169!10432-106D9;0.0467541!10496-107C1;0.249077!10718-109I7;0.247412!10011-101C2;0.393276!10053-101G8;0.362785!10686-109F2;0.675729!10084-102B3;0.895441!10012-101C3;0.0424531!10085-102B4;0.0251982!10482-107A5;0.192533!10419-106C5;0.922986!10080-102A8;0.280059!10760-110E4;0.207077!10709-109H7;0.50256!10710-109H8;0.541992!10703-109H1;0.247831!10719-109I8;0.00722589!10642-109A3;0.261838!10177-103C6;0.0192754!10164-103B2;0.0605559!10173-103C2;0.0690446!10166-103B4;0.0358632!10083-102B2;0.147954!10188-103D8;0.0241619!10552-107I3;0.0368308!10553-107I4;0.377001!10013-101C4;0.194441!10536-107G5;0.276466!10618-108G6;0.263196!10423-106C9;0.0491228!10785-110H2;0.253539!12238-129G6;0.487221!12239-129G7;0.279275!12240-129G8;0.973472!10416-106C2;0.182808!10801-110I9;0.524693!10766-110F1;0.937899!10824-111C5;0.369892!10825-111C6;0.0954163!10826-111C7;0.0513992!10454-106G4;0.0359697!10409-106B4;0.528244!10638-108I8;0.237473!10636-108I6;0.612317!10513-107D9;0.555095!10420-106C6;0.0524748!10082-102B1;0.252647!10014-101C5;0.262198!10070-101I7;0.589837!10452-106G2;0.793513!10453-106G3;0.0918752!10449-106F8;0.255961!10042-101F6;0.255333!10069-101I6;0.0914519!10193-103E4;0.915507!10631-108I1;0.0185866!10438-106E6;0.752006!10488-107B2;0.867338!10196-103E7;0.905216!10071-101I8;0.154916!10071-101I8;0.771149!10041-101F5;0.106865!10451-106G1;0.891869!10450-106F9;0.12443!10604-108F1;0.0995015!10605-108F2;0.743013!10606-108F3;0.941247!10603-108E9;0.522957!10497-107C2;0.12034!10448-106F7;0.331785!10643-109A4;0.994151!10426-106D3;0.652208!10431-106D8;0.140802!10197-103E8;0.793789!10443-106F2;0.69354!10815-111B5;0.612857!10816-111B6;0.349526!10817-111B7;0.18542!10015-101C6;0.366882!10410-106B5;0.872383!10054-101G9;0.530281!10758-110E2;0.0662748!10711-109H9;0.618704!10040-101F4;0.503029!10470-106I2;0.0312683!10415-106C1;0.622014!10198-103E9;0.46167!10614-108G2;0.165523!10612-108F9;0.296086!10549-107H9;0.211533!10615-108G3;0.153545!10487-107B1;0.595878!10433-106E1;0.603113!10688-109F4;0.370126!10444-106F3;0.0492212!10444-106F3;0.694625!10485-107A8;0.748498!10413-106B8;0.532871!10175-103C4;0.777907!10161-103A8;0.0548489!12131-128D7;0.164757!10624-108H3;0.0578616!10712-109I1;0.508935!10205-103F7;0.557591!10206-103F8;0.927885!10207-103F9;0.650604!10050-101G5;0.0640892!10051-101G6;0.622448!10016-101C7;0.532723!10046-101G1;0.862279!10778-110G4;0.557869!10633-108I3;0.189577!10818-111B8;0.0122352!10819-111B9;0.276619!10820-111C1;0.242179!10484-107A7;0.189008!10808-111A7;0.00340816!10169-103B7;0.845149!10153-102I9;0.0547121!13425-144D5;0.14333!13433-144E4;0.640998!13437-144E8;0.209279!11904-125F5;0.0765269!11905-125F6;0.108261!10039-101F3;0.0381286!10791-110H8;0.0399143!10017-101C8;0.804513!10045-101F9;0.206824!10509-107D5;0.0362623!10839-111E2;0.439689!10692-109F8;0.854791!10079-102A7;0.234891!10078-102A6;0.52181!10721-110A1;0.827961!10569-108B2;0.91069!10570-108B3;0.352355!10571-108B4;0.298106!10647-109A8;0.329373!10752-110D5;0.10778!10782-110G8;0.0282224!10726-110A6;0.80522!10018-101C9;0.91166!10086-102B5;0.0137372!10182-103D2;0.19359!10165-103B3;0.0389523!10499-107C4;0.0373935!10408-106B3;0.88203!10019-101D1;0.974479!10068-101I5;0.0494071!10075-102A3;0.0810747!10077-102A5;0.0982908!10727-110A7;0.0373508!10775-110G1;0.753041!10412-106B7;0.281596!12231-129F8;0.317449!12232-129F9;0.258958!12233-129G1;0.398765!12234-129G2;0.280237!10414-106B9;0.278189!10170-103B8;0.223845!10183-103D3;0.016535!10150-102I6;0.0191674!10174-103C3;0.0619895!10155-103A2;0.0446167!10038-101F2;0.126843!10838-111E1;0.0321373!10759-110E3;0.436762!10514-107E1;0.690785!10465-106H6;0.215181!10691-109F7;0.827019!10843-111E6;0.838503!10844-111E7;0.149113!11747-123G1;0.118128!11748-123G2;0.348804!11749-123G3;0.525665!11750-123G4;0.41315!11751-123G5;0.856196!11840-124H4;0.790016!11752-123G6;0.505726!11753-123G7;0.602139!11754-123G8;0.652421!11755-123G9;0.594153!11756-123H1;0.950378!11833-124G6;0.583728!11760-123H5;0.825047!11836-124G9;0.665832!11758-123H3;0.160551!11835-124G8;0.40485!11762-123H7;0.753075!11838-124H2;0.717613!11757-123H2;0.989185!11759-123H4;0.807672!11761-123H6;0.710777!11842-124H6;0.830885!11837-124H1;0.650904!10568-108B1;0.967945!13230-141I8;0.314364!13231-141I9;0.374414!10696-109G3;0.370016!10493-107B7;0.459795!10494-107B8;0.262835!10850-111F4;0.023215!10851-111F5;0.0749123!10852-111F6;0.0969707!10853-111F7;0.332082!10854-111F8;0.174215!10855-111F9;0.0257783!10856-111G1;0.466044!10847-111F1;0.735888!10846-111E9;0.0253059!10848-111F2;0.0946516!10845-111E8;0.548986!10857-111G2;0.380367!10858-111G3;0.77285!10156-103A3;0.58864!11901-125F2;0.0770426!11902-125F3;0.661952!11903-125F4;0.794961!10689-109F5;0.94905!10648-109A9;0.194791!10784-110H1;0.688079!10744-110C6;0.0770351!10772-110F7;0.489131!10474-106I6;0.463656!10600-108E6;0.917591!10684-109E9;0.836058!12226-129F3;0.636985!12227-129F4;0.644501!10508-107D4;0.47753!10539-107G8;0.163416!10607-108F4;0.00640169!10555-107I6;0.406744!10774-110F9;0.0365757!10637-108I7;0.587396!10663-109C6;0.230284!10728-110A8;0.559258!10729-110A9;0.985664!10430-106D7;0.373992!10730-110B1;0.421782!10813-111B3;0.00817908!10812-111B2;0.515967!10037-101F1;0.62928!10172-103C1;0.0346903!10163-103B1;0.0120501!10076-102A4;0.0856777!10073-102A1;0.0212299!10036-101E9;0.149371!10195-103E6;0.0371984!10277-104E7;0.0277697!10434-106E2;0.114038!10550-107I1;0.130817!10545-107H5;0.445473!10544-107H4;0.834507!10704-109H2;0.0517791!10510-107D6;0.643949!10558-107I9;0.09486!10020-101D2;0.600088!10732-110B3;0.0799168!10049-101G4;0.956735!10698-109G5;0.54122!10437-106E5;0.288417!10417-106C3;0.530628!10035-101E8;0.042976!10171-103B9;0.032567!10157-103A4;0.0179001!10034-101E7;0.0722189!10072-101I9;0.0318641!10199-103F1;0.0891388!10200-103F2;0.423668!10697-109G4;0.518779!10723-110A3;0.0436465!10179-103C8;0.216121!10160-103A7;0.262138!10180-103C9;0.160898!10162-103A9;0.007901!10021-101D3;0.0442989!10840-111E3;0.85687!10706-109H4;0.761544!10033-101E6;0.681484!10032-101E5;0.0136205!10490-107B4;0.0242005!10439-106E7;0.384261!10022-101D4;0.27849!10176-103C5;0.297029!10469-106I1;0.0482459!10067-101I4;0.00256993!10411-106B6;0.799229!10471-106I3;0.290617!10030-101E3;0.859592!10475-106I7;0.502455!10787-110H4;0.404112!10477-106I9;0.9566!10695-109G2;0.438577!11771-123I7;0.446861!11772-123I8;0.484674!11773-123I9;0.47907!10093-102C3;0.034553!10442-106F1;0.609476!10442-106F1;0.895714!10201-103F3;0.856458!10639-108I9;0.462126!11843-124H7;0.00805629!11841-124H5;0.827593!10693-109F9;0.89996!10436-106E4;0.545164!10483-107A6;0.193064!10282-104F3;0.166679!10023-101D5;0.144462!10066-101I3;0.948394!10065-101I2;0.242164!10800-110I8;0.577585!10610-108F7;0.215917!10841-111E4;0.30969!10541-107H1;0.152207!10842-111E5;0.0665635!10562-108A4;0.062772!10024-101D6;0.143184!10064-101I1;0.595811!10609-108F6;0.635446!10048-101G3;0.281164!10781-110G7;0.271344!10181-103D1;0.108828!10159-103A6;0.0311844!10056-101H2;0.207563!10737-110B8;0.0502303!10025-101D7;0.434458!10044-101F8;0.0937305!10424-106D1;0.085169!10463-106H4;0.626101!10616-108G4;0.468918!10486-107A9;0.58794!10062-101H8;0.70336!10202-103F4;0.309974!10158-103A5;0.435091!10441-106E9;0.295757!10031-101E4;0.0149088!10063-101H9;0.0428626!10063-101H9;0.122603!11763-123H8;0.433525!11765-123I1;0.367004!11768-123I4;0.885954!10807-111A6;0.451514!10790-110H7;0.897119!10798-110I6;0.913673!10786-110H3;0.760872!10591-108D6;0.529609!10593-108D8;0.934976!10590-108D5;0.249431!10026-101D8;0.868108!10096-102C6;0.391998!10168-103B6;0.64007!10154-103A1;0.0209516!10209-103G2;0.0920509!10061-101H7;0.390154!10027-101D9;0.931234!10043-101F7;0.0816531!10783-110G9;0.0228452!10028-101E1;0.777203!10060-101H6;0.2463!10203-103F5;0.786298!10059-101H5;0.291432!10047-101G2;0.611025!10029-101E2;0.264102!10058-101H4;0.579134!10418-106C4;0.667107!10492-107B6;0.165448!10694-109G1;0.595642!10797-110I5;0.829705!10057-101H3;0.708637!10100-102D1;0.622763!10055-101H1;0.116291!10204-103F6;0.416896!10191-103E2;0.0884711!10563-108A5;0.854385
|name=REST_f1
|name=REST_f1
|tomtom_result=REST#MA0138.2;-1;2.8833e-37;1.37245e-34;2.74491e-34;21;GGGCGCTGTCCATGGTGCTGAA;GGCGCTGTCCATGGTGCTGAA;-!REST#MA0138.2;-2;1.92286e-21;9.15282e-19;9.15282e-19;19;GGGCGCTGTCCATGGTGCTGAA;GCGCTGTCCATGGTGCTGA;+!D#MA00445.1;-8;0.00446672;2.12616;1;11;GGGCGCTGTCCATGGTGCTGAA;TCCATTGTTCT;+!ROX1#MA0371.1;-8;0.0068876;3.2785;1;12;GGGCGCTGTCCATGGTGCTGAA;CCCATTGTTCTC;+!BAS1#MA0278.1;0;0.010184;4.84759;1;21;GGGCGCTGTCCATGGTGCTGAA;TTGACTTGACTCTGGCTGTGC;-!achi#MA0207.1;-5;0.0118911;5.66016;1;6;GGGCGCTGTCCATGGTGCTGAA;CTGTCA;-!ABF1#MA0265.1;-5;0.0128958;6.1384;1;16;GGGCGCTGTCCATGGTGCTGAA;TCGTATAAAGTGATAA;+!hth#MA0227.1;-5;0.0171925;8.18363;1;6;GGGCGCTGTCCATGGTGCTGAA;CTGTCA;-!vis#MA0252.1;-5;0.0171925;8.18363;1;6;GGGCGCTGTCCATGGTGCTGAA;CTGTCA;-!Pax4#MA0068.1;0;0.0175744;8.3654;1;22;GGGCGCTGTCCATGGTGCTGAA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-
}}
}}

Latest revision as of 13:42, 7 September 2012

Full Name: REST_f1

Motif matrix
POACGT
11682.63418529070991215.2505060324943264.03488946726662330.5573469500728
21204.438562725072260.51025958047745992.5996926882211034.9284127473732
3785.56903712376771738.178617585495043.2750750412615925.4541979903299
42461.8439299434163900.1762945378323214.227178034071871916.229525225198
51088.97163955574821027.1167258769135304.5966337461361071.791928562129
6151.593777470601487790.526543295917276.72720556195367273.62940141326214
7149.0440698433637146.0803748416667269.285371822548268128.067111234196
8340.67483158984641157.17931779129346847.93605627366146.68672208662102
9298.3970523970728279.91863875256524658.61562047928927255.545616112633
1051.43196622651888152.38776741203259.74176623938015228.91542786387902
1150.23340010578458120.49853369114750.244588587372334271.5004053574906
124180.914781918158786.44551241144592286.30479740794641238.8118360030232
131679.22147537192361158.1079558756211037.6608662137824617.486630279428
14374.65703427832557140.864502611899527818.402899455532158.55249139593838
1586.72079123740112155.896301213568058202.7458477978547.113987492991384
16102.5385269697389498.2182768615552586.411668317269628205.308455593227
17771.97766905441521349.14376769705025695.255755224778676.0997357648076
1863.893357253035038069.1270670054755186.74588758187545172.71061590137805
19170.32506175801834427.5771306370153172.867082635191177721.707652711475
20528.393558406054250.42987334312167349.822488356454363.83100763598287
215996.293735640785838.11511152814311392.692760569634265.37532000261245
224667.7965150114591886.8145816235872832.73926562200691105.1265654837478

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REST#MA0138.2-12.8833e-371.37245e-342.74491e-3421GGGCGCTGTCCATGGTGCTGAAGGCGCTGTCCATGGTGCTGAA-
REST#MA0138.2-21.92286e-219.15282e-199.15282e-1919GGGCGCTGTCCATGGTGCTGAAGCGCTGTCCATGGTGCTGA+
D#MA00445.1-80.004466722.12616111GGGCGCTGTCCATGGTGCTGAATCCATTGTTCT+
ROX1#MA0371.1-80.00688763.2785112GGGCGCTGTCCATGGTGCTGAACCCATTGTTCTC+
BAS1#MA0278.100.0101844.84759121GGGCGCTGTCCATGGTGCTGAATTGACTTGACTCTGGCTGTGC-
achi#MA0207.1-50.01189115.6601616GGGCGCTGTCCATGGTGCTGAACTGTCA-
ABF1#MA0265.1-50.01289586.1384116GGGCGCTGTCCATGGTGCTGAATCGTATAAAGTGATAA+
hth#MA0227.1-50.01719258.1836316GGGCGCTGTCCATGGTGCTGAACTGTCA-
vis#MA0252.1-50.01719258.1836316GGGCGCTGTCCATGGTGCTGAACTGTCA-
Pax4#MA0068.100.01757448.3654122GGGCGCTGTCCATGGTGCTGAAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
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