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MacroAPE 1083:CNhs12525 bl f0: Difference between revisions

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541-120B2;0.170269!11621-122B1;0.0259727!11212-116A6;0.530198!11466-119B8;0.821119!11368-117I9;0.0213676!11440-118H9;0.787611!11532-120A2;0.96629!11693-123A1;0.000309435!11292-117A5;9.56852e-05!11369-118A1;0.0164918!11441-118I1;0.442846!10007-101B4;0.178574!11520-119H8;0.000978078!11600-120H7;0.32909!11681-122H7;0.338869!11216-116B1;0.101405!12179-129A1;0.0724116!12180-129A2;4.06169e-15!12181-129A3;2.94276e-16!12176-128I7;4.97903e-15!12177-128I8;1.25204e-15!12182-129A4;8.02897e-16!12183-129A5;5.5724e-17!12184-129A6;4.06181e-14!10809-111A8;1.15096e-13!10597-108E3;0.000259976!10717-109I6;4.70529e-05!10455-106G5;0.000114675!10534-107G3;0.12801!10429-106D6;0.922627!10464-106H5;0.851221!10827-111C8;0.845765!10789-110H6;0.00165474!10828-111C9;3.24223e-05!10788-110H5;1.11765e-07!10792-110H9;0.579664!10765-110E9;1.41149e-06!10829-111D1;0.000212203!10830-111D2;0.035231!10831-111D3;0.000546931!10832-111D4;0.000276973!10833-111D5;0.000471391!10764-110E8;0.0108789!10770-110F5;0.00501439!10399-106A3;0.00865753!10400-106A4;0.0260511!10405-106A9;0.0136897!10834-111D6;0.0180279!10835-111D7;0.000578044!10836-111D8;0.0928384!10837-111D9;0.389287!10699-109G6;0.256426!10802-111A1;0.219558!10796-110I4;0.195199!10010-101C1;0.0029349!10810-111A9;3.61791e-06!10421-106C7;5.67647e-05!10708-109H6;0.0513331!12235-129G3;4.80236e-06!12236-129G4;0.00875764!12237-129G5;0.123616!10167-103B5;0.000868623!10151-102I7;3.24388e-05!10428-106D5;0.00349331!10795-110I3;0.591522!10805-111A4;0.557671!10052-101G7;6.50566e-13!10189-103D9;0.0147429!10589-108D4;1.08164e-13!10425-106D2;7.93134e-10!10427-106D4;1.09987e-05!10702-109G9;0.030978!10432-106D9;0.63416!10496-107C1;0.00818734!10718-109I7;0.00928687!10011-101C2;0.0364131!10053-101G8;0.0171533!10686-109F2;1.3678e-09!10084-102B3;0.578872!10012-101C3;1.79364e-05!10085-102B4;0.000239137!10482-107A5;1.39813e-05!10419-106C5;1.20872e-09!10080-102A8;5.05101e-11!10760-110E4;0.0770244!10709-109H7;5.46024e-05!10710-109H8;2.87111e-10!10703-109H1;2.47249e-08!10719-109I8;3.78873e-11!10642-109A3;1.72569e-06!10177-103C6;3.85899e-09!10164-103B2;4.44458e-05!10173-103C2;0.000187267!10166-103B4;2.19191e-05!10083-102B2;0.000163926!10188-103D8;2.38318e-06!10552-107I3;3.06077e-05!10553-107I4;0.00310257!10013-101C4;1.59653e-09!10536-107G5;0.163707!10618-108G6;0.0118009!10423-106C9;0.0139179!10785-110H2;0.0013107!12238-129G6;0.00135154!12239-129G7;0.182052!12240-129G8;0.690989!10416-106C2;5.2653e-05!10801-110I9;0.115062!10766-110F1;0.00981504!10824-111C5;3.57624e-05!10825-111C6;0.052545!10826-111C7;0.06607!10454-106G4;0.133073!10409-106B4;0.0113706!10638-108I8;0.0295405!10636-108I6;0.000637394!10513-107D9;0.00127992!10420-106C6;6.14158e-10!10082-102B1;6.42946e-07!10014-101C5;0.00350925!10070-101I7;0.00123762!10452-106G2;0.0168507!10453-106G3;0.637739!10449-106F8;0.428069!10042-101F6;0.267563!10069-101I6;0.0586296!10193-103E4;0.0896974!10631-108I1;2.68741e-05!10438-106E6;0.783232!10488-107B2;3.82954e-06!10196-103E7;1.03551e-05!10071-101I8;0.4094!10071-101I8;0.0431964!10041-101F5;0.000298102!10451-106G1;7.01892e-06!10450-106F9;0.00437051!10604-108F1;2.23879e-06!10605-108F2;0.00592532!10606-108F3;0.0291606!10603-108E9;0.00472957!10497-107C2;0.0317571!10448-106F7;0.00423967!10643-109A4;0.0153739!10426-106D3;1.81801e-10!10431-106D8;0.000372736!10197-103E8;0.00565991!10443-106F2;0.219805!10815-111B5;0.0959779!10816-111B6;0.000499091!10817-111B7;0.00061321!10015-101C6;0.000577749!10410-106B5;0.0663665!10054-101G9;0.000113946!10758-110E2;0.172781!10711-109H9;0.982673!10040-101F4;0.492001!10470-106I2;0.000136193!10415-106C1;9.30057e-06!10198-103E9;0.171597!10614-108G2;0.00635655!10612-108F9;9.26984e-08!10549-107H9;0.000162381!10615-108G3;1.62527e-09!10487-107B1;1.24553e-07!10433-106E1;0.0946774!10688-109F4;0.00250238!10444-106F3;3.84574e-06!10444-106F3;0.0785891!10485-107A8;0.141613!10413-106B8;7.81196e-05!10175-103C4;5.68499e-09!10161-103A8;0.000226338!12131-128D7;0.0961924!10624-108H3;0.0180481!10712-109I1;0.00070274!10205-103F7;0.011236!10206-103F8;0.128249!10207-103F9;0.180116!10050-101G5;0.00182251!10051-101G6;0.678072!10016-101C7;0.310402!10046-101G1;0.0360348!10778-110G4;0.149999!10633-108I3;0.928979!10818-111B8;4.94912e-08!10819-111B9;1.69734e-05!10820-111C1;1.31158e-05!10484-107A7;1.48534e-05!10808-111A7;0.00198725!10169-103B7;0.178351!10153-102I9;0.000313507!13425-144D5;0.00538002!13433-144E4;2.82784e-08!13437-144E8;1.84538e-08!11904-125F5;1.66266e-07!11905-125F6;1.69508e-05!10039-101F3;0.0105312!10791-110H8;0.000160284!10017-101C8;1.31062e-05!10045-101F9;0.165479!10509-107D5;0.629492!10839-111E2;0.00121831!10692-109F8;3.6189e-06!10079-102A7;3.34278e-08!10078-102A6;0.0314538!10721-110A1;0.161242!10569-108B2;2.43434e-09!10570-108B3;0.495983!10571-108B4;0.675995!10647-109A8;0.157384!10752-110D5;0.00456788!10782-110G8;0.159091!10726-110A6;0.101456!10018-101C9;0.01416!10086-102B5;0.0530122!10182-103D2;0.218715!10165-103B3;0.000847002!10499-107C4;0.00477434!10408-106B3;1.27537e-05!10019-101D1;0.00861153!10068-101I5;1.28481e-07!10075-102A3;0.00141375!10077-102A5;6.36777e-09!10727-110A7;3.37678e-21!10775-110G1;0.104803!10412-106B7;0.00220855!12231-129F8;0.0115639!12232-129F9;0.241302!12233-129G1;0.00691654!12234-129G2;0.253971!10414-106B9;0.648252!10170-103B8;1.27781e-06!10183-103D3;9.60558e-06!10150-102I6;3.20007e-05!10174-103C3;0.00119988!10155-103A2;0.0272348!10038-101F2;0.0676543!10838-111E1;0.0728693!10759-110E3;1.38956e-08!10514-107E1;0.00299425!10465-106H6;0.011369!10691-109F7;6.05988e-05!10843-111E6;0.233176!10844-111E7;1.7176e-09!11747-123G1;5.69766e-09!11748-123G2;0.230756!11749-123G3;0.0865932!11750-123G4;0.473254!11751-123G5;0.195124!11840-124H4;0.431715!11752-123G6;0.739873!11753-123G7;0.403099!11754-123G8;0.0839925!11755-123G9;0.0464153!11756-123H1;0.382753!11833-124G6;0.781587!11760-123H5;0.406328!11836-124G9;0.577968!11758-123H3;0.359742!11835-124G8;0.663553!11762-123H7;0.196055!11838-124H2;0.418643!11757-123H2;0.573372!11759-123H4;0.671996!11761-123H6;0.991214!11842-124H6;0.392368!11837-124H1;0.362124!10568-108B1;0.0224998!13230-141I8;0.306139!13231-141I9;0.696248!10696-109G3;0.472118!10493-107B7;0.661979!10494-107B8;8.6248e-05!10850-111F4;0.00116772!10851-111F5;0.000571679!10852-111F6;0.139031!10853-111F7;0.160137!10854-111F8;0.00315745!10855-111F9;5.99694e-05!10856-111G1;0.112325!10847-111F1;0.000136581!10846-111E9;0.00183245!10848-111F2;0.000227698!10845-111E8;0.00365597!10857-111G2;0.00151879!10858-111G3;0.000102734!10156-103A3;0.0134662!11901-125F2;0.00231953!11902-125F3;0.00153891!11903-125F4;0.000647712!10689-109F5;0.000394502!10648-109A9;0.00597938!10784-110H1;0.000336683!10744-110C6;0.294886!10772-110F7;1.33872e-05!10474-106I6;0.0104451!10600-108E6;0.017062!10684-109E9;0.000425925!12226-129F3;0.00650257!12227-129F4;0.000314188!10508-107D4;0.187179!10539-107G8;4.74491e-12!10607-108F4;8.50951e-09!10555-107I6;3.7254e-08!10774-110F9;1.55985e-12!10637-108I7;0.000103529!10663-109C6;9.82299e-05!10728-110A8;5.22379e-05!10729-110A9;0.00021238!10430-106D7;0.342428!10730-110B1;0.255917!10813-111B3;4.88384e-14!10812-111B2;5.11315e-06!10037-101F1;0.0578363!10172-103C1;0.000152821!10163-103B1;4.08182e-06!10076-102A4;0.00548989!10073-102A1;1.09529e-05!10036-101E9;3.94578e-05!10195-103E6;1.46012e-05!10277-104E7;9.69877e-05!10434-106E2;0.00269101!10550-107I1;3.09747e-06!10545-107H5;7.51103e-07!10544-107H4;7.29365e-07!10704-109H2;7.60951e-06!10510-107D6;0.848379!10558-107I9;0.0386857!10020-101D2;2.91941e-08!10732-110B3;0.625184!10049-101G4;0.0481387!10698-109G5;0.522788!10437-106E5;0.00338824!10417-106C3;0.019846!10035-101E8;0.288366!10171-103B9;5.87787e-05!10157-103A4;6.12898e-06!10034-101E7;0.00166193!10072-101I9;6.9361e-05!10199-103F1;3.13384e-05!10200-103F2;0.0790778!10697-109G4;0.0606895!10723-110A3;5.56684e-08!10179-103C8;0.0241024!10160-103A7;4.08605e-05!10180-103C9;0.000104421!10162-103A9;0.000212715!10021-101D3;0.00140435!10840-111E3;1.96872e-05!10706-109H4;0.0756605!10033-101E6;0.330319!10032-101E5;0.00140754!10490-107B4;1.76387e-05!10439-106E7;3.55777e-08!10022-101D4;1.46113e-05!10176-103C5;0.132098!10469-106I1;1.30294e-05!10067-101I4;0.000748912!10411-106B6;0.766934!10471-106I3;0.0132!10030-101E3;0.00914765!10475-106I7;0.564312!10787-110H4;7.225e-12!10477-106I9;0.00012403!10695-109G2;4.31724e-05!11771-123I7;0.00138822!11772-123I8;1.68917e-06!11773-123I9;0.000150397!10093-102C3;0.000415925!10442-106F1;0.0289379!10442-106F1;0.333394!10201-103F3;0.399633!10639-108I9;0.816321!11843-124H7;4.89086e-06!11841-124H5;1.13203e-08!10693-109F9;0.000134582!10436-106E4;1.36638e-08!10483-107A6;0.036256!10282-104F3;0.0924177!10023-101D5;0.639305!10066-101I3;0.480881!10065-101I2;0.443517!10800-110I8;0.46628!10610-108F7;4.9442e-12!10841-111E4;7.14569e-15!10541-107H1;1.79562e-11!10842-111E5;4.47746e-05!10562-108A4;6.47098e-12!10024-101D6;4.31211e-06!10064-101I1;0.00275912!10609-108F6;0.0881635!10048-101G3;0.00593703!10781-110G7;0.307057!10181-103D1;2.16272e-06!10159-103A6;0.0680106!10056-101H2;0.595654!10737-110B8;0.0200783!10025-101D7;0.827002!10044-101F8;5.37856e-29!10424-106D1;2.17924e-21!10463-106H4;0.064073!10616-108G4;4.04617e-05!10486-107A9;0.0226646!10062-101H8;0.0221595!10202-103F4;0.094037!10158-103A5;0.000228334!10441-106E9;0.516002!10031-101E4;4.03632e-08!10063-101H9;4.0326e-05!10063-101H9;8.1512e-05!11763-123H8;0.0232352!11765-123I1;0.398536!11768-123I4;0.875697!10807-111A6;0.802137!10790-110H7;6.2746e-08!10798-110I6;1.87291e-10!10786-110H3;8.17807e-08!10591-108D6;2.71093e-09!10593-108D8;4.07265e-10!10590-108D5;4.04468e-10!10026-101D8;2.84681e-06!10096-102C6;0.38137!10168-103B6;7.6682e-08!10154-103A1;0.00381509!10209-103G2;0.0247707!10061-101H7;0.00575653!10027-101D9;0.429697!10043-101F7;7.05664e-13!10783-110G9;3.96054e-13!10028-101E1;0.0602816!10060-101H6;0.688868!10203-103F5;0.634607!10059-101H5;0.211955!10047-101G2;0.927225!10029-101E2;2.09551e-13!10058-101H4;0.000788154!10418-106C4;0.441578!10492-107B6;0.017907!10694-109G1;0.00224922!10797-110I5;3.75446e-05!10057-101H3;0.092329!10100-102D1;0.705473!10055-101H1;0.0351509!10204-103F6;0.915!10191-103E2;0.0785558!10563-108A5;3.58533e-11
|name=CNhs12525_bl_f0
|name=CNhs12525_bl_f0
|tomtom_result=GCR2#MA0305.1;-2;0.000113795;0.0541665;0.0781347;7;TGGCTTCCCGTG;GCTTCCT;+!GABPA#MA0062.2;-1;0.000241825;0.115109;0.0781347;10;TGGCTTCCCGTG;CTCTTCCGGT;-!SPI1#MA0080.2;-3;0.000274999;0.130899;0.0781347;6;TGGCTTCCCGTG;CTTCCG;-!GCR1#MA0304.1;-1;0.000331531;0.157809;0.0781347;8;TGGCTTCCCGTG;GGCTTCCA;-!SPI1#MA0080.2;-2;0.000808347;0.384773;0.152408;7;TGGCTTCCCGTG;ACTTCCT;-!NF-kappaB#MA0061.1;1;0.00209139;0.995501;0.328118;9;TGGCTTCCCGTG;GGGAATTTCC;+!GABPA#MA0062.2;1;0.0024364;1.15973;0.328118;10;TGGCTTCCCGTG;GCCACTTCCGG;-!Eip74EF#MA0026.1;-3;0.00323368;1.53923;0.335672;7;TGGCTTCCCGTG;CTTCCGG;-!Stat3#MA0144.1;-3;0.00365918;1.74177;0.335672;9;TGGCTTCCCGTG;CTTCCTGGAA;-!ELK4#MA0076.1;-2;0.00392062;1.86621;0.335672;9;TGGCTTCCCGTG;ACTTCCGGT;-!ELK1#MA0028.1;-3;0.00412554;1.96376;0.335672;9;TGGCTTCCCGTG;CTTCCGGCTC;-!SPIB#MA0081.1;-4;0.00472728;2.25019;0.335672;7;TGGCTTCCCGTG;TTCCTCT;-!STAT1#MA0137.2;-1;0.0048451;2.30627;0.335672;11;TGGCTTCCCGTG;CATTTCCCGGAAACC;+!FEV#MA0156.1;-2;0.00498498;2.37285;0.335672;8;TGGCTTCCCGTG;ATTTCCTG;-!ELF5#MA0136.1;-1;0.00593955;2.82723;0.373287;9;TGGCTTCCCGTG;TACTTCCTT;+!che-1#MA0260.1;-1;0.00646529;3.07748;0.380932;6;TGGCTTCCCGTG;GGTTTC;-!NFKB1#MA0105.1;1;0.00707029;3.36546;0.392074;10;TGGCTTCCCGTG;GGGGATTCCCC;+!ETS1#MA0098.1;-3;0.00781364;3.71929;0.409223;6;TGGCTTCCCGTG;CTTCCG;+!Klf4#MA0039.1;-2;0.00918238;4.37081;0.455598;10;TGGCTTCCCGTG;CCTTCCTTTA;-!REL#MA0101.1;2;0.0133805;6.3691;0.630697;8;TGGCTTCCCGTG;GGGGATTTCC;+!dl_2#MA0023.1;2;0.0164811;7.84502;0.662001;8;TGGCTTCCCGTG;GGGGATTTCC;+!znf143#MA0088.1;-1;0.0169974;8.09078;0.662001;11;TGGCTTCCCGTG;GATTTCCCATAATGCCTTGC;+!PUT3#MA0358.1;-4;0.017223;8.19815;0.662001;8;TGGCTTCCCGTG;TTCCCGGG;-!abi4#MA0123.1;-1;0.018258;8.69079;0.662001;10;TGGCTTCCCGTG;CGGTGCCCCC;+!PHD1#MA0355.1;-1;0.018258;8.69079;0.662001;10;TGGCTTCCCGTG;TGCTGCAGGT;-!ARO80#MA0273.1;2;0.0202711;9.64906;0.707773;12;TGGCTTCCCGTG;ACATACTTGCCGAGAATTATC;-
}}
}}

Latest revision as of 13:49, 7 September 2012

Full Name: CNhs12525_bl_f0

Motif matrix
POACGT
19.26773172484457527.57391677590905585.1774945288182486.21402796532516
227.30172399129465855.43243100228756118.897806704744916.601209296569925
361.5844220556808041.15425304744300786.4401811561912759.054314735581904
40.0187.382628189543480.020.850542805353545
50.00.82867292387445320.0207.40449807102254
60.00.075.64803257608811132.5851384188089
70.0208.2331709948970.00.0
80.0208.2331709948970.00.0
90.0138.63407652620810.069.59909446868895
100.082.6176028819075393.5911403139668732.02442779902259
1134.4787987286432826.21619476737133855.3596420650130692.17853543386936
1248.4127337915972230.50258523633465365.890457190163363.427394776801854

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCR2#MA0305.1-20.0001137950.05416650.07813477TGGCTTCCCGTGGCTTCCT+
GABPA#MA0062.2-10.0002418250.1151090.078134710TGGCTTCCCGTGCTCTTCCGGT-
SPI1#MA0080.2-30.0002749990.1308990.07813476TGGCTTCCCGTGCTTCCG-
GCR1#MA0304.1-10.0003315310.1578090.07813478TGGCTTCCCGTGGGCTTCCA-
SPI1#MA0080.2-20.0008083470.3847730.1524087TGGCTTCCCGTGACTTCCT-
NF-kappaB#MA0061.110.002091390.9955010.3281189TGGCTTCCCGTGGGGAATTTCC+
GABPA#MA0062.210.00243641.159730.32811810TGGCTTCCCGTGGCCACTTCCGG-
Eip74EF#MA0026.1-30.003233681.539230.3356727TGGCTTCCCGTGCTTCCGG-
Stat3#MA0144.1-30.003659181.741770.3356729TGGCTTCCCGTGCTTCCTGGAA-
ELK4#MA0076.1-20.003920621.866210.3356729TGGCTTCCCGTGACTTCCGGT-
ELK1#MA0028.1-30.004125541.963760.3356729TGGCTTCCCGTGCTTCCGGCTC-
SPIB#MA0081.1-40.004727282.250190.3356727TGGCTTCCCGTGTTCCTCT-
STAT1#MA0137.2-10.00484512.306270.33567211TGGCTTCCCGTGCATTTCCCGGAAACC+
FEV#MA0156.1-20.004984982.372850.3356728TGGCTTCCCGTGATTTCCTG-
ELF5#MA0136.1-10.005939552.827230.3732879TGGCTTCCCGTGTACTTCCTT+
che-1#MA0260.1-10.006465293.077480.3809326TGGCTTCCCGTGGGTTTC-
NFKB1#MA0105.110.007070293.365460.39207410TGGCTTCCCGTGGGGGATTCCCC+
ETS1#MA0098.1-30.007813643.719290.4092236TGGCTTCCCGTGCTTCCG+
Klf4#MA0039.1-20.009182384.370810.45559810TGGCTTCCCGTGCCTTCCTTTA-
REL#MA0101.120.01338056.36910.6306978TGGCTTCCCGTGGGGGATTTCC+
dl_2#MA0023.120.01648117.845020.6620018TGGCTTCCCGTGGGGGATTTCC+
znf143#MA0088.1-10.01699748.090780.66200111TGGCTTCCCGTGGATTTCCCATAATGCCTTGC+
PUT3#MA0358.1-40.0172238.198150.6620018TGGCTTCCCGTGTTCCCGGG-
abi4#MA0123.1-10.0182588.690790.66200110TGGCTTCCCGTGCGGTGCCCCC+
PHD1#MA0355.1-10.0182588.690790.66200110TGGCTTCCCGTGTGCTGCAGGT-
ARO80#MA0273.120.02027119.649060.70777312TGGCTTCCCGTGACATACTTGCCGAGAATTATC-
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