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MacroAPE 1083:5-ATTGGGCGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;291.232;60.833;84.783;42.152!2;85.741;49.337;94.363;249.559!3;72.808;12.933;34.488;358.771!4;108.254;28.74;244.29;97.716!5;64.186;73.766;288...")
 
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;0.341435!10464-106H5;0.345297!10827-111C8;0.34401!10789-110H6;0.780832!10828-111C9;0.813913!10788-110H5;0.155865!10792-110H9;0.550731!10765-110E9;0.934591!10829-111D1;0.979721!10830-111D2;0.924911!10831-111D3;0.88652!10832-111D4;0.970351!10833-111D5;0.531787!10764-110E8;0.523669!10770-110F5;0.342934!10399-106A3;0.447015!10400-106A4;0.594558!10405-106A9;0.534329!10834-111D6;0.548542!10835-111D7;0.596606!10836-111D8;0.0441569!10837-111D9;0.197892!10699-109G6;0.280164!10802-111A1;0.462501!10796-110I4;0.117272!10010-101C1;0.687682!10810-111A9;0.303779!10421-106C7;0.217128!10708-109H6;0.121474!12235-129G3;0.202414!12236-129G4;0.250631!12237-129G5;0.29463!10167-103B5;0.251301!10151-102I7;0.0658395!10428-106D5;0.0410383!10795-110I3;0.634534!10805-111A4;0.440305!10052-101G7;0.0960204!10189-103D9;0.504664!10589-108D4;0.309568!10425-106D2;0.916317!10427-106D4;0.13073!10702-109G9;0.466394!10432-106D9;0.336856!10496-107C1;0.101027!10718-109I7;0.852975!10011-101C2;0.81292!10053-101G8;0.509153!10686-109F2;0.0612785!10084-102B3;0.131391!10012-101C3;0.00912616!10085-102B4;0.0296314!10482-107A5;0.0960127!10419-106C5;0.531383!10080-102A8;0.246697!10760-110E4;0.985532!10709-109H7;0.895285!10710-109H8;0.00702877!10703-109H1;0.185157!10719-109I8;0.619378!10642-109A3;0.0711511!10177-103C6;0.203814!10164-103B2;0.0243696!10173-103C2;0.00610325!10166-103B4;0.224241!10083-102B2;0.299279!10188-103D8;0.0182251!10552-107I3;0.0547106!10553-107I4;0.478004!10013-101C4;0.115032!10536-107G5;0.427632!10618-108G6;0.376016!10423-106C9;0.0342908!10785-110H2;0.0226961!12238-129G6;0.766295!12239-129G7;0.965063!12240-129G8;0.991797!10416-106C2;0.387166!10801-110I9;0.732272!10766-110F1;0.748266!10824-111C5;0.374147!10825-111C6;0.149464!10826-111C7;0.153505!10454-106G4;0.116332!10409-106B4;0.43015!10638-108I8;0.0473223!10636-108I6;0.0890107!10513-107D9;0.00170025!10420-106C6;0.320161!10082-102B1;0.345905!10014-101C5;0.174733!10070-101I7;0.299512!10452-106G2;0.237742!10453-106G3;0.113402!10449-106F8;0.281346!10042-101F6;0.252354!10069-101I6;0.0100303!10193-103E4;0.248529!10631-108I1;0.00417314!10438-106E6;0.686659!10488-107B2;0.13714!10196-103E7;0.674367!10071-101I8;0.201708!10071-101I8;0.0839986!10041-101F5;0.483901!10451-106G1;0.426057!10450-106F9;0.234742!10604-108F1;0.530909!10605-108F2;0.187!10606-108F3;0.51448!10603-108E9;0.215286!10497-107C2;0.459623!10448-106F7;0.325244!10643-109A4;0.0502141!10426-106D3;0.0537463!10431-106D8;0.0113747!10197-103E8;0.00343819!10443-106F2;0.0991122!10815-111B5;0.0595591!10816-111B6;0.232704!10817-111B7;0.151469!10015-101C6;0.202939!10410-106B5;0.613058!10054-101G9;0.66177!10758-110E2;0.373608!10711-109H9;0.421968!10040-101F4;0.066965!10470-106I2;0.0300176!10415-106C1;0.256388!10198-103E9;0.257986!10614-108G2;0.230016!10612-108F9;0.569096!10549-107H9;0.889132!10615-108G3;0.281706!10487-107B1;0.895295!10433-106E1;0.980974!10688-109F4;0.0752119!10444-106F3;0.757012!10444-106F3;0.035222!10485-107A8;0.0481379!10413-106B8;0.00245655!10175-103C4;0.00966812!10161-103A8;0.0185838!12131-128D7;0.041615!10624-108H3;0.61591!10712-109I1;0.919876!10205-103F7;0.188307!10206-103F8;0.149443!10207-103F9;0.149072!10050-101G5;0.666913!10051-101G6;0.425461!10016-101C7;0.0533063!10046-101G1;0.260545!10778-110G4;0.853961!10633-108I3;0.674133!10818-111B8;0.166667!10819-111B9;0.202581!10820-111C1;0.279626!10484-107A7;0.209081!10808-111A7;0.160651!10169-103B7;0.610047!10153-102I9;0.0197327!13425-144D5;0.036618!13433-144E4;0.0472637!13437-144E8;0.00785372!11904-125F5;0.0181202!11905-125F6;0.756191!10039-101F3;0.261046!10791-110H8;0.0247839!10017-101C8;0.390343!10045-101F9;0.505635!10509-107D5;0.752959!10839-111E2;0.988518!10692-109F8;0.256323!10079-102A7;0.00337525!10078-102A6;0.089009!10721-110A1;0.0908806!10569-108B2;0.0076076!10570-108B3;0.0815786!10571-108B4;0.0557793!10647-109A8;0.285883!10752-110D5;0.00181842!10782-110G8;0.141025!10726-110A6;0.660712!10018-101C9;0.0400257!10086-102B5;0.0113966!10182-103D2;0.937115!10165-103B3;0.0865075!10499-107C4;0.0190428!10408-106B3;0.9408!10019-101D1;0.105114!10068-101I5;0.685979!10075-102A3;0.834477!10077-102A5;0.369549!10727-110A7;0.159815!10775-110G1;0.183641!10412-106B7;0.766258!12231-129F8;0.194996!12232-129F9;0.990065!12233-129G1;0.845422!12234-129G2;0.9427!10414-106B9;0.607573!10170-103B8;0.185707!10183-103D3;0.085073!10150-102I6;0.0422126!10174-103C3;0.0590232!10155-103A2;0.213018!10038-101F2;0.0883418!10838-111E1;0.0432616!10759-110E3;0.253489!10514-107E1;0.00187929!10465-106H6;0.352529!10691-109F7;0.777375!10843-111E6;0.166745!10844-111E7;0.706221!11747-123G1;0.979272!11748-123G2;0.520434!11749-123G3;0.946744!11750-123G4;0.224867!11751-123G5;0.367443!11840-124H4;0.257675!11752-123G6;0.135476!11753-123G7;0.243748!11754-123G8;0.426179!11755-123G9;0.884448!11756-123H1;0.247888!11833-124G6;0.321831!11760-123H5;0.639575!11836-124G9;0.338963!11758-123H3;0.236669!11835-124G8;0.596141!11762-123H7;0.68381!11838-124H2;0.455861!11757-123H2;0.4041!11759-123H4;0.372608!11761-123H6;0.713376!11842-124H6;0.790142!11837-124H1;0.794965!10568-108B1;0.81278!13230-141I8;0.000608347!13231-141I9;0.902009!10696-109G3;0.991567!10493-107B7;0.0767013!10494-107B8;0.120394!10850-111F4;0.0205572!10851-111F5;0.931864!10852-111F6;0.0120936!10853-111F7;0.476363!10854-111F8;0.0455539!10855-111F9;0.147568!10856-111G1;0.791814!10847-111F1;0.891011!10846-111E9;0.0246948!10848-111F2;0.0539318!10845-111E8;0.18728!10857-111G2;0.195517!10858-111G3;0.0351716!10156-103A3;0.280356!11901-125F2;0.0477859!11902-125F3;0.847322!11903-125F4;0.512111!10689-109F5;0.172255!10648-109A9;0.713169!10784-110H1;0.27837!10744-110C6;0.0817909!10772-110F7;0.30886!10474-106I6;0.607731!10600-108E6;0.931884!10684-109E9;0.0526337!12226-129F3;0.10331!12227-129F4;0.881459!10508-107D4;0.50186!10539-107G8;0.910405!10607-108F4;0.468172!10555-107I6;0.560571!10774-110F9;0.678049!10637-108I7;0.371416!10663-109C6;0.495198!10728-110A8;0.176264!10729-110A9;0.203304!10430-106D7;0.384579!10730-110B1;0.180819!10813-111B3;0.301353!10812-111B2;0.36948!10037-101F1;0.421699!10172-103C1;0.0210636!10163-103B1;0.0955414!10076-102A4;0.0854277!10073-102A1;0.026227!10036-101E9;0.290904!10195-103E6;0.017458!10277-104E7;0.0239794!10434-106E2;0.167362!10550-107I1;0.011121!10545-107H5;0.0406305!10544-107H4;0.102111!10704-109H2;0.00971303!10510-107D6;0.0679665!10558-107I9;0.138733!10020-101D2;0.0315409!10732-110B3;0.189187!10049-101G4;0.112821!10698-109G5;0.00104991!10437-106E5;0.0178484!10417-106C3;0.485825!10035-101E8;0.01074!10171-103B9;0.0348316!10157-103A4;0.0797261!10034-101E7;0.0489987!10072-101I9;0.0356121!10199-103F1;0.423382!10200-103F2;0.142088!10697-109G4;0.248895!10723-110A3;0.797942!10179-103C8;0.480899!10160-103A7;0.177662!10180-103C9;0.193347!10162-103A9;0.0671032!10021-101D3;0.0236769!10840-111E3;0.913171!10706-109H4;0.741249!10033-101E6;0.0112867!10032-101E5;0.0538512!10490-107B4;0.0137072!10439-106E7;0.413178!10022-101D4;0.0888771!10176-103C5;0.34371!10469-106I1;0.0268637!10067-101I4;0.0241969!10411-106B6;0.586834!10471-106I3;0.338107!10030-101E3;0.977147!10475-106I7;0.183035!10787-110H4;0.359293!10477-106I9;0.272772!10695-109G2;0.0278402!11771-123I7;0.779791!11772-123I8;0.385111!11773-123I9;0.918839!10093-102C3;0.777556!10442-106F1;0.0474258!10442-106F1;0.150485!10201-103F3;0.20068!10639-108I9;0.273552!11843-124H7;0.27869!11841-124H5;0.578062!10693-109F9;0.158466!10436-106E4;0.218089!10483-107A6;0.268785!10282-104F3;0.424382!10023-101D5;0.0409514!10066-101I3;0.0774597!10065-101I2;0.352117!10800-110I8;0.654189!10610-108F7;0.463157!10841-111E4;0.344146!10541-107H1;0.34247!10842-111E5;0.217151!10562-108A4;0.264734!10024-101D6;0.639143!10064-101I1;0.179426!10609-108F6;0.236688!10048-101G3;0.710181!10781-110G7;0.469559!10181-103D1;0.790816!10159-103A6;0.0937677!10056-101H2;0.0465023!10737-110B8;0.151005!10025-101D7;0.0655382!10044-101F8;0.257272!10424-106D1;0.984067!10463-106H4;0.56827!10616-108G4;0.362748!10486-107A9;0.381751!10062-101H8;0.8269!10202-103F4;0.616771!10158-103A5;0.0847206!10441-106E9;0.0917162!10031-101E4;0.429352!10063-101H9;0.015268!10063-101H9;0.49183!11763-123H8;0.025677!11765-123I1;0.938791!11768-123I4;0.262564!10807-111A6;0.480631!10790-110H7;0.0211308!10798-110I6;0.10687!10786-110H3;0.206004!10591-108D6;0.0496683!10593-108D8;0.14238!10590-108D5;0.233477!10026-101D8;0.214249!10096-102C6;0.113619!10168-103B6;0.546263!10154-103A1;0.0271391!10209-103G2;0.0176352!10061-101H7;0.215434!10027-101D9;0.403489!10043-101F7;0.6912!10783-110G9;0.270877!10028-101E1;0.239139!10060-101H6;0.0586716!10203-103F5;0.240743!10059-101H5;0.270273!10047-101G2;0.302459!10029-101E2;0.375986!10058-101H4;0.503658!10418-106C4;0.580753!10492-107B6;0.000802073!10694-109G1;0.0153637!10797-110I5;0.363257!10057-101H3;0.394193!10100-102D1;0.461841!10055-101H1;0.223247!10204-103F6;0.656058!10191-103E2;0.744055!10563-108A5;0.20816
|name=5-ATTGGGCGG,CNhs13738,BestGuess:TFDP1_f1_HM09(0.691373558847251),T:479.0(25.18%),B:6485.5(13.93%),P:1e-37
|name=5-ATTGGGCGG,CNhs13738,BestGuess:TFDP1_f1_HM09(0.691373558847251),T:479.0(25.18%),B:6485.5(13.93%),P:1e-37
|tomtom_result=btd#MA0443.1;0;0.00092544;0.440509;0.881019;9;ATTGGGCGG;AGGGGGCGGA;+!YGR067C#MA0425.1;2;0.00263711;1.25527;0.986945;9;ATTGGGCGG;TGAAAAAGTGGGGT;-!SP1#MA0079.2;-2;0.00532621;2.53528;0.986945;7;ATTGGGCGG;GGGGCGGGGT;+!UME6#MA0412.1;-2;0.00560181;2.66646;0.986945;7;ATTGGGCGG;TCGGCGGCTAATT;+!UGA3#MA0410.1;-3;0.00569559;2.7111;0.986945;6;ATTGGGCGG;CGGCGGGA;+!DAL82#MA0291.1;0;0.00622024;2.96084;0.986945;9;ATTGGGCGG;AATGTGCGC;+!Klf4#MA0039.2;-2;0.00739549;3.52025;1;7;ATTGGGCGG;TGGGTGGGGC;+!Egr1#MA0162.1;2;0.0101273;4.82061;1;9;ATTGGGCGG;TGCGTGGGCGT;+!SP1#MA0079.2;-1;0.0106694;5.07861;1;8;ATTGGGCGG;GGGGGCGGGG;-!CHA4#MA0283.1;-4;0.0124509;5.92665;1;5;ATTGGGCGG;GGCGGAGA;+!IME1#MA0320.1;-1;0.0143474;6.82934;1;8;ATTGGGCGG;CTCGGCGG;-!E2F1#MA0024.1;-1;0.015022;7.15045;1;8;ATTGGGCGG;TTTGGCGC;+!MIG2#MA0338.1;-4;0.0174825;8.32166;1;5;ATTGGGCGG;TGCGGGG;-
}}
}}

Latest revision as of 13:53, 7 September 2012

Full Name: 5-ATTGGGCGG,CNhs13738,BestGuess:TFDP1_f1_HM09(0.691373558847251),T:479.0(25.18%),B:6485.5(13.93%),P:1e-37

Motif matrix
POACGT
1291.23260.83384.78342.152
285.74149.33794.363249.559
372.80812.93334.488358.771
4108.25428.74244.2997.716
564.18673.766288.83752.211
637.84134.488345.83860.833
755.085320.45149.81653.648
826.34534.967362.60355.085
933.5311.496411.9422.034

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
btd#MA0443.100.000925440.4405090.8810199ATTGGGCGGAGGGGGCGGA+
YGR067C#MA0425.120.002637111.255270.9869459ATTGGGCGGTGAAAAAGTGGGGT-
SP1#MA0079.2-20.005326212.535280.9869457ATTGGGCGGGGGGCGGGGT+
UME6#MA0412.1-20.005601812.666460.9869457ATTGGGCGGTCGGCGGCTAATT+
UGA3#MA0410.1-30.005695592.71110.9869456ATTGGGCGGCGGCGGGA+
DAL82#MA0291.100.006220242.960840.9869459ATTGGGCGGAATGTGCGC+
Klf4#MA0039.2-20.007395493.5202517ATTGGGCGGTGGGTGGGGC+
Egr1#MA0162.120.01012734.8206119ATTGGGCGGTGCGTGGGCGT+
SP1#MA0079.2-10.01066945.0786118ATTGGGCGGGGGGGCGGGG-
CHA4#MA0283.1-40.01245095.9266515ATTGGGCGGGGCGGAGA+
IME1#MA0320.1-10.01434746.8293418ATTGGGCGGCTCGGCGG-
E2F1#MA0024.1-10.0150227.1504518ATTGGGCGGTTTGGCGC+
MIG2#MA0338.1-40.01748258.3216615ATTGGGCGGTGCGGGG-
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