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MacroAPE 1083:PKNX1 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;3.734693877551022;2.0816326530612272;3.183673469387751;0.0!2;3.183673469387751;0.979591836734694;3.734693877551022;1.102040816326533!3;2.755...")
 
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165!10789-110H6;0.549255!10828-111C9;0.482616!10788-110H5;0.771085!10792-110H9;0.102967!10765-110E9;0.641049!10829-111D1;0.701366!10830-111D2;0.0802074!10831-111D3;0.25731!10832-111D4;0.363983!10833-111D5;0.363578!10764-110E8;0.175013!10770-110F5;0.107849!10399-106A3;0.308577!10400-106A4;0.376154!10405-106A9;0.400052!10834-111D6;0.400107!10835-111D7;0.276954!10836-111D8;0.346375!10837-111D9;0.642082!10699-109G6;0.684538!10802-111A1;0.578611!10796-110I4;0.529171!10010-101C1;0.213133!10810-111A9;0.829845!10421-106C7;0.130592!10708-109H6;0.465491!12235-129G3;0.633747!12236-129G4;0.904512!12237-129G5;0.438719!10167-103B5;0.682855!10151-102I7;0.0171737!10428-106D5;0.015088!10795-110I3;0.407212!10805-111A4;0.251305!10052-101G7;0.69341!10189-103D9;0.91276!10589-108D4;0.258314!10425-106D2;0.790109!10427-106D4;0.457909!10702-109G9;0.767738!10432-106D9;0.317096!10496-107C1;0.0422614!10718-109I7;0.577449!10011-101C2;0.225176!10053-101G8;0.456328!10686-109F2;0.52694!10084-102B3;0.43646!10012-101C3;0.0494986!10085-102B4;0.0233225!10482-107A5;0.00182168!10419-106C5;0.952412!10080-102A8;0.940112!10760-110E4;0.45514!10709-109H7;0.00121583!10710-109H8;0.249528!10703-109H1;0.514424!10719-109I8;0.6483!10642-109A3;0.550608!10177-103C6;0.574591!10164-103B2;0.0411936!10173-103C2;0.0717051!10166-103B4;0.00277373!10083-102B2;0.00326309!10188-103D8;0.00630639!10552-107I3;0.024905!10553-107I4;0.387001!10013-101C4;0.150805!10536-107G5;0.573636!10618-108G6;0.0864072!10423-106C9;0.222069!10785-110H2;0.101735!12238-129G6;0.391602!12239-129G7;0.871643!12240-129G8;0.119168!10416-106C2;0.622685!10801-110I9;0.204486!10766-110F1;0.232118!10824-111C5;0.530745!10825-111C6;0.709808!10826-111C7;0.624602!10454-106G4;0.749363!10409-106B4;0.800745!10638-108I8;0.41271!10636-108I6;0.552834!10513-107D9;0.0562011!10420-106C6;0.0230553!10082-102B1;0.729726!10014-101C5;0.305249!10070-101I7;0.423765!10452-106G2;0.175016!10453-106G3;0.597113!10449-106F8;0.261078!10042-101F6;0.208949!10069-101I6;0.0546717!10193-103E4;0.542118!10631-108I1;0.0825133!10438-106E6;0.322637!10488-107B2;0.0239094!10196-103E7;0.916938!10071-101I8;0.491785!10071-101I8;0.488927!10041-101F5;0.00161772!10451-106G1;0.190259!10450-106F9;0.830312!10604-108F1;0.857568!10605-108F2;0.271661!10606-108F3;0.320991!10603-108E9;0.236475!10497-107C2;0.199452!10448-106F7;0.0364716!10643-109A4;0.413183!10426-106D3;0.0860951!10431-106D8;0.391939!10197-103E8;0.0783962!10443-106F2;0.628825!10815-111B5;0.515613!10816-111B6;0.197905!10817-111B7;0.191134!10015-101C6;0.174848!10410-106B5;0.494385!10054-101G9;0.29261!10758-110E2;0.0823154!10711-109H9;0.245412!10040-101F4;0.105421!10470-106I2;0.0409244!10415-106C1;0.100121!10198-103E9;0.134413!10614-108G2;0.332285!10612-108F9;0.0103894!10549-107H9;0.306151!10615-108G3;0.907218!10487-107B1;0.0624246!10433-106E1;0.239327!10688-109F4;0.994633!10444-106F3;0.490035!10444-106F3;0.481765!10485-107A8;0.636759!10413-106B8;0.0186132!10175-103C4;0.728048!10161-103A8;0.0441135!12131-128D7;0.039663!10624-108H3;0.313512!10712-109I1;0.692709!10205-103F7;0.411099!10206-103F8;0.594244!10207-103F9;0.309226!10050-101G5;0.728043!10051-101G6;0.907476!10016-101C7;0.521985!10046-101G1;0.115042!10778-110G4;0.307249!10633-108I3;0.260104!10818-111B8;0.0186913!10819-111B9;0.0258475!10820-111C1;0.0250441!10484-107A7;0.0184885!10808-111A7;0.736354!10169-103B7;0.327482!10153-102I9;0.0259771!13425-144D5;0.0150694!13433-144E4;0.0135026!13437-144E8;0.028175!11904-125F5;0.0175608!11905-125F6;0.582192!10039-101F3;0.796041!10791-110H8;0.017585!10017-101C8;0.304933!10045-101F9;0.113522!10509-107D5;0.356482!10839-111E2;0.290153!10692-109F8;0.24406!10079-102A7;0.482975!10078-102A6;0.283142!10721-110A1;0.496325!10569-108B2;0.483648!10570-108B3;0.719973!10571-108B4;0.478847!10647-109A8;0.710603!10752-110D5;0.0730676!10782-110G8;0.669088!10726-110A6;0.834938!10018-101C9;0.558343!10086-102B5;0.641807!10182-103D2;0.34849!10165-103B3;0.0303566!10499-107C4;0.0469455!10408-106B3;0.410966!10019-101D1;0.100819!10068-101I5;0.8798!10075-102A3;0.660598!10077-102A5;0.815653!10727-110A7;0.900297!10775-110G1;0.148135!10412-106B7;0.280578!12231-129F8;0.210985!12232-129F9;0.0886397!12233-129G1;0.34287!12234-129G2;0.239753!10414-106B9;0.261843!10170-103B8;0.337373!10183-103D3;0.0132585!10150-102I6;0.0313564!10174-103C3;0.00989421!10155-103A2;0.0835935!10038-101F2;0.0533803!10838-111E1;0.0638959!10759-110E3;0.0946837!10514-107E1;0.0409469!10465-106H6;0.271903!10691-109F7;0.681248!10843-111E6;0.105609!10844-111E7;0.905199!11747-123G1;0.13328!11748-123G2;0.114298!11749-123G3;0.138008!11750-123G4;0.133747!11751-123G5;0.666976!11840-124H4;0.595127!11752-123G6;0.866238!11753-123G7;0.125532!11754-123G8;0.310643!11755-123G9;0.416051!11756-123H1;0.0156192!11833-124G6;0.0271315!11760-123H5;0.0417207!11836-124G9;0.0309878!11758-123H3;0.0684656!11835-124G8;0.0799249!11762-123H7;0.0767718!11838-124H2;0.08116!11757-123H2;0.10061!11759-123H4;0.00308993!11761-123H6;0.157906!11842-124H6;0.0758242!11837-124H1;0.0304429!10568-108B1;0.0704029!13230-141I8;0.666098!13231-141I9;0.92579!10696-109G3;0.662912!10493-107B7;0.123544!10494-107B8;0.305242!10850-111F4;0.0416613!10851-111F5;0.153146!10852-111F6;0.0423049!10853-111F7;0.818181!10854-111F8;0.497261!10855-111F9;0.530705!10856-111G1;0.0356741!10847-111F1;0.464806!10846-111E9;0.401318!10848-111F2;0.152106!10845-111E8;0.15712!10857-111G2;0.534387!10858-111G3;0.653812!10156-103A3;0.378494!11901-125F2;0.00587368!11902-125F3;0.538719!11903-125F4;0.48802!10689-109F5;0.509989!10648-109A9;0.338676!10784-110H1;0.380158!10744-110C6;0.387093!10772-110F7;0.136757!10474-106I6;0.335179!10600-108E6;0.39442!10684-109E9;0.632743!12226-129F3;0.985515!12227-129F4;0.174178!10508-107D4;0.0320734!10539-107G8;0.716104!10607-108F4;0.28114!10555-107I6;0.493411!10774-110F9;0.774263!10637-108I7;0.017315!10663-109C6;0.755978!10728-110A8;0.291111!10729-110A9;0.503541!10430-106D7;0.264987!10730-110B1;0.731892!10813-111B3;0.500794!10812-111B2;0.427825!10037-101F1;0.56567!10172-103C1;0.0561851!10163-103B1;0.00605978!10076-102A4;0.0139268!10073-102A1;0.0264203!10036-101E9;0.00492392!10195-103E6;0.0184131!10277-104E7;0.0186734!10434-106E2;0.0498691!10550-107I1;0.17853!10545-107H5;0.118538!10544-107H4;0.315999!10704-109H2;0.0397308!10510-107D6;0.160954!10558-107I9;0.930492!10020-101D2;0.765378!10732-110B3;0.867275!10049-101G4;0.121533!10698-109G5;0.353406!10437-106E5;0.640621!10417-106C3;0.215481!10035-101E8;0.779644!10171-103B9;0.0385112!10157-103A4;0.0293096!10034-101E7;0.0104688!10072-101I9;0.0371944!10199-103F1;0.00686553!10200-103F2;0.892503!10697-109G4;0.266081!10723-110A3;0.995251!10179-103C8;0.0390658!10160-103A7;0.0384525!10180-103C9;0.180314!10162-103A9;0.4409!10021-101D3;0.293126!10840-111E3;0.869755!10706-109H4;0.74434!10033-101E6;0.980284!10032-101E5;0.0393705!10490-107B4;0.0260909!10439-106E7;0.0843159!10022-101D4;0.125702!10176-103C5;0.520302!10469-106I1;0.050514!10067-101I4;0.548539!10411-106B6;0.248544!10471-106I3;0.911479!10030-101E3;0.21902!10475-106I7;0.0569471!10787-110H4;0.586164!10477-106I9;0.252899!10695-109G2;0.399292!11771-123I7;0.592337!11772-123I8;0.544515!11773-123I9;0.135998!10093-102C3;0.0996132!10442-106F1;0.904923!10442-106F1;0.359036!10201-103F3;0.527273!10639-108I9;0.547635!11843-124H7;0.0461756!11841-124H5;0.594772!10693-109F9;0.991103!10436-106E4;0.257787!10483-107A6;0.569233!10282-104F3;0.57177!10023-101D5;0.184872!10066-101I3;0.221348!10065-101I2;0.57587!10800-110I8;0.352892!10610-108F7;0.359162!10841-111E4;0.844685!10541-107H1;0.10749!10842-111E5;0.638514!10562-108A4;0.595059!10024-101D6;0.871987!10064-101I1;0.419119!10609-108F6;0.568285!10048-101G3;0.678824!10781-110G7;0.478707!10181-103D1;0.588023!10159-103A6;0.0605425!10056-101H2;0.0705469!10737-110B8;0.123535!10025-101D7;0.100238!10044-101F8;0.835616!10424-106D1;0.694415!10463-106H4;0.254987!10616-108G4;0.344991!10486-107A9;0.390145!10062-101H8;0.526888!10202-103F4;0.246139!10158-103A5;0.389876!10441-106E9;0.0714761!10031-101E4;0.739347!10063-101H9;0.0191981!10063-101H9;0.00174502!11763-123H8;0.201747!11765-123I1;0.795751!11768-123I4;0.751659!10807-111A6;0.801711!10790-110H7;0.571159!10798-110I6;0.563712!10786-110H3;0.618877!10591-108D6;0.0658111!10593-108D8;0.0696151!10590-108D5;0.244793!10026-101D8;0.176534!10096-102C6;0.348498!10168-103B6;0.874454!10154-103A1;0.0175363!10209-103G2;0.0421596!10061-101H7;0.266611!10027-101D9;0.552875!10043-101F7;0.859974!10783-110G9;0.680639!10028-101E1;0.0279611!10060-101H6;0.87858!10203-103F5;0.809971!10059-101H5;0.362111!10047-101G2;0.413789!10029-101E2;0.810289!10058-101H4;0.879565!10418-106C4;0.659995!10492-107B6;0.0969594!10694-109G1;0.0888042!10797-110I5;0.828341!10057-101H3;0.56795!10100-102D1;0.676881!10055-101H1;0.763437!10204-103F6;0.85478!10191-103E2;0.37882!10563-108A5;0.616886
|name=PKNX1_si
|name=PKNX1_si
|tomtom_result=PBX1#MA0070.1;-2;3.61093e-06;0.0017188;0.00343311;11;AGCTTGATTGATG;TTTGATTGATGG;-!HAP4#MA0315.1;3;0.000878492;0.418162;0.417615;12;AGCTTGATTGATG;TCGCCTCTGATTGGT;-!z#MA0255.1;-3;0.00169975;0.809079;0.53868;10;AGCTTGATTGATG;TTGAGTGATT;+!onecut#MA0235.1;-3;0.00264958;1.2612;0.629774;7;AGCTTGATTGATG;TTGATTT;+!AP1#MA0099.2;-4;0.00419307;1.9959;0.721969;7;AGCTTGATTGATG;TGACTCA;+!FZF1#MA0298.1;-4;0.00455619;2.16875;0.721969;6;AGCTTGATTGATG;TGATAG;-!achi#MA0207.1;-4;0.00571998;2.72271;0.776898;6;AGCTTGATTGATG;TGACAG;+!hth#MA0227.1;-4;0.00662396;3.15301;0.78722;6;AGCTTGATTGATG;TGACAG;+!GATA3#MA0037.1;-4;0.00820448;3.90533;0.866715;6;AGCTTGATTGATG;AGATAG;+!vis#MA0252.1;-4;0.0108096;5.14536;0.89529;6;AGCTTGATTGATG;TGACAG;+!HAP5#MA0316.1;3;0.0111028;5.28495;0.89529;12;AGCTTGATTGATG;TGGGATCTGATTGGT;+!Gfi#MA0038.1;-1;0.0146755;6.98554;0.89529;10;AGCTTGATTGATG;CAGTGATTTG;-!CG11085#MA0171.1;-3;0.0161366;7.681;0.89529;7;AGCTTGATTGATG;TTAATTG;+!Fos#MA0099.1;-4;0.0165336;7.87001;0.89529;8;AGCTTGATTGATG;TGACTCAC;-!TOS8#MA0408.1;-2;0.0165336;7.87001;0.89529;8;AGCTTGATTGATG;TTTGACAG;-!CG34031#MA0444.1;-3;0.0180648;8.59882;0.89529;7;AGCTTGATTGATG;TTAATTG;+!Pax2#MA0067.1;-1;0.0192802;9.17739;0.89529;8;AGCTTGATTGATG;GCGTGACT;-!GCN4#MA0303.1;3;0.019504;9.28389;0.89529;13;AGCTTGATTGATG;TGAAGTATGACTCATCCCTTG;-!Tal1::Gata1#MA0140.1;3;0.0202186;9.62406;0.89529;13;AGCTTGATTGATG;CTGGTGGGGACAGATAAG;+!CUP9#MA0288.1;-4;0.0209491;9.97177;0.89529;9;AGCTTGATTGATG;TGACACATT;+
}}
}}

Latest revision as of 14:06, 7 September 2012

Full Name: PKNX1_si

Motif matrix
POACGT
13.7346938775510222.08163265306122723.1836734693877510.0
23.1836734693877510.9795918367346943.7346938775510221.102040816326533
32.7551020408163283.0612244897959212.2040816326530570.979591836734694
40.02.08163265306122722.2040816326530574.714285714285715
50.00.00.09.0
60.00.09.00.0
79.00.00.00.0
80.04.2857142857142840.04.714285714285715
92.2040816326530570.55102040816326561.1020408163265335.142857142857139
100.00.08.0204081632653070.979591836734694
117.3469387755102051.6530612244897950.00.0
121.1020408163265331.6530612244897950.9795918367346945.265306122448979
132.08163265306122720.04.4081632653061232.51020408163265

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PBX1#MA0070.1-23.61093e-060.00171880.0034331111AGCTTGATTGATGTTTGATTGATGG-
HAP4#MA0315.130.0008784920.4181620.41761512AGCTTGATTGATGTCGCCTCTGATTGGT-
z#MA0255.1-30.001699750.8090790.5386810AGCTTGATTGATGTTGAGTGATT+
onecut#MA0235.1-30.002649581.26120.6297747AGCTTGATTGATGTTGATTT+
AP1#MA0099.2-40.004193071.99590.7219697AGCTTGATTGATGTGACTCA+
FZF1#MA0298.1-40.004556192.168750.7219696AGCTTGATTGATGTGATAG-
achi#MA0207.1-40.005719982.722710.7768986AGCTTGATTGATGTGACAG+
hth#MA0227.1-40.006623963.153010.787226AGCTTGATTGATGTGACAG+
GATA3#MA0037.1-40.008204483.905330.8667156AGCTTGATTGATGAGATAG+
vis#MA0252.1-40.01080965.145360.895296AGCTTGATTGATGTGACAG+
HAP5#MA0316.130.01110285.284950.8952912AGCTTGATTGATGTGGGATCTGATTGGT+
Gfi#MA0038.1-10.01467556.985540.8952910AGCTTGATTGATGCAGTGATTTG-
CG11085#MA0171.1-30.01613667.6810.895297AGCTTGATTGATGTTAATTG+
Fos#MA0099.1-40.01653367.870010.895298AGCTTGATTGATGTGACTCAC-
TOS8#MA0408.1-20.01653367.870010.895298AGCTTGATTGATGTTTGACAG-
CG34031#MA0444.1-30.01806488.598820.895297AGCTTGATTGATGTTAATTG+
Pax2#MA0067.1-10.01928029.177390.895298AGCTTGATTGATGGCGTGACT-
GCN4#MA0303.130.0195049.283890.8952913AGCTTGATTGATGTGAAGTATGACTCATCCCTTG-
Tal1::Gata1#MA0140.130.02021869.624060.8952913AGCTTGATTGATGCTGGTGGGGACAGATAAG+
CUP9#MA0288.1-40.02094919.971770.895299AGCTTGATTGATGTGACACATT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:PKNX1_si&oldid=2134239"