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MacroAPE 1083:Motif CNATGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;3840;0;0!02;960;960;960;960!03;3840;0;0;0!04;0;0;0;3840!05;0;0;3840;0!06;0;0;3840;0 |macroape_1083_sample_pvalues=11376-118A8;0.213162!1...")
 
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5561!10464-106H5;0.347609!10827-111C8;0.411101!10789-110H6;0.137952!10828-111C9;0.0503568!10788-110H5;0.310459!10792-110H9;0.153617!10765-110E9;0.192128!10829-111D1;0.0397798!10830-111D2;0.22166!10831-111D3;0.326073!10832-111D4;0.171781!10833-111D5;0.161811!10764-110E8;0.173644!10770-110F5;0.372752!10399-106A3;0.155346!10400-106A4;0.34122!10405-106A9;0.378508!10834-111D6;0.267294!10835-111D7;0.237322!10836-111D8;0.309967!10837-111D9;0.24786!10699-109G6;0.337056!10802-111A1;0.338122!10796-110I4;0.100083!10010-101C1;0.0948243!10810-111A9;0.167321!10421-106C7;0.14796!10708-109H6;0.362273!12235-129G3;0.117527!12236-129G4;0.178171!12237-129G5;0.44732!10167-103B5;0.157234!10151-102I7;0.413094!10428-106D5;0.319314!10795-110I3;0.76098!10805-111A4;0.41724!10052-101G7;0.201442!10189-103D9;0.236182!10589-108D4;0.13623!10425-106D2;0.0264543!10427-106D4;0.820548!10702-109G9;0.710963!10432-106D9;0.0339535!10496-107C1;0.208184!10718-109I7;0.688089!10011-101C2;0.116216!10053-101G8;0.135334!10686-109F2;0.691829!10084-102B3;0.157474!10012-101C3;0.563798!10085-102B4;0.33769!10482-107A5;0.71251!10419-106C5;0.229356!10080-102A8;0.1453!10760-110E4;0.238427!10709-109H7;0.0301883!10710-109H8;0.0738968!10703-109H1;0.217001!10719-109I8;0.0910461!10642-109A3;0.727365!10177-103C6;0.361359!10164-103B2;0.396313!10173-103C2;0.372397!10166-103B4;0.348502!10083-102B2;0.263309!10188-103D8;0.464367!10552-107I3;0.285545!10553-107I4;0.34088!10013-101C4;0.214988!10536-107G5;0.225249!10618-108G6;0.51902!10423-106C9;0.651354!10785-110H2;0.697506!12238-129G6;0.550276!12239-129G7;0.106639!12240-129G8;0.169991!10416-106C2;0.0388251!10801-110I9;0.131721!10766-110F1;0.212642!10824-111C5;0.194895!10825-111C6;0.482138!10826-111C7;0.544824!10454-106G4;0.481612!10409-106B4;0.444306!10638-108I8;0.280083!10636-108I6;0.211024!10513-107D9;0.0332424!10420-106C6;0.056594!10082-102B1;0.392692!10014-101C5;0.433277!10070-101I7;0.338099!10452-106G2;0.205125!10453-106G3;0.792096!10449-106F8;0.531228!10042-101F6;0.509037!10069-101I6;0.583493!10193-103E4;0.332415!10631-108I1;0.511448!10438-106E6;0.158359!10488-107B2;0.137272!10196-103E7;0.139598!10071-101I8;0.194419!10071-101I8;0.598827!10041-101F5;0.513221!10451-106G1;0.171969!10450-106F9;0.436135!10604-108F1;0.204141!10605-108F2;0.367421!10606-108F3;0.215429!10603-108E9;0.438228!10497-107C2;0.315228!10448-106F7;0.0981522!10643-109A4;0.1022!10426-106D3;0.0496152!10431-106D8;0.159936!10197-103E8;0.103858!10443-106F2;0.330273!10815-111B5;0.712953!10816-111B6;0.194941!10817-111B7;0.258191!10015-101C6;0.193919!10410-106B5;0.435491!10054-101G9;0.588286!10758-110E2;0.221972!10711-109H9;0.977618!10040-101F4;0.361662!10470-106I2;0.313805!10415-106C1;0.189711!10198-103E9;0.960925!10614-108G2;0.314601!10612-108F9;0.0145381!10549-107H9;0.0555863!10615-108G3;0.173805!10487-107B1;0.239334!10433-106E1;0.776037!10688-109F4;0.580449!10444-106F3;0.139636!10444-106F3;0.641107!10485-107A8;0.59861!10413-106B8;0.285108!10175-103C4;0.518076!10161-103A8;0.450094!12131-128D7;0.371048!10624-108H3;0.360626!10712-109I1;0.911732!10205-103F7;0.514397!10206-103F8;0.125836!10207-103F9;0.214227!10050-101G5;0.0200729!10051-101G6;0.606017!10016-101C7;0.295627!10046-101G1;0.207119!10778-110G4;0.132578!10633-108I3;0.00650141!10818-111B8;0.161423!10819-111B9;0.060958!10820-111C1;0.0534154!10484-107A7;0.0706366!10808-111A7;0.085863!10169-103B7;0.111012!10153-102I9;0.363663!13425-144D5;0.311202!13433-144E4;0.120443!13437-144E8;0.199848!11904-125F5;0.194045!11905-125F6;0.495921!10039-101F3;0.869736!10791-110H8;0.33835!10017-101C8;0.0435991!10045-101F9;0.437711!10509-107D5;0.285482!10839-111E2;0.908659!10692-109F8;0.300462!10079-102A7;0.192551!10078-102A6;0.19517!10721-110A1;0.221129!10569-108B2;0.0941978!10570-108B3;0.626153!10571-108B4;0.39701!10647-109A8;0.542211!10752-110D5;0.721581!10782-110G8;0.152644!10726-110A6;0.0329177!10018-101C9;0.0496849!10086-102B5;0.742066!10182-103D2;0.902216!10165-103B3;0.389245!10499-107C4;0.391306!10408-106B3;0.299823!10019-101D1;0.249175!10068-101I5;0.261066!10075-102A3;0.110394!10077-102A5;0.176426!10727-110A7;0.182396!10775-110G1;0.660255!10412-106B7;0.258767!12231-129F8;0.791916!12232-129F9;0.272505!12233-129G1;0.274069!12234-129G2;0.135937!10414-106B9;0.421372!10170-103B8;0.351102!10183-103D3;0.330305!10150-102I6;0.3263!10174-103C3;0.246867!10155-103A2;0.391675!10038-101F2;0.362586!10838-111E1;0.423767!10759-110E3;0.439628!10514-107E1;0.173154!10465-106H6;0.451733!10691-109F7;0.172986!10843-111E6;0.500495!10844-111E7;0.109387!11747-123G1;0.0621231!11748-123G2;0.95151!11749-123G3;0.411491!11750-123G4;0.154803!11751-123G5;0.194105!11840-124H4;0.0616478!11752-123G6;0.0753669!11753-123G7;0.579635!11754-123G8;0.132103!11755-123G9;0.713284!11756-123H1;0.461631!11833-124G6;0.0999509!11760-123H5;0.196491!11836-124G9;0.174073!11758-123H3;0.437393!11835-124G8;0.045909!11762-123H7;0.0823551!11838-124H2;0.239325!11757-123H2;0.129861!11759-123H4;0.174423!11761-123H6;0.104683!11842-124H6;0.412543!11837-124H1;0.0186706!10568-108B1;0.045101!13230-141I8;0.100662!13231-141I9;0.256578!10696-109G3;0.288089!10493-107B7;0.110526!10494-107B8;0.612949!10850-111F4;0.404327!10851-111F5;0.286394!10852-111F6;0.131601!10853-111F7;0.214591!10854-111F8;0.188576!10855-111F9;0.441402!10856-111G1;0.357811!10847-111F1;0.0454592!10846-111E9;0.475463!10848-111F2;0.23884!10845-111E8;0.149289!10857-111G2;0.503388!10858-111G3;0.251171!10156-103A3;0.0633233!11901-125F2;0.273877!11902-125F3;0.758109!11903-125F4;0.870464!10689-109F5;0.860724!10648-109A9;0.608774!10784-110H1;0.10003!10744-110C6;0.185771!10772-110F7;0.317443!10474-106I6;0.227185!10600-108E6;0.682744!10684-109E9;0.502963!12226-129F3;0.386162!12227-129F4;0.497969!10508-107D4;0.686809!10539-107G8;0.498315!10607-108F4;0.873823!10555-107I6;0.227033!10774-110F9;0.529465!10637-108I7;0.146785!10663-109C6;0.815182!10728-110A8;0.333698!10729-110A9;0.909784!10430-106D7;0.177394!10730-110B1;0.416821!10813-111B3;0.201426!10812-111B2;0.345888!10037-101F1;0.7949!10172-103C1;0.348587!10163-103B1;0.321175!10076-102A4;0.215016!10073-102A1;0.363191!10036-101E9;0.624377!10195-103E6;0.376067!10277-104E7;0.323018!10434-106E2;0.456838!10550-107I1;0.1865!10545-107H5;0.146005!10544-107H4;0.182951!10704-109H2;0.172649!10510-107D6;0.282366!10558-107I9;0.514296!10020-101D2;0.768058!10732-110B3;0.16283!10049-101G4;0.620488!10698-109G5;0.944352!10437-106E5;0.952664!10417-106C3;0.198793!10035-101E8;0.317082!10171-103B9;0.323873!10157-103A4;0.393718!10034-101E7;0.214924!10072-101I9;0.339332!10199-103F1;0.611293!10200-103F2;0.470316!10697-109G4;0.338489!10723-110A3;0.812649!10179-103C8;0.349229!10160-103A7;0.118069!10180-103C9;0.107678!10162-103A9;0.0746517!10021-101D3;0.0883074!10840-111E3;0.0962955!10706-109H4;0.56869!10033-101E6;0.682345!10032-101E5;0.357496!10490-107B4;0.379!10439-106E7;0.13364!10022-101D4;0.19015!10176-103C5;0.228342!10469-106I1;0.359398!10067-101I4;0.470985!10411-106B6;0.418471!10471-106I3;0.539976!10030-101E3;0.739507!10475-106I7;0.243246!10787-110H4;0.20897!10477-106I9;0.0536541!10695-109G2;0.826674!11771-123I7;0.268561!11772-123I8;0.286967!11773-123I9;0.496033!10093-102C3;0.237624!10442-106F1;0.45203!10442-106F1;0.389865!10201-103F3;0.410835!10639-108I9;0.230305!11843-124H7;0.467664!11841-124H5;0.479877!10693-109F9;0.252375!10436-106E4;0.131184!10483-107A6;0.0938805!10282-104F3;0.0578165!10023-101D5;0.391512!10066-101I3;0.393273!10065-101I2;0.38513!10800-110I8;0.406066!10610-108F7;0.101795!10841-111E4;0.218197!10541-107H1;0.0764861!10842-111E5;0.209801!10562-108A4;0.51647!10024-101D6;0.324582!10064-101I1;0.467702!10609-108F6;0.671477!10048-101G3;0.0985105!10781-110G7;0.14714!10181-103D1;0.331035!10159-103A6;0.344627!10056-101H2;0.348462!10737-110B8;0.486849!10025-101D7;0.0911797!10044-101F8;0.153015!10424-106D1;0.187876!10463-106H4;0.536345!10616-108G4;0.407392!10486-107A9;0.337061!10062-101H8;0.269977!10202-103F4;0.293345!10158-103A5;0.424028!10441-106E9;0.377212!10031-101E4;0.218663!10063-101H9;0.429526!10063-101H9;0.618438!11763-123H8;0.340416!11765-123I1;0.435501!11768-123I4;0.238693!10807-111A6;0.26221!10790-110H7;0.202428!10798-110I6;0.227251!10786-110H3;0.0466678!10591-108D6;0.219116!10593-108D8;0.317528!10590-108D5;0.794518!10026-101D8;0.279723!10096-102C6;0.545637!10168-103B6;0.32787!10154-103A1;0.455645!10209-103G2;0.375774!10061-101H7;0.574032!10027-101D9;0.431166!10043-101F7;0.839539!10783-110G9;0.11431!10028-101E1;0.376901!10060-101H6;0.176591!10203-103F5;0.321087!10059-101H5;0.515753!10047-101G2;0.438183!10029-101E2;0.520838!10058-101H4;0.56784!10418-106C4;0.294556!10492-107B6;0.131037!10694-109G1;0.204558!10797-110I5;0.321672!10057-101H3;0.0764937!10100-102D1;0.28504!10055-101H1;0.134372!10204-103F6;0.265053!10191-103E2;0.0706198!10563-108A5;0.308921
|name=motif_CNATGG
|name=motif_CNATGG
|tomtom_result=SOX9#MA0077.1;3;0.00247193;1.17664;1;6;CAATGG;GAACAATGG;+!YY1#MA0095.1;-1;0.00291016;1.38524;1;5;CAATGG;GATGGC;-!ROX1#MA0371.1;5;0.0057044;2.71529;1;6;CAATGG;GAGAACAATGGA;-!D#MA00445.1;4;0.00582316;2.77182;1;6;CAATGG;AGAACAATGGA;-!REST#MA0138.2;7;0.0118735;5.65177;1;6;CAATGG;TTCAGCACCATGGACAGCGCC;+!REST#MA0138.2;6;0.0118892;5.65927;1;6;CAATGG;TCAGCACCATGGACAGCGC;-!Gata1#MA0035.1;0;0.0158882;7.56277;1;6;CAATGG;GGATGG;+!NRG1#MA0347.1;2;0.0164397;7.82531;1;6;CAATGG;TGCGATGGACCCTGATCTAG;-!Sox17#MA0078.1;2;0.0176136;8.38407;1;6;CAATGG;GACAATGAG;-!Sox2#MA0143.1;9;0.0184132;8.76466;1;6;CAATGG;TTTGCATAACAAAGG;-
}}
}}

Latest revision as of 14:17, 7 September 2012

Full Name: motif_CNATGG

Motif matrix
POACGT
010384000
02960960960960
033840000
040003840
050038400
060038400

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SOX9#MA0077.130.002471931.1766416CAATGGGAACAATGG+
YY1#MA0095.1-10.002910161.3852415CAATGGGATGGC-
ROX1#MA0371.150.00570442.7152916CAATGGGAGAACAATGGA-
D#MA00445.140.005823162.7718216CAATGGAGAACAATGGA-
REST#MA0138.270.01187355.6517716CAATGGTTCAGCACCATGGACAGCGCC+
REST#MA0138.260.01188925.6592716CAATGGTCAGCACCATGGACAGCGC-
Gata1#MA0035.100.01588827.5627716CAATGGGGATGG+
NRG1#MA0347.120.01643977.8253116CAATGGTGCGATGGACCCTGATCTAG-
Sox17#MA0078.120.01761368.3840716CAATGGGACAATGAG-
Sox2#MA0143.190.01841328.7646616CAATGGTTTGCATAACAAAGG-
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