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MacroAPE 1083:SGAGMKTAK,motif947: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;12.195;529.805;632.785;180.215!2;1.355;1.355;1341.45;10.84!3;841.455;222.22;289.97;1.355!4;115.175;299.455;682.92;257.45!5;457.99;584.005;31...")
 
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206!10789-110H6;0.480698!10828-111C9;0.869865!10788-110H5;0.798094!10792-110H9;0.433202!10765-110E9;0.557895!10829-111D1;0.621911!10830-111D2;0.449391!10831-111D3;0.668601!10832-111D4;0.991504!10833-111D5;0.703906!10764-110E8;0.555243!10770-110F5;0.705494!10399-106A3;0.155609!10400-106A4;0.454582!10405-106A9;0.514202!10834-111D6;0.417155!10835-111D7;0.428708!10836-111D8;0.979777!10837-111D9;0.481765!10699-109G6;0.602619!10802-111A1;0.885022!10796-110I4;0.623989!10010-101C1;0.994902!10810-111A9;0.461787!10421-106C7;0.702269!10708-109H6;0.36364!12235-129G3;0.819681!12236-129G4;0.570585!12237-129G5;0.70174!10167-103B5;0.591204!10151-102I7;0.67735!10428-106D5;0.496501!10795-110I3;0.864479!10805-111A4;0.20507!10052-101G7;0.711681!10189-103D9;0.48738!10589-108D4;0.0981214!10425-106D2;0.658341!10427-106D4;0.882273!10702-109G9;0.462106!10432-106D9;0.649175!10496-107C1;0.684736!10718-109I7;0.342752!10011-101C2;0.601848!10053-101G8;0.190157!10686-109F2;0.869196!10084-102B3;0.782418!10012-101C3;0.689117!10085-102B4;0.60084!10482-107A5;0.164145!10419-106C5;0.673219!10080-102A8;0.662292!10760-110E4;0.251606!10709-109H7;0.428759!10710-109H8;0.759245!10703-109H1;0.819157!10719-109I8;0.644365!10642-109A3;0.782032!10177-103C6;0.188819!10164-103B2;0.597974!10173-103C2;0.613462!10166-103B4;0.566852!10083-102B2;0.415623!10188-103D8;0.505067!10552-107I3;0.402906!10553-107I4;0.602859!10013-101C4;0.423405!10536-107G5;0.191206!10618-108G6;0.333291!10423-106C9;0.603943!10785-110H2;0.302005!12238-129G6;0.661!12239-129G7;0.564692!12240-129G8;0.442798!10416-106C2;0.124758!10801-110I9;0.791252!10766-110F1;0.911221!10824-111C5;0.716259!10825-111C6;0.576327!10826-111C7;0.798898!10454-106G4;0.639315!10409-106B4;0.486358!10638-108I8;0.769367!10636-108I6;0.285049!10513-107D9;0.849195!10420-106C6;0.792501!10082-102B1;0.406697!10014-101C5;0.0945493!10070-101I7;0.134499!10452-106G2;0.132304!10453-106G3;0.859893!10449-106F8;0.751384!10042-101F6;0.7901!10069-101I6;0.349058!10193-103E4;0.852461!10631-108I1;0.441207!10438-106E6;0.518485!10488-107B2;0.842733!10196-103E7;0.461229!10071-101I8;0.161079!10071-101I8;0.242237!10041-101F5;0.155162!10451-106G1;0.332927!10450-106F9;0.522213!10604-108F1;0.36379!10605-108F2;0.108028!10606-108F3;0.706226!10603-108E9;0.48088!10497-107C2;0.794713!10448-106F7;0.254613!10643-109A4;0.833759!10426-106D3;0.776298!10431-106D8;0.509532!10197-103E8;0.399135!10443-106F2;0.5258!10815-111B5;0.297802!10816-111B6;0.263207!10817-111B7;0.360931!10015-101C6;0.238278!10410-106B5;0.316625!10054-101G9;0.690711!10758-110E2;0.331529!10711-109H9;0.370513!10040-101F4;0.607697!10470-106I2;0.703197!10415-106C1;0.604812!10198-103E9;0.330866!10614-108G2;0.191066!10612-108F9;0.406846!10549-107H9;0.335162!10615-108G3;0.698571!10487-107B1;0.47922!10433-106E1;0.31849!10688-109F4;0.718692!10444-106F3;0.341059!10444-106F3;0.760647!10485-107A8;0.736612!10413-106B8;0.956648!10175-103C4;0.549437!10161-103A8;0.312183!12131-128D7;0.291713!10624-108H3;0.78714!10712-109I1;0.139486!10205-103F7;0.649046!10206-103F8;0.649314!10207-103F9;0.613494!10050-101G5;0.232222!10051-101G6;0.539962!10016-101C7;0.696842!10046-101G1;0.558914!10778-110G4;0.425118!10633-108I3;0.855803!10818-111B8;0.322417!10819-111B9;0.330461!10820-111C1;0.327111!10484-107A7;0.3629!10808-111A7;0.796884!10169-103B7;0.787814!10153-102I9;0.42421!13425-144D5;0.40382!13433-144E4;0.286985!13437-144E8;0.304764!11904-125F5;0.421966!11905-125F6;0.694656!10039-101F3;0.3805!10791-110H8;0.625224!10017-101C8;0.545987!10045-101F9;0.984644!10509-107D5;0.487898!10839-111E2;0.668007!10692-109F8;0.191572!10079-102A7;0.791129!10078-102A6;0.839792!10721-110A1;0.616808!10569-108B2;0.666386!10570-108B3;0.625292!10571-108B4;0.76572!10647-109A8;0.649473!10752-110D5;0.275105!10782-110G8;0.820227!10726-110A6;0.223009!10018-101C9;0.305874!10086-102B5;0.987314!10182-103D2;0.678327!10165-103B3;0.356146!10499-107C4;0.448677!10408-106B3;0.778548!10019-101D1;0.42227!10068-101I5;0.480923!10075-102A3;0.541982!10077-102A5;0.588131!10727-110A7;0.32163!10775-110G1;0.528409!10412-106B7;0.336686!12231-129F8;0.409761!12232-129F9;0.626173!12233-129G1;0.572792!12234-129G2;0.768194!10414-106B9;0.908667!10170-103B8;0.636706!10183-103D3;0.6492!10150-102I6;0.730993!10174-103C3;0.57736!10155-103A2;0.254768!10038-101F2;0.414872!10838-111E1;0.485038!10759-110E3;0.0271704!10514-107E1;0.709333!10465-106H6;0.695995!10691-109F7;0.789768!10843-111E6;0.399015!10844-111E7;0.502922!11747-123G1;0.1205!11748-123G2;0.27505!11749-123G3;0.297203!11750-123G4;0.230331!11751-123G5;0.31937!11840-124H4;0.231722!11752-123G6;0.56761!11753-123G7;0.299046!11754-123G8;0.736024!11755-123G9;0.393949!11756-123H1;0.847135!11833-124G6;0.741639!11760-123H5;0.69361!11836-124G9;0.858112!11758-123H3;0.527352!11835-124G8;0.751885!11762-123H7;0.799133!11838-124H2;0.877457!11757-123H2;0.979932!11759-123H4;0.972868!11761-123H6;0.842789!11842-124H6;0.561506!11837-124H1;0.848724!10568-108B1;0.757884!13230-141I8;0.753295!13231-141I9;0.962934!10696-109G3;0.980352!10493-107B7;0.562832!10494-107B8;0.995889!10850-111F4;0.847094!10851-111F5;0.899668!10852-111F6;0.726744!10853-111F7;0.805464!10854-111F8;0.296904!10855-111F9;0.802838!10856-111G1;0.868586!10847-111F1;0.774335!10846-111E9;0.854385!10848-111F2;0.402477!10845-111E8;0.834667!10857-111G2;0.61936!10858-111G3;0.331315!10156-103A3;0.0699809!11901-125F2;0.572024!11902-125F3;0.585681!11903-125F4;0.892573!10689-109F5;0.861512!10648-109A9;0.16228!10784-110H1;0.25933!10744-110C6;0.951169!10772-110F7;0.493257!10474-106I6;0.387091!10600-108E6;0.301351!10684-109E9;0.896797!12226-129F3;0.846418!12227-129F4;0.320075!10508-107D4;0.825266!10539-107G8;0.0845504!10607-108F4;0.14171!10555-107I6;0.825756!10774-110F9;0.0868738!10637-108I7;0.531833!10663-109C6;0.855616!10728-110A8;0.872104!10729-110A9;0.578287!10430-106D7;0.968985!10730-110B1;0.825721!10813-111B3;0.708201!10812-111B2;0.637026!10037-101F1;0.21697!10172-103C1;0.651194!10163-103B1;0.60926!10076-102A4;0.560941!10073-102A1;0.586461!10036-101E9;0.096325!10195-103E6;0.633275!10277-104E7;0.543989!10434-106E2;0.237372!10550-107I1;0.206621!10545-107H5;0.313921!10544-107H4;0.369095!10704-109H2;0.720539!10510-107D6;0.994928!10558-107I9;0.444437!10020-101D2;0.880225!10732-110B3;0.249664!10049-101G4;0.747785!10698-109G5;0.71823!10437-106E5;0.890348!10417-106C3;0.349243!10035-101E8;0.868839!10171-103B9;0.640672!10157-103A4;0.563414!10034-101E7;0.658898!10072-101I9;0.633467!10199-103F1;0.054784!10200-103F2;0.635262!10697-109G4;0.556973!10723-110A3;0.838712!10179-103C8;0.056513!10160-103A7;0.152881!10180-103C9;0.195164!10162-103A9;0.976835!10021-101D3;0.77054!10840-111E3;0.914374!10706-109H4;0.903027!10033-101E6;0.834945!10032-101E5;0.605838!10490-107B4;0.691871!10439-106E7;0.767784!10022-101D4;0.686263!10176-103C5;0.175331!10469-106I1;0.565881!10067-101I4;0.954614!10411-106B6;0.0502347!10471-106I3;0.244101!10030-101E3;0.398347!10475-106I7;0.238196!10787-110H4;0.147591!10477-106I9;0.742326!10695-109G2;0.363532!11771-123I7;0.2831!11772-123I8;0.820426!11773-123I9;0.977002!10093-102C3;0.574946!10442-106F1;0.408112!10442-106F1;0.307095!10201-103F3;0.33507!10639-108I9;0.363364!11843-124H7;0.728446!11841-124H5;0.495008!10693-109F9;0.672569!10436-106E4;0.986332!10483-107A6;0.916204!10282-104F3;0.676257!10023-101D5;0.908731!10066-101I3;0.773423!10065-101I2;0.863197!10800-110I8;0.870445!10610-108F7;0.273157!10841-111E4;0.960086!10541-107H1;0.486141!10842-111E5;0.581962!10562-108A4;0.0636054!10024-101D6;0.618052!10064-101I1;0.118433!10609-108F6;0.208331!10048-101G3;0.54206!10781-110G7;0.217455!10181-103D1;0.628799!10159-103A6;0.421218!10056-101H2;0.438097!10737-110B8;0.303661!10025-101D7;0.797807!10044-101F8;0.685673!10424-106D1;0.708359!10463-106H4;0.68755!10616-108G4;0.307324!10486-107A9;0.0878603!10062-101H8;0.161074!10202-103F4;0.0404367!10158-103A5;0.956422!10441-106E9;0.253122!10031-101E4;0.141868!10063-101H9;0.621344!10063-101H9;0.164929!11763-123H8;0.417595!11765-123I1;0.397582!11768-123I4;0.940004!10807-111A6;0.440271!10790-110H7;0.171816!10798-110I6;0.058233!10786-110H3;0.0414696!10591-108D6;0.308183!10593-108D8;0.135374!10590-108D5;0.330683!10026-101D8;0.8447!10096-102C6;0.206401!10168-103B6;0.349663!10154-103A1;0.443303!10209-103G2;0.449674!10061-101H7;0.87115!10027-101D9;0.485242!10043-101F7;0.597347!10783-110G9;0.576918!10028-101E1;0.929709!10060-101H6;0.662704!10203-103F5;0.50442!10059-101H5;0.974405!10047-101G2;0.919594!10029-101E2;0.958266!10058-101H4;0.662135!10418-106C4;0.739903!10492-107B6;0.757984!10694-109G1;0.527878!10797-110I5;0.223433!10057-101H3;0.608507!10100-102D1;0.729413!10055-101H1;0.13955!10204-103F6;0.1393!10191-103E2;0.0352515!10563-108A5;0.490233
|name=SGAGMKTAK,motif947,CNhs10647,T:1355.0(37.24%),B:18830.5(28.86%),P:1e-27
|name=SGAGMKTAK,motif947,CNhs10647,T:1355.0(37.24%),B:18830.5(28.86%),P:1e-27
|tomtom_result=GSM1#MA0308.1;8;0.00445262;2.11945;1;9;GGAGCGTAT;TATACTCCGGAGTTTTTTAAT;-!Pax4#MA0068.1;9;0.00497098;2.36619;1;9;GGAGCGTAT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!GAL4#MA0299.1;4;0.00623519;2.96795;1;9;GGAGCGTAT;CGGGGAACAGTACTC;+!FOXC1#MA0032.1;0;0.00886172;4.21818;1;8;GGAGCGTAT;GGTAAGTA;+!ARO80#MA0273.1;10;0.00986654;4.69647;1;9;GGAGCGTAT;ACATACTTGCCGAGAATTATC;-!YRR1#MA0439.1;2;0.0114768;5.46295;1;9;GGAGCGTAT;GCGGAGATAAG;-!HAP5#MA0316.1;2;0.0118184;5.62555;1;9;GGAGCGTAT;TGGGATCTGATTGGT;+!STB5#MA0392.1;0;0.0145749;6.93764;1;8;GGAGCGTAT;CGGTGTTA;+!CRZ1#MA0285.1;0;0.0203056;9.66547;1;9;GGAGCGTAT;GTGGCTTAG;-
}}
}}

Latest revision as of 14:18, 7 September 2012

Full Name: SGAGMKTAK,motif947,CNhs10647,T:1355.0(37.24%),B:18830.5(28.86%),P:1e-27

Motif matrix
POACGT
112.195529.805632.785180.215
21.3551.3551341.4510.84
3841.455222.22289.971.355
4115.175299.455682.92257.45
5457.99584.005311.651.355
69.485143.63604.33596.2
720.32518.97388.885926.82
8720.86319.7814.905299.455
91.355279.13439.02636.85

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GSM1#MA0308.180.004452622.1194519GGAGCGTATTATACTCCGGAGTTTTTTAAT-
Pax4#MA0068.190.004970982.3661919GGAGCGTATGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
GAL4#MA0299.140.006235192.9679519GGAGCGTATCGGGGAACAGTACTC+
FOXC1#MA0032.100.008861724.2181818GGAGCGTATGGTAAGTA+
ARO80#MA0273.1100.009866544.6964719GGAGCGTATACATACTTGCCGAGAATTATC-
YRR1#MA0439.120.01147685.4629519GGAGCGTATGCGGAGATAAG-
HAP5#MA0316.120.01181845.6255519GGAGCGTATTGGGATCTGATTGGT+
STB5#MA0392.100.01457496.9376418GGAGCGTATCGGTGTTA+
CRZ1#MA0285.100.02030569.6654719GGAGCGTATGTGGCTTAG-
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