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MacroAPE 1083:10-GTAACHDC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.108;209.412;809.948;87.532!2;1.108;1.108;1.108;1104.676!3;679.204;1.108;95.288;332.4!4;766.736;1.108;339.048;1.108!5;1.108;1104.676;1.108;...")
 
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B7;0.460721!10494-107B8;0.506588!10850-111F4;0.255383!10851-111F5;0.602649!10852-111F6;0.166038!10853-111F7;0.836269!10854-111F8;0.321671!10855-111F9;0.868609!10856-111G1;0.357656!10847-111F1;0.256671!10846-111E9;0.738081!10848-111F2;0.12851!10845-111E8;0.155841!10857-111G2;0.526657!10858-111G3;0.748185!10156-103A3;0.251564!11901-125F2;0.592129!11902-125F3;0.144616!11903-125F4;0.37554!10689-109F5;0.271117!10648-109A9;0.868589!10784-110H1;0.101344!10744-110C6;0.383163!10772-110F7;0.203185!10474-106I6;0.76805!10600-108E6;0.355507!10684-109E9;0.640641!12226-129F3;0.00337383!12227-129F4;0.37014!10508-107D4;0.600062!10539-107G8;0.336402!10607-108F4;0.968045!10555-107I6;0.88357!10774-110F9;0.512881!10637-108I7;0.465704!10663-109C6;0.826146!10728-110A8;0.58804!10729-110A9;0.540034!10430-106D7;0.661987!10730-110B1;0.937333!10813-111B3;0.986199!10812-111B2;0.653138!10037-101F1;0.744136!10172-103C1;0.714062!10163-103B1;0.752496!10076-102A4;0.512811!10073-102A1;0.746826!10036-101E9;0.698425!10195-103E6;0.825941!10277-104E7;0.73256!10434-106E2;0.72342!10550-107I1;0.916076!10545-107H5;0.75263!10544-107H4;0.395871!10704-109H2;0.838095!10510-107D6;0.591501!10558-107I9;0.276591!10020-101D2;0.464992!10732-110B3;0.495513!10049-101G4;0.10094!10698-109G5;0.882831!10437-106E5;0.772977!10417-106C3;0.670976!10035-101E8;0.527905!10171-103B9;0.750763!10157-103A4;0.71959!10034-101E7;0.547976!10072-101I9;0.839702!10199-103F1;0.522984!10200-103F2;0.682086!10697-109G4;0.739696!10723-110A3;0.231788!10179-103C8;0.745095!10160-103A7;0.754526!10180-103C9;0.415223!10162-103A9;0.196138!10021-101D3;0.147804!10840-111E3;0.76199!10706-109H4;0.00927725!10033-101E6;0.302854!10032-101E5;0.788349!10490-107B4;0.81366!10439-106E7;0.919218!10022-101D4;0.331232!10176-103C5;0.440513!10469-106I1;0.732001!10067-101I4;0.769114!10411-106B6;0.515215!10471-106I3;0.766386!10030-101E3;0.412994!10475-106I7;0.567946!10787-110H4;0.766724!10477-106I9;0.377597!10695-109G2;0.802969!11771-123I7;0.515487!11772-123I8;0.810354!11773-123I9;0.772689!10093-102C3;0.996874!10442-106F1;0.526965!10442-106F1;0.363722!10201-103F3;0.484155!10639-108I9;0.255508!11843-124H7;0.590607!11841-124H5;0.0449011!10693-109F9;0.0791524!10436-106E4;0.491246!10483-107A6;0.164831!10282-104F3;0.764377!10023-101D5;0.903142!10066-101I3;0.84408!10065-101I2;0.722829!10800-110I8;0.798854!10610-108F7;0.603068!10841-111E4;0.719901!10541-107H1;0.400597!10842-111E5;0.762232!10562-108A4;0.505582!10024-101D6;0.256764!10064-101I1;0.806432!10609-108F6;0.791832!10048-101G3;0.507273!10781-110G7;0.66526!10181-103D1;0.910977!10159-103A6;0.753543!10056-101H2;0.411323!10737-110B8;0.892856!10025-101D7;0.895489!10044-101F8;0.651425!10424-106D1;0.715237!10463-106H4;0.0110695!10616-108G4;0.734753!10486-107A9;0.740755!10062-101H8;0.826665!10202-103F4;0.73434!10158-103A5;0.450207!10441-106E9;0.533469!10031-101E4;0.739682!10063-101H9;0.771479!10063-101H9;0.672871!11763-123H8;0.517086!11765-123I1;0.98097!11768-123I4;0.904281!10807-111A6;0.779693!10790-110H7;0.366814!10798-110I6;0.255932!10786-110H3;0.893664!10591-108D6;0.289514!10593-108D8;0.851169!10590-108D5;0.238828!10026-101D8;0.714733!10096-102C6;0.0200413!10168-103B6;0.0121896!10154-103A1;0.7327!10209-103G2;0.530172!10061-101H7;0.576106!10027-101D9;0.384626!10043-101F7;0.0375305!10783-110G9;0.0324276!10028-101E1;0.205525!10060-101H6;0.311202!10203-103F5;0.452982!10059-101H5;0.669469!10047-101G2;0.73226!10029-101E2;0.212533!10058-101H4;0.319352!10418-106C4;0.741963!10492-107B6;0.420057!10694-109G1;0.542448!10797-110I5;0.375176!10057-101H3;0.00907594!10100-102D1;0.996682!10055-101H1;0.379552!10204-103F6;0.674198!10191-103E2;0.70302!10563-108A5;0.529483
|name=10-GTAACHDC,CNhs12354,BestGuess:OVOL1_f1_HM09(0.671505012970234),T:1108.0(36.13%),B:12113.6(27.10%),P:1e-27
|name=10-GTAACHDC,CNhs12354,BestGuess:OVOL1_f1_HM09(0.671505012970234),T:1108.0(36.13%),B:12113.6(27.10%),P:1e-27
|tomtom_result=ovo#MA0126.1;1;0.00064837;0.308624;0.215898;8;GTAACTGC;AGTAACAGT;+!prd#MA0239.1;1;0.00064837;0.308624;0.215898;8;GTAACTGC;AGTAACAGT;+!Spz1#MA0111.1;3;0.00068035;0.323846;0.215898;8;GTAACTGC;AGGGTAACAGC;+!NFIL3#MA0025.1;4;0.0073635;3.50503;1;7;GTAACTGC;TTATGTAACGT;+!RUNX1#MA0002.1;-1;0.0138833;6.60844;1;7;GTAACTGC;TAACCACAATA;-!REB1#MA0363.1;4;0.0152823;7.27439;1;5;GTAACTGC;CCGGGTAAC;-!HLF#MA0043.1;6;0.0177292;8.4391;1;6;GTAACTGC;TATTACGTAACC;-!run::Bgb#MA0242.1;-1;0.0195525;9.30698;1;7;GTAACTGC;TAACCGCAA;+
}}
}}

Latest revision as of 14:22, 7 September 2012

Full Name: 10-GTAACHDC,CNhs12354,BestGuess:OVOL1_f1_HM09(0.671505012970234),T:1108.0(36.13%),B:12113.6(27.10%),P:1e-27

Motif matrix
POACGT
11.108209.412809.94887.532
21.1081.1081.1081104.676
3679.2041.10895.288332.4
4766.7361.108339.0481.108
51.1081104.6761.1081.108
6300.268373.3961.108434.336
7340.1561.108445.416321.32
81.108717.984319.10469.804

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ovo#MA0126.110.000648370.3086240.2158988GTAACTGCAGTAACAGT+
prd#MA0239.110.000648370.3086240.2158988GTAACTGCAGTAACAGT+
Spz1#MA0111.130.000680350.3238460.2158988GTAACTGCAGGGTAACAGC+
NFIL3#MA0025.140.00736353.5050317GTAACTGCTTATGTAACGT+
RUNX1#MA0002.1-10.01388336.6084417GTAACTGCTAACCACAATA-
REB1#MA0363.140.01528237.2743915GTAACTGCCCGGGTAAC-
HLF#MA0043.160.01772928.439116GTAACTGCTATTACGTAACC-
run::Bgb#MA0242.1-10.01955259.3069817GTAACTGCTAACCGCAA+