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MacroAPE 1083:3-CGCTATTTAAAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;61.815;713.25;102.708;73.227!2;102.708;65.619;578.208;204.465!3;36.138;818.811;95.1;0.951!4;36.138;122.679;102.708;689.475!5;698.985;97.953;...")
 
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8;0.17707!10597-108E3;0.138432!10717-109I6;0.101781!10455-106G5;0.904269!10534-107G3;0.730436!10429-106D6;0.298838!10464-106H5;0.409702!10827-111C8;0.447012!10789-110H6;0.81556!10828-111C9;0.974032!10788-110H5;0.376921!10792-110H9;0.985131!10765-110E9;0.569451!10829-111D1;0.500652!10830-111D2;0.15581!10831-111D3;0.812377!10832-111D4;0.255983!10833-111D5;0.86086!10764-110E8;0.844201!10770-110F5;0.606454!10399-106A3;0.464479!10400-106A4;0.421179!10405-106A9;0.293307!10834-111D6;0.680966!10835-111D7;0.311931!10836-111D8;0.977049!10837-111D9;0.981716!10699-109G6;0.447113!10802-111A1;0.808969!10796-110I4;0.783755!10010-101C1;0.341574!10810-111A9;0.655421!10421-106C7;0.456496!10708-109H6;0.279717!12235-129G3;0.952151!12236-129G4;0.421111!12237-129G5;0.361592!10167-103B5;0.295299!10151-102I7;0.156365!10428-106D5;0.156443!10795-110I3;0.035226!10805-111A4;0.955061!10052-101G7;0.72162!10189-103D9;0.800192!10589-108D4;0.314251!10425-106D2;0.472876!10427-106D4;0.285026!10702-109G9;0.459824!10432-106D9;0.765473!10496-107C1;0.574865!10718-109I7;0.321098!10011-101C2;0.771051!10053-101G8;0.928827!10686-109F2;0.560921!10084-102B3;0.111067!10012-101C3;0.341773!10085-102B4;0.196231!10482-107A5;0.73608!10419-106C5;0.626938!10080-102A8;0.356538!10760-110E4;0.395284!10709-109H7;0.610077!10710-109H8;0.328266!10703-109H1;0.73285!10719-109I8;0.836924!10642-109A3;0.117981!10177-103C6;0.232537!10164-103B2;0.300202!10173-103C2;0.200965!10166-103B4;0.30803!10083-102B2;0.502299!10188-103D8;0.250574!10552-107I3;0.173856!10553-107I4;0.262655!10013-101C4;0.698794!10536-107G5;0.933277!10618-108G6;0.437155!10423-106C9;0.985825!10785-110H2;0.469996!12238-129G6;0.245881!12239-129G7;0.134811!12240-129G8;0.733313!10416-106C2;0.98665!10801-110I9;0.769099!10766-110F1;0.433747!10824-111C5;0.554618!10825-111C6;0.662425!10826-111C7;0.894041!10454-106G4;0.977939!10409-106B4;0.69991!10638-108I8;0.306122!10636-108I6;0.786093!10513-107D9;0.99882!10420-106C6;0.873121!10082-102B1;0.32785!10014-101C5;0.892654!10070-101I7;0.73208!10452-106G2;0.692634!10453-106G3;0.0479369!10449-106F8;0.251728!10042-101F6;0.294745!10069-101I6;0.376665!10193-103E4;0.112372!10631-108I1;0.343612!10438-106E6;0.435885!10488-107B2;0.768157!10196-103E7;0.647104!10071-101I8;0.487049!10071-101I8;0.44776!10041-101F5;0.66286!10451-106G1;0.801397!10450-106F9;0.444814!10604-108F1;0.48481!10605-108F2;0.63201!10606-108F3;0.594264!10603-108E9;0.626286!10497-107C2;0.297744!10448-106F7;0.0710491!10643-109A4;0.533726!10426-106D3;0.101018!10431-106D8;0.401145!10197-103E8;0.240313!10443-106F2;0.624686!10815-111B5;0.214045!10816-111B6;0.277131!10817-111B7;0.174814!10015-101C6;0.509701!10410-106B5;0.146019!10054-101G9;0.686729!10758-110E2;0.617371!10711-109H9;0.616266!10040-101F4;0.272451!10470-106I2;0.109902!10415-106C1;0.292346!10198-103E9;0.324249!10614-108G2;0.814184!10612-108F9;0.902906!10549-107H9;0.357158!10615-108G3;0.583624!10487-107B1;0.0586865!10433-106E1;0.436713!10688-109F4;0.587702!10444-106F3;0.273623!10444-106F3;0.999615!10485-107A8;0.91472!10413-106B8;0.356828!10175-103C4;0.883615!10161-103A8;0.348054!12131-128D7;0.270828!10624-108H3;0.738816!10712-109I1;0.0452845!10205-103F7;0.923768!10206-103F8;0.974209!10207-103F9;0.41227!10050-101G5;0.919663!10051-101G6;0.681192!10016-101C7;0.374469!10046-101G1;0.348562!10778-110G4;0.391176!10633-108I3;0.737119!10818-111B8;0.0383747!10819-111B9;0.662473!10820-111C1;0.734942!10484-107A7;0.676055!10808-111A7;0.881496!10169-103B7;0.744845!10153-102I9;0.27221!13425-144D5;0.267905!13433-144E4;0.029613!13437-144E8;0.0275549!11904-125F5;0.0901206!11905-125F6;0.687123!10039-101F3;0.824058!10791-110H8;0.13024!10017-101C8;0.0580629!10045-101F9;0.290055!10509-107D5;0.142272!10839-111E2;0.484416!10692-109F8;0.216556!10079-102A7;0.710014!10078-102A6;0.702273!10721-110A1;0.413896!10569-108B2;0.737194!10570-108B3;0.00261383!10571-108B4;0.014023!10647-109A8;0.22813!10752-110D5;0.132341!10782-110G8;0.884752!10726-110A6;0.31615!10018-101C9;0.130035!10086-102B5;0.126356!10182-103D2;0.0286873!10165-103B3;0.395922!10499-107C4;0.174883!10408-106B3;0.526448!10019-101D1;0.683644!10068-101I5;0.37813!10075-102A3;0.47221!10077-102A5;0.908212!10727-110A7;0.957123!10775-110G1;0.0978756!10412-106B7;0.855587!12231-129F8;0.913196!12232-129F9;0.845639!12233-129G1;0.697476!12234-129G2;0.283674!10414-106B9;0.156563!10170-103B8;0.251684!10183-103D3;0.134499!10150-102I6;0.185368!10174-103C3;0.26232!10155-103A2;0.0653212!10038-101F2;0.309151!10838-111E1;0.257937!10759-110E3;0.183897!10514-107E1;0.429363!10465-106H6;0.548844!10691-109F7;0.193683!10843-111E6;0.951944!10844-111E7;0.832135!11747-123G1;0.493041!11748-123G2;0.0748091!11749-123G3;0.519873!11750-123G4;0.760434!11751-123G5;0.968456!11840-124H4;0.338591!11752-123G6;0.616874!11753-123G7;0.999253!11754-123G8;0.702039!11755-123G9;0.00576439!11756-123H1;0.0414512!11833-124G6;0.0788482!11760-123H5;0.73956!11836-124G9;0.0303883!11758-123H3;0.0890978!11835-124G8;0.608698!11762-123H7;0.371028!11838-124H2;0.562415!11757-123H2;0.860626!11759-123H4;0.0770249!11761-123H6;0.156855!11842-124H6;0.225206!11837-124H1;0.517837!10568-108B1;0.258858!13230-141I8;0.00532016!13231-141I9;0.672943!10696-109G3;0.786285!10493-107B7;0.183916!10494-107B8;0.309635!10850-111F4;0.936925!10851-111F5;0.25834!10852-111F6;0.0417671!10853-111F7;0.202668!10854-111F8;0.390817!10855-111F9;0.235912!10856-111G1;0.220673!10847-111F1;0.399554!10846-111E9;0.200313!10848-111F2;0.528538!10845-111E8;0.792987!10857-111G2;0.631829!10858-111G3;0.475315!10156-103A3;0.667207!11901-125F2;0.254067!11902-125F3;0.00411825!11903-125F4;0.010808!10689-109F5;0.00394238!10648-109A9;0.762576!10784-110H1;0.135705!10744-110C6;0.184265!10772-110F7;0.181263!10474-106I6;0.567421!10600-108E6;0.233775!10684-109E9;0.0610795!12226-129F3;0.852573!12227-129F4;0.133988!10508-107D4;0.291255!10539-107G8;0.677108!10607-108F4;0.246265!10555-107I6;0.967515!10774-110F9;0.720381!10637-108I7;0.618561!10663-109C6;0.286224!10728-110A8;0.146673!10729-110A9;0.0205667!10430-106D7;0.0842754!10730-110B1;0.090913!10813-111B3;0.641343!10812-111B2;0.0262494!10037-101F1;0.00906177!10172-103C1;0.275037!10163-103B1;0.20429!10076-102A4;0.267977!10073-102A1;0.223343!10036-101E9;0.394232!10195-103E6;0.193993!10277-104E7;0.185401!10434-106E2;0.114987!10550-107I1;0.428912!10545-107H5;0.620665!10544-107H4;0.554873!10704-109H2;0.473332!10510-107D6;0.081278!10558-107I9;4.41385e-05!10020-101D2;0.442479!10732-110B3;0.665865!10049-101G4;0.0335745!10698-109G5;0.0227776!10437-106E5;0.606881!10417-106C3;0.417156!10035-101E8;0.552471!10171-103B9;0.181093!10157-103A4;0.180862!10034-101E7;0.224948!10072-101I9;0.174083!10199-103F1;0.473256!10200-103F2;0.226626!10697-109G4;0.434741!10723-110A3;0.880258!10179-103C8;0.640999!10160-103A7;0.282214!10180-103C9;0.115005!10162-103A9;0.00677419!10021-101D3;0.0219898!10840-111E3;0.506789!10706-109H4;0.77167!10033-101E6;0.276611!10032-101E5;0.125676!10490-107B4;0.176142!10439-106E7;0.566905!10022-101D4;0.300967!10176-103C5;0.289153!10469-106I1;0.237359!10067-101I4;0.472357!10411-106B6;0.484843!10471-106I3;0.874452!10030-101E3;0.172797!10475-106I7;0.483207!10787-110H4;0.878025!10477-106I9;0.544304!10695-109G2;0.000204493!11771-123I7;0.0058668!11772-123I8;0.104951!11773-123I9;0.106036!10093-102C3;0.157303!10442-106F1;0.106294!10442-106F1;0.474528!10201-103F3;0.506609!10639-108I9;0.261131!11843-124H7;0.708128!11841-124H5;0.464016!10693-109F9;0.633499!10436-106E4;0.0954182!10483-107A6;0.931837!10282-104F3;0.360655!10023-101D5;0.459679!10066-101I3;0.133871!10065-101I2;0.27944!10800-110I8;0.35848!10610-108F7;0.244391!10841-111E4;0.941924!10541-107H1;0.25181!10842-111E5;0.738083!10562-108A4;0.689638!10024-101D6;0.9498!10064-101I1;0.843896!10609-108F6;0.372454!10048-101G3;0.0480275!10781-110G7;0.511876!10181-103D1;0.267517!10159-103A6;0.34328!10056-101H2;0.257273!10737-110B8;0.765331!10025-101D7;0.114642!10044-101F8;0.933534!10424-106D1;0.0903748!10463-106H4;0.562855!10616-108G4;0.548348!10486-107A9;0.847421!10062-101H8;0.34874!10202-103F4;0.319748!10158-103A5;0.380222!10441-106E9;0.324396!10031-101E4;0.498105!10063-101H9;0.186978!10063-101H9;0.331787!11763-123H8;0.593043!11765-123I1;0.36758!11768-123I4;0.129766!10807-111A6;0.997952!10790-110H7;0.0380755!10798-110I6;0.676383!10786-110H3;0.00131176!10591-108D6;0.201641!10593-108D8;0.126929!10590-108D5;0.541345!10026-101D8;0.111657!10096-102C6;0.331264!10168-103B6;0.645558!10154-103A1;0.20246!10209-103G2;0.329974!10061-101H7;0.06985!10027-101D9;0.115083!10043-101F7;0.0299316!10783-110G9;0.000802054!10028-101E1;0.23173!10060-101H6;0.240497!10203-103F5;0.408965!10059-101H5;0.0374634!10047-101G2;0.148247!10029-101E2;0.00371718!10058-101H4;0.333968!10418-106C4;0.176432!10492-107B6;0.451391!10694-109G1;0.157947!10797-110I5;0.00787251!10057-101H3;0.0864019!10100-102D1;0.476705!10055-101H1;0.458438!10204-103F6;0.116797!10191-103E2;0.787183!10563-108A5;0.224989
|name=3-CGCTATTTAAAC,BestGuess:MA0170.1_C15(0.700098614633398),T:951.0(61.99%),B:21477.0(46.61%),P:1e-32
|name=3-CGCTATTTAAAC,BestGuess:MA0170.1_C15(0.700098614633398),T:951.0(61.99%),B:21477.0(46.61%),P:1e-32
|tomtom_result=Vsx2#MA0180.1;-2;0.000767622;0.365388;0.25267;9;CGCTATTTAAAC;CTAATTAAA;-!TBP#MA0108.2;3;0.000845752;0.402578;0.25267;12;CGCTATTTAAAC;CCCCGCCTTTTATAC;-!TBP#MA0108.2;3;0.000845752;0.402578;0.25267;12;CGCTATTTAAAC;CCCCGCCTTTTATAC;-!Foxa2#MA0047.2;-1;0.00151908;0.72308;0.34037;11;CGCTATTTAAAC;CCTAAGTAAACA;-!MEF2A#MA0052.1;-2;0.00258959;1.23264;0.429315;10;CGCTATTTAAAC;CTATTTATAG;+!ct#MA0218.1;-6;0.00287405;1.36805;0.429315;6;CGCTATTTAAAC;TTGAAC;+!C15#MA0170.1;-3;0.00376082;1.79015;0.481523;7;CGCTATTTAAAC;TAATTAA;-!Ubx#MA0094.2;-3;0.00447935;2.13217;0.490945;8;CGCTATTTAAAC;TAATTAAA;-!SPT2#MA0387.1;-2;0.00601764;2.8644;0.490945;10;CGCTATTTAAAC;TTCTTTAATT;-!SMP1#MA0383.1;4;0.00766734;3.64966;0.490945;12;CGCTATTTAAAC;TTACCTATAATTAAATTAGCA;+!CG7056#MA0183.1;-3;0.0082002;3.9033;0.490945;8;CGCTATTTAAAC;TAATTAAA;-!NHP6A#MA0345.1;5;0.0103138;4.90936;0.490945;12;CGCTATTTAAAC;ATGACCTATATATAAAAATGA;+!abd-A#MA0206.1;-3;0.0107884;5.13527;0.490945;7;CGCTATTTAAAC;TAATTAA;-!FOXA1#MA0148.1;-2;0.0110822;5.27511;0.490945;10;CGCTATTTAAAC;CAAAGTAAACA;-!Lim1#MA0194.1;-3;0.0112635;5.36143;0.490945;7;CGCTATTTAAAC;TAATTAA;-!br_Z2#MA0011.1;0;0.0115736;5.50905;0.490945;8;CGCTATTTAAAC;TACTATTT;+!Oct#MA0197.1;-3;0.0120119;5.71766;0.490945;8;CGCTATTTAAAC;TAATTAAA;-!al#MA0208.1;-3;0.0122612;5.83634;0.490945;7;CGCTATTTAAAC;TAATTAA;+!lab#MA0230.1;-3;0.0122612;5.83634;0.490945;7;CGCTATTTAAAC;TAATTAA;-!repo#MA0240.1;-3;0.0122612;5.83634;0.490945;7;CGCTATTTAAAC;TAATTAA;-!CG11294#MA0172.1;-3;0.0127874;6.08683;0.490945;7;CGCTATTTAAAC;TAATTAA;-!FKH1#MA0296.1;0;0.0129319;6.15557;0.490945;12;CGCTATTTAAAC;TGAATTGTAAACAAAGAGGA;+!CG32105#MA0178.1;-3;0.0133322;6.34612;0.490945;7;CGCTATTTAAAC;TAATTAA;-!inv#MA0229.1;-3;0.0160942;7.66086;0.490945;8;CGCTATTTAAAC;TAATTAGA;-!HGTX#MA0191.1;-3;0.0163301;7.77312;0.490945;7;CGCTATTTAAAC;TAATTAA;-!otp#MA0236.1;-3;0.0163301;7.77312;0.490945;7;CGCTATTTAAAC;TAATTAA;-!ro#MA0241.1;-2;0.0163301;7.77312;0.490945;7;CGCTATTTAAAC;CTAATTA;+!hbn#MA0226.1;-3;0.0176713;8.41156;0.490945;7;CGCTATTTAAAC;TAATTAA;-!fkh#MA0446.1;-2;0.0181662;8.6471;0.490945;10;CGCTATTTAAAC;TTAAGCAAACA;-!Vsx1#MA0181.1;-3;0.0198563;9.45162;0.490945;7;CGCTATTTAAAC;TAATTAA;-!FOXL1#MA0033.1;-3;0.0199429;9.4928;0.490945;8;CGCTATTTAAAC;TATGTATA;-
}}
}}

Latest revision as of 14:27, 7 September 2012

Full Name: 3-CGCTATTTAAAC,BestGuess:MA0170.1_C15(0.700098614633398),T:951.0(61.99%),B:21477.0(46.61%),P:1e-32

Motif matrix
POACGT
161.815713.25102.70873.227
2102.70865.619578.208204.465
336.138818.81195.10.951
436.138122.679102.708689.475
5698.98597.95373.22780.835
60.9510.95172.276876.822
764.6680.9510.951884.43
80.95128.5336.138885.381
9930.0780.9510.95119.02
10885.38136.1380.95128.53
11867.31224.72658.0110.951
12127.434692.32821.873109.365

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Vsx2#MA0180.1-20.0007676220.3653880.252679CGCTATTTAAACCTAATTAAA-
TBP#MA0108.230.0008457520.4025780.2526712CGCTATTTAAACCCCCGCCTTTTATAC-
TBP#MA0108.230.0008457520.4025780.2526712CGCTATTTAAACCCCCGCCTTTTATAC-
Foxa2#MA0047.2-10.001519080.723080.3403711CGCTATTTAAACCCTAAGTAAACA-
MEF2A#MA0052.1-20.002589591.232640.42931510CGCTATTTAAACCTATTTATAG+
ct#MA0218.1-60.002874051.368050.4293156CGCTATTTAAACTTGAAC+
C15#MA0170.1-30.003760821.790150.4815237CGCTATTTAAACTAATTAA-
Ubx#MA0094.2-30.004479352.132170.4909458CGCTATTTAAACTAATTAAA-
SPT2#MA0387.1-20.006017642.86440.49094510CGCTATTTAAACTTCTTTAATT-
SMP1#MA0383.140.007667343.649660.49094512CGCTATTTAAACTTACCTATAATTAAATTAGCA+
CG7056#MA0183.1-30.00820023.90330.4909458CGCTATTTAAACTAATTAAA-
NHP6A#MA0345.150.01031384.909360.49094512CGCTATTTAAACATGACCTATATATAAAAATGA+
abd-A#MA0206.1-30.01078845.135270.4909457CGCTATTTAAACTAATTAA-
FOXA1#MA0148.1-20.01108225.275110.49094510CGCTATTTAAACCAAAGTAAACA-
Lim1#MA0194.1-30.01126355.361430.4909457CGCTATTTAAACTAATTAA-
br_Z2#MA0011.100.01157365.509050.4909458CGCTATTTAAACTACTATTT+
Oct#MA0197.1-30.01201195.717660.4909458CGCTATTTAAACTAATTAAA-
al#MA0208.1-30.01226125.836340.4909457CGCTATTTAAACTAATTAA+
lab#MA0230.1-30.01226125.836340.4909457CGCTATTTAAACTAATTAA-
repo#MA0240.1-30.01226125.836340.4909457CGCTATTTAAACTAATTAA-
CG11294#MA0172.1-30.01278746.086830.4909457CGCTATTTAAACTAATTAA-
FKH1#MA0296.100.01293196.155570.49094512CGCTATTTAAACTGAATTGTAAACAAAGAGGA+
CG32105#MA0178.1-30.01333226.346120.4909457CGCTATTTAAACTAATTAA-
inv#MA0229.1-30.01609427.660860.4909458CGCTATTTAAACTAATTAGA-
HGTX#MA0191.1-30.01633017.773120.4909457CGCTATTTAAACTAATTAA-
otp#MA0236.1-30.01633017.773120.4909457CGCTATTTAAACTAATTAA-
ro#MA0241.1-20.01633017.773120.4909457CGCTATTTAAACCTAATTA+
hbn#MA0226.1-30.01767138.411560.4909457CGCTATTTAAACTAATTAA-
fkh#MA0446.1-20.01816628.64710.49094510CGCTATTTAAACTTAAGCAAACA-
Vsx1#MA0181.1-30.01985639.451620.4909457CGCTATTTAAACTAATTAA-
FOXL1#MA0033.1-30.01994299.49280.4909458CGCTATTTAAACTATGTATA-
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