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MacroAPE 1083:4-GGGTTAAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.582;292.67;1286.166;1.582!2;1.582;389.172;1189.664;1.582!3;52.206;387.59;846.37;295.834!4;314.818;1.582;354.368;911.232!5;523.642;1.582;1....")
 
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728197!10493-107B7;0.885087!10494-107B8;0.6564!10850-111F4;0.754488!10851-111F5;0.958711!10852-111F6;0.586863!10853-111F7;0.742591!10854-111F8;0.840932!10855-111F9;0.315374!10856-111G1;0.0894132!10847-111F1;0.991974!10846-111E9;0.324831!10848-111F2;0.701708!10845-111E8;0.410915!10857-111G2;0.784045!10858-111G3;0.724237!10156-103A3;0.789975!11901-125F2;0.98571!11902-125F3;0.051185!11903-125F4;0.237398!10689-109F5;0.139132!10648-109A9;0.465786!10784-110H1;0.192527!10744-110C6;0.622042!10772-110F7;0.284898!10474-106I6;0.194745!10600-108E6;0.277986!10684-109E9;0.361489!12226-129F3;0.431988!12227-129F4;0.574348!10508-107D4;0.328281!10539-107G8;0.976865!10607-108F4;0.602976!10555-107I6;0.0829107!10774-110F9;0.6497!10637-108I7;0.340399!10663-109C6;0.0828987!10728-110A8;0.496237!10729-110A9;0.982166!10430-106D7;0.334683!10730-110B1;0.492897!10813-111B3;0.612556!10812-111B2;0.328479!10037-101F1;0.893204!10172-103C1;0.51532!10163-103B1;0.654179!10076-102A4;0.986625!10073-102A1;0.311635!10036-101E9;0.677161!10195-103E6;0.291886!10277-104E7;0.517244!10434-106E2;0.269112!10550-107I1;0.5828!10545-107H5;0.962911!10544-107H4;0.992665!10704-109H2;0.325281!10510-107D6;0.468771!10558-107I9;0.900818!10020-101D2;0.257732!10732-110B3;0.104875!10049-101G4;0.0532082!10698-109G5;0.200068!10437-106E5;0.643972!10417-106C3;0.965969!10035-101E8;0.222584!10171-103B9;0.559798!10157-103A4;0.825688!10034-101E7;0.898068!10072-101I9;0.473379!10199-103F1;0.549085!10200-103F2;0.867734!10697-109G4;0.0570611!10723-110A3;0.190351!10179-103C8;0.989993!10160-103A7;0.464561!10180-103C9;0.625292!10162-103A9;0.700468!10021-101D3;0.99343!10840-111E3;0.412388!10706-109H4;0.12716!10033-101E6;0.610867!10032-101E5;0.767901!10490-107B4;0.392602!10439-106E7;0.184643!10022-101D4;0.558598!10176-103C5;0.326022!10469-106I1;0.912379!10067-101I4;0.480707!10411-106B6;0.175981!10471-106I3;0.789765!10030-101E3;0.545345!10475-106I7;0.108322!10787-110H4;0.46375!10477-106I9;0.827803!10695-109G2;0.386928!11771-123I7;0.716477!11772-123I8;0.656575!11773-123I9;0.548825!10093-102C3;0.408118!10442-106F1;0.56566!10442-106F1;0.0188583!10201-103F3;0.00788202!10639-108I9;0.171792!11843-124H7;0.0422602!11841-124H5;0.757466!10693-109F9;0.232939!10436-106E4;0.614533!10483-107A6;0.840913!10282-104F3;0.728491!10023-101D5;0.00158261!10066-101I3;0.00236084!10065-101I2;0.10367!10800-110I8;0.105764!10610-108F7;0.735626!10841-111E4;0.650707!10541-107H1;0.77372!10842-111E5;0.812233!10562-108A4;0.574627!10024-101D6;0.35548!10064-101I1;0.0929852!10609-108F6;0.0882413!10048-101G3;0.455021!10781-110G7;0.0762334!10181-103D1;0.168178!10159-103A6;0.552285!10056-101H2;0.865498!10737-110B8;0.21583!10025-101D7;0.182523!10044-101F8;0.440542!10424-106D1;0.712411!10463-106H4;0.0970158!10616-108G4;0.960056!10486-107A9;0.514153!10062-101H8;0.255306!10202-103F4;0.101103!10158-103A5;0.619178!10441-106E9;0.862498!10031-101E4;0.483059!10063-101H9;0.332337!10063-101H9;0.536696!11763-123H8;0.449102!11765-123I1;0.428476!11768-123I4;0.212388!10807-111A6;0.349422!10790-110H7;0.934602!10798-110I6;0.686019!10786-110H3;0.0863183!10591-108D6;0.310632!10593-108D8;0.676052!10590-108D5;0.197763!10026-101D8;0.302712!10096-102C6;0.00527423!10168-103B6;0.00274704!10154-103A1;0.661974!10209-103G2;0.948369!10061-101H7;0.0137181!10027-101D9;0.00949718!10043-101F7;0.652755!10783-110G9;0.889879!10028-101E1;0.222353!10060-101H6;0.00154483!10203-103F5;0.00117492!10059-101H5;0.00275504!10047-101G2;0.0191432!10029-101E2;0.297673!10058-101H4;0.08984!10418-106C4;0.0378584!10492-107B6;0.655642!10694-109G1;0.428928!10797-110I5;0.478547!10057-101H3;0.544732!10100-102D1;0.0614217!10055-101H1;0.317755!10204-103F6;0.0768583!10191-103E2;0.137718!10563-108A5;0.293461
|name=4-GGGTTAAA,BestGuess:PH0124.1_Obox5_1(0.672618635751901),T:1582.0(44.80%),B:15795.0(34.18%),P:1e-35
|name=4-GGGTTAAA,BestGuess:PH0124.1_Obox5_1(0.672618635751901),T:1582.0(44.80%),B:15795.0(34.18%),P:1e-35
|tomtom_result=Spz1#MA0111.1;1;0.00397613;1.89264;1;8;GGGTTAAA;AGGGTAACAGC;+!NR2F1#MA0017.1;1;0.0148522;7.06967;1;8;GGGTTAAA;AGGTTCAAAGGTCA;-!EDS1#MA0294.1;0;0.0148768;7.08135;1;8;GGGTTAAA;CGGAAAAAT;+!ct#MA0218.1;-2;0.0154073;7.33389;1;6;GGGTTAAA;GTTCAA;-!Tcfcp2l1#MA0145.1;2;0.0156448;7.44692;1;8;GGGTTAAA;CTGGTTTGAACTGG;-!Ptx1#MA0201.1;0;0.0157721;7.50754;1;7;GGGTTAAA;GGATTAA;-!YRR1#MA0439.1;2;0.0160297;7.63012;1;8;GGGTTAAA;GCGGAGATAAG;-!hb#MA0049.1;0;0.0165374;7.87179;1;8;GGGTTAAA;GCATAAAAAA;+!HNF4A#MA0114.1;0;0.0183057;8.71349;1;8;GGGTTAAA;AGGCCAAAGGTCA;+!YDR026C#MA0421.1;3;0.0200143;9.52681;1;7;GGGTTAAA;GCCGGGTAAA;-!YPR196W#MA0437.1;1;0.0207276;9.86635;1;8;GGGTTAAA;CGGAGAAAT;-!STB5#MA0392.1;1;0.0210013;9.9966;1;7;GGGTTAAA;CGGTGTTA;+
}}
}}

Latest revision as of 14:31, 7 September 2012

Full Name: 4-GGGTTAAA,BestGuess:PH0124.1_Obox5_1(0.672618635751901),T:1582.0(44.80%),B:15795.0(34.18%),P:1e-35

Motif matrix
POACGT
11.582292.671286.1661.582
21.582389.1721189.6641.582
352.206387.59846.37295.834
4314.8181.582354.368911.232
5523.6421.5821.5821055.194
6990.3321.5821.582588.504
71577.2541.5821.5821.582
81577.2541.5821.5821.582

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Spz1#MA0111.110.003976131.8926418GGGTTAAAAGGGTAACAGC+
NR2F1#MA0017.110.01485227.0696718GGGTTAAAAGGTTCAAAGGTCA-
EDS1#MA0294.100.01487687.0813518GGGTTAAACGGAAAAAT+
ct#MA0218.1-20.01540737.3338916GGGTTAAAGTTCAA-
Tcfcp2l1#MA0145.120.01564487.4469218GGGTTAAACTGGTTTGAACTGG-
Ptx1#MA0201.100.01577217.5075417GGGTTAAAGGATTAA-
YRR1#MA0439.120.01602977.6301218GGGTTAAAGCGGAGATAAG-
hb#MA0049.100.01653747.8717918GGGTTAAAGCATAAAAAA+
HNF4A#MA0114.100.01830578.7134918GGGTTAAAAGGCCAAAGGTCA+
YDR026C#MA0421.130.02001439.5268117GGGTTAAAGCCGGGTAAA-
YPR196W#MA0437.110.02072769.8663518GGGTTAAACGGAGAAAT-
STB5#MA0392.110.02100139.996617GGGTTAAACGGTGTTA+
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