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MacroAPE 1083:10-CGCGTGTTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;125.58;838.11;177.45;223.86!2;10.92;99.645;1128.855;125.58!3;146.055;838.11;211.575;169.26!4;106.47;219.765;814.905;223.86!5;101.01;245.7;47...")
 
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-110H6;0.9293!10828-111C9;0.612668!10788-110H5;0.104732!10792-110H9;0.768068!10765-110E9;0.338014!10829-111D1;0.514853!10830-111D2;0.644152!10831-111D3;0.103261!10832-111D4;0.321658!10833-111D5;0.377216!10764-110E8;0.622152!10770-110F5;0.191481!10399-106A3;0.299185!10400-106A4;0.991874!10405-106A9;0.99236!10834-111D6;0.871631!10835-111D7;0.348698!10836-111D8;0.851743!10837-111D9;0.906494!10699-109G6;0.38818!10802-111A1;0.813744!10796-110I4;0.531917!10010-101C1;0.846652!10810-111A9;0.721879!10421-106C7;0.97947!10708-109H6;0.907905!12235-129G3;0.504372!12236-129G4;0.419983!12237-129G5;0.622473!10167-103B5;0.23495!10151-102I7;0.730722!10428-106D5;0.819602!10795-110I3;0.767953!10805-111A4;0.95329!10052-101G7;0.725454!10189-103D9;0.649146!10589-108D4;0.6162!10425-106D2;0.4012!10427-106D4;0.794!10702-109G9;0.96354!10432-106D9;0.106163!10496-107C1;0.78589!10718-109I7;0.33936!10011-101C2;0.530048!10053-101G8;0.704032!10686-109F2;0.619797!10084-102B3;0.007269!10012-101C3;0.835375!10085-102B4;0.650788!10482-107A5;0.690078!10419-106C5;0.756336!10080-102A8;0.902748!10760-110E4;0.779947!10709-109H7;0.508087!10710-109H8;0.759688!10703-109H1;0.82295!10719-109I8;0.334707!10642-109A3;0.17945!10177-103C6;0.159464!10164-103B2;0.676687!10173-103C2;0.560911!10166-103B4;0.793836!10083-102B2;0.899167!10188-103D8;0.878105!10552-107I3;0.75096!10553-107I4;0.877587!10013-101C4;0.912248!10536-107G5;0.471069!10618-108G6;0.937684!10423-106C9;0.872266!10785-110H2;0.908512!12238-129G6;0.707521!12239-129G7;0.504431!12240-129G8;0.72203!10416-106C2;0.104286!10801-110I9;0.744377!10766-110F1;0.803544!10824-111C5;0.864547!10825-111C6;0.579821!10826-111C7;0.53714!10454-106G4;0.585565!10409-106B4;0.726486!10638-108I8;0.649933!10636-108I6;0.630924!10513-107D9;0.930862!10420-106C6;0.959793!10082-102B1;0.0588877!10014-101C5;0.472669!10070-101I7;0.635815!10452-106G2;0.96895!10453-106G3;0.526176!10449-106F8;0.701931!10042-101F6;0.648402!10069-101I6;0.893291!10193-103E4;0.659579!10631-108I1;0.636775!10438-106E6;0.779752!10488-107B2;0.803574!10196-103E7;0.530449!10071-101I8;0.742103!10071-101I8;0.91766!10041-101F5;0.4249!10451-106G1;0.728548!10450-106F9;0.211086!10604-108F1;0.166651!10605-108F2;0.409173!10606-108F3;0.697088!10603-108E9;0.264351!10497-107C2;0.492598!10448-106F7;0.981852!10643-109A4;0.587716!10426-106D3;0.275044!10431-106D8;0.834383!10197-103E8;0.96415!10443-106F2;0.543259!10815-111B5;0.973043!10816-111B6;0.983255!10817-111B7;0.980427!10015-101C6;0.942863!10410-106B5;0.555733!10054-101G9;0.42467!10758-110E2;0.621113!10711-109H9;0.967067!10040-101F4;0.889189!10470-106I2;0.684686!10415-106C1;0.897234!10198-103E9;0.356498!10614-108G2;0.798502!10612-108F9;0.725636!10549-107H9;0.713566!10615-108G3;0.97876!10487-107B1;0.0354945!10433-106E1;0.859067!10688-109F4;0.600627!10444-106F3;0.685607!10444-106F3;0.483163!10485-107A8;0.409176!10413-106B8;0.783649!10175-103C4;0.222288!10161-103A8;0.614!12131-128D7;0.839117!10624-108H3;0.0821658!10712-109I1;0.455266!10205-103F7;0.894931!10206-103F8;0.70562!10207-103F9;0.699034!10050-101G5;0.843585!10051-101G6;0.932747!10016-101C7;0.817866!10046-101G1;0.981198!10778-110G4;0.907933!10633-108I3;0.391356!10818-111B8;0.234811!10819-111B9;0.71315!10820-111C1;0.649229!10484-107A7;0.599131!10808-111A7;0.994102!10169-103B7;0.90079!10153-102I9;0.813892!13425-144D5;0.761305!13433-144E4;0.636912!13437-144E8;0.535972!11904-125F5;0.351158!11905-125F6;0.254328!10039-101F3;0.175971!10791-110H8;0.8011!10017-101C8;0.616718!10045-101F9;0.87043!10509-107D5;0.827083!10839-111E2;0.919782!10692-109F8;0.736808!10079-102A7;0.4579!10078-102A6;0.519271!10721-110A1;0.437572!10569-108B2;0.417362!10570-108B3;0.0674141!10571-108B4;0.19238!10647-109A8;0.247858!10752-110D5;0.386683!10782-110G8;0.855058!10726-110A6;0.702712!10018-101C9;0.486988!10086-102B5;0.898844!10182-103D2;0.95737!10165-103B3;0.706211!10499-107C4;0.71934!10408-106B3;0.432985!10019-101D1;0.382421!10068-101I5;0.757519!10075-102A3;0.445212!10077-102A5;0.425861!10727-110A7;0.353819!10775-110G1;0.926878!10412-106B7;0.874666!12231-129F8;0.999249!12232-129F9;0.334415!12233-129G1;0.931827!12234-129G2;0.615733!10414-106B9;0.895734!10170-103B8;0.436374!10183-103D3;0.456994!10150-102I6;0.565611!10174-103C3;0.677287!10155-103A2;0.560858!10038-101F2;0.808621!10838-111E1;0.778161!10759-110E3;0.0910113!10514-107E1;0.79057!10465-106H6;0.404332!10691-109F7;0.25142!10843-111E6;0.867666!10844-111E7;0.109623!11747-123G1;0.00938478!11748-123G2;0.723221!11749-123G3;0.320397!11750-123G4;0.72604!11751-123G5;0.587965!11840-124H4;0.425192!11752-123G6;0.315972!11753-123G7;0.243941!11754-123G8;0.116676!11755-123G9;0.364553!11756-123H1;0.443835!11833-124G6;0.72651!11760-123H5;0.388509!11836-124G9;0.767454!11758-123H3;0.434953!11835-124G8;0.257343!11762-123H7;0.640416!11838-124H2;0.116837!11757-123H2;0.376892!11759-123H4;0.543832!11761-123H6;0.700586!11842-124H6;0.570527!11837-124H1;0.269371!10568-108B1;0.802984!13230-141I8;0.13805!13231-141I9;0.826318!10696-109G3;0.598717!10493-107B7;0.8625!10494-107B8;0.634989!10850-111F4;0.603864!10851-111F5;0.710062!10852-111F6;0.45179!10853-111F7;0.529411!10854-111F8;0.530966!10855-111F9;0.697039!10856-111G1;0.890807!10847-111F1;0.531254!10846-111E9;0.861212!10848-111F2;0.553974!10845-111E8;0.410851!10857-111G2;0.405646!10858-111G3;0.635819!10156-103A3;0.195294!11901-125F2;0.818098!11902-125F3;0.708627!11903-125F4;0.664178!10689-109F5;0.736577!10648-109A9;0.698825!10784-110H1;0.276325!10744-110C6;0.888414!10772-110F7;0.561198!10474-106I6;0.630729!10600-108E6;0.64602!10684-109E9;0.694544!12226-129F3;0.359382!12227-129F4;0.496065!10508-107D4;0.373313!10539-107G8;0.271521!10607-108F4;0.990056!10555-107I6;0.350381!10774-110F9;0.993611!10637-108I7;0.966537!10663-109C6;0.183862!10728-110A8;0.532277!10729-110A9;0.176813!10430-106D7;0.527527!10730-110B1;0.871834!10813-111B3;0.562044!10812-111B2;0.934661!10037-101F1;0.744883!10172-103C1;0.74411!10163-103B1;0.626905!10076-102A4;0.779622!10073-102A1;0.659983!10036-101E9;0.557544!10195-103E6;0.824962!10277-104E7;0.704675!10434-106E2;0.695066!10550-107I1;0.89686!10545-107H5;0.44017!10544-107H4;0.455185!10704-109H2;0.922137!10510-107D6;0.553133!10558-107I9;0.00548776!10020-101D2;0.0387553!10732-110B3;0.922773!10049-101G4;0.727298!10698-109G5;0.229589!10437-106E5;0.764111!10417-106C3;0.626643!10035-101E8;0.649145!10171-103B9;0.70798!10157-103A4;0.526329!10034-101E7;0.692514!10072-101I9;0.692825!10199-103F1;0.568181!10200-103F2;0.636852!10697-109G4;0.579098!10723-110A3;0.932895!10179-103C8;0.478561!10160-103A7;0.843174!10180-103C9;0.692686!10162-103A9;0.290765!10021-101D3;0.314737!10840-111E3;0.48618!10706-109H4;0.671611!10033-101E6;0.163918!10032-101E5;0.660971!10490-107B4;0.797412!10439-106E7;0.935766!10022-101D4;0.706423!10176-103C5;0.684248!10469-106I1;0.543402!10067-101I4;0.674483!10411-106B6;0.761184!10471-106I3;0.29371!10030-101E3;0.163591!10475-106I7;0.955452!10787-110H4;0.202338!10477-106I9;0.881104!10695-109G2;0.423777!11771-123I7;0.449609!11772-123I8;0.983235!11773-123I9;0.86576!10093-102C3;0.811244!10442-106F1;0.455826!10442-106F1;0.557951!10201-103F3;0.691309!10639-108I9;0.620223!11843-124H7;0.999166!11841-124H5;0.594677!10693-109F9;0.963247!10436-106E4;0.735144!10483-107A6;0.696359!10282-104F3;0.955087!10023-101D5;0.661606!10066-101I3;0.67926!10065-101I2;0.709714!10800-110I8;0.686782!10610-108F7;0.190934!10841-111E4;0.0971184!10541-107H1;0.687421!10842-111E5;0.167742!10562-108A4;0.194229!10024-101D6;0.527417!10064-101I1;0.725115!10609-108F6;0.97234!10048-101G3;0.462761!10781-110G7;0.591369!10181-103D1;0.944001!10159-103A6;0.803712!10056-101H2;0.812416!10737-110B8;0.985048!10025-101D7;0.532562!10044-101F8;0.955507!10424-106D1;0.7454!10463-106H4;0.920363!10616-108G4;0.966982!10486-107A9;0.633872!10062-101H8;0.445742!10202-103F4;0.96883!10158-103A5;0.514367!10441-106E9;0.839211!10031-101E4;0.0334348!10063-101H9;0.916194!10063-101H9;0.398075!11763-123H8;0.886675!11765-123I1;0.466945!11768-123I4;0.493985!10807-111A6;0.483488!10790-110H7;0.956348!10798-110I6;0.67043!10786-110H3;0.636017!10591-108D6;0.946484!10593-108D8;0.450374!10590-108D5;0.843588!10026-101D8;0.801145!10096-102C6;0.382861!10168-103B6;0.3342!10154-103A1;0.839354!10209-103G2;0.822386!10061-101H7;0.501922!10027-101D9;0.435747!10043-101F7;0.764352!10783-110G9;0.915707!10028-101E1;0.327213!10060-101H6;0.311796!10203-103F5;0.589283!10059-101H5;0.599261!10047-101G2;0.374841!10029-101E2;0.576191!10058-101H4;0.615348!10418-106C4;0.433884!10492-107B6;0.67556!10694-109G1;0.665129!10797-110I5;0.117476!10057-101H3;0.734283!10100-102D1;0.785357!10055-101H1;0.589957!10204-103F6;0.656584!10191-103E2;0.740897!10563-108A5;0.639865
|name=10-CGCGTGTTA,CNhs13235,BestGuess:AHR_ARNT_ARNT2.p2.SwissRegulon.nucfreq(0.731547557187781),T:1365.0(55.20%),B:19304.7(43.43%),P:1e-31
|name=10-CGCGTGTTA,CNhs13235,BestGuess:AHR_ARNT_ARNT2.p2.SwissRegulon.nucfreq(0.731547557187781),T:1365.0(55.20%),B:19304.7(43.43%),P:1e-31
|tomtom_result=Arnt::Ahr#MA0006.1;0;0.000687384;0.327195;0.65439;6;CGCGTGTTA;TGCGTG;+!caup#MA0217.1;-4;0.00456131;2.17118;1;5;CGCGTGTTA;TGTTA;-!RSC3#MA0374.1;0;0.00617416;2.9389;1;7;CGCGTGTTA;CGCGCGG;+!MBP1#MA0329.1;1;0.0127241;6.05667;1;6;CGCGTGTTA;ACGCGTA;+!mirr#MA0233.1;-4;0.0127641;6.0757;1;5;CGCGTGTTA;TGTTT;-!ara#MA0210.1;-4;0.0143523;6.8317;1;5;CGCGTGTTA;TGTTA;-!MAX#MA0058.1;1;0.0166376;7.91949;1;9;CGCGTGTTA;TCACGTGGTC;-!HAC1#MA0310.1;0;0.0177684;8.45774;1;8;CGCGTGTTA;CACGTGTC;-!Macho-1#MA0118.1;0;0.0199605;9.5012;1;9;CGCGTGTTA;TGGGGGGTC;+!MBP1::SWI6#MA0330.1;1;0.0203705;9.69636;1;6;CGCGTGTTA;ACGCGTT;+!DOT6#MA0351.1;13;0.0208054;9.90335;1;8;CGCGTGTTA;TTCTGCACCTCATCGCATCCT;+
}}
}}

Latest revision as of 14:32, 7 September 2012

Full Name: 10-CGCGTGTTA,CNhs13235,BestGuess:AHR_ARNT_ARNT2.p2.SwissRegulon.nucfreq(0.731547557187781),T:1365.0(55.20%),B:19304.7(43.43%),P:1e-31

Motif matrix
POACGT
1125.58838.11177.45223.86
210.9299.6451128.855125.58
3146.055838.11211.575169.26
4106.47219.765814.905223.86
5101.01245.747.775970.515
6187.005180.18772.59225.225
7126.945105.105132.4051000.545
8161.07202.02227.955773.955
91056.5145.0451.365262.08

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Arnt::Ahr#MA0006.100.0006873840.3271950.654396CGCGTGTTATGCGTG+
caup#MA0217.1-40.004561312.1711815CGCGTGTTATGTTA-
RSC3#MA0374.100.006174162.938917CGCGTGTTACGCGCGG+
MBP1#MA0329.110.01272416.0566716CGCGTGTTAACGCGTA+
mirr#MA0233.1-40.01276416.075715CGCGTGTTATGTTT-
ara#MA0210.1-40.01435236.831715CGCGTGTTATGTTA-
MAX#MA0058.110.01663767.9194919CGCGTGTTATCACGTGGTC-
HAC1#MA0310.100.01776848.4577418CGCGTGTTACACGTGTC-
Macho-1#MA0118.100.01996059.501219CGCGTGTTATGGGGGGTC+
MBP1::SWI6#MA0330.110.02037059.6963616CGCGTGTTAACGCGTT+
DOT6#MA0351.1130.02080549.9033518CGCGTGTTATTCTGCACCTCATCGCATCCT+
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