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MacroAPE 1083:11-GTAACGCCCC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;3.672;10.098;265.608;26.622!2;7.344;36.72;18.36;243.576!3;203.184;37.026;41.616;24.174!4;268.362;13.158;1.836;22.644!5;18.054;260.1;18.054;9...")
 
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7!12184-129A6;0.0404334!10809-111A8;0.0900456!10597-108E3;0.842257!10717-109I6;0.894294!10455-106G5;0.00177774!10534-107G3;0.704445!10429-106D6;0.428574!10464-106H5;0.318072!10827-111C8;0.415577!10789-110H6;0.355848!10828-111C9;0.988349!10788-110H5;0.592448!10792-110H9;0.960156!10765-110E9;0.367652!10829-111D1;0.576489!10830-111D2;0.203267!10831-111D3;0.422835!10832-111D4;0.143426!10833-111D5;0.47489!10764-110E8;0.766699!10770-110F5;0.436126!10399-106A3;0.659889!10400-106A4;0.701061!10405-106A9;0.8204!10834-111D6;0.82587!10835-111D7;0.592266!10836-111D8;0.612473!10837-111D9;0.283082!10699-109G6;0.823606!10802-111A1;0.193465!10796-110I4;0.446253!10010-101C1;0.368117!10810-111A9;0.730931!10421-106C7;0.714809!10708-109H6;0.714806!12235-129G3;0.690648!12236-129G4;0.0422948!12237-129G5;0.746973!10167-103B5;0.185929!10151-102I7;0.367982!10428-106D5;0.398949!10795-110I3;0.899449!10805-111A4;0.419104!10052-101G7;0.823636!10189-103D9;0.664928!10589-108D4;0.976653!10425-106D2;0.688832!10427-106D4;0.360918!10702-109G9;0.937468!10432-106D9;0.366499!10496-107C1;0.305497!10718-109I7;0.270163!10011-101C2;0.70596!10053-101G8;0.991622!10686-109F2;0.0307329!10084-102B3;0.275385!10012-101C3;0.365472!10085-102B4;0.282153!10482-107A5;0.385603!10419-106C5;0.577834!10080-102A8;0.185155!10760-110E4;0.245051!10709-109H7;0.172063!10710-109H8;0.00270286!10703-109H1;0.747475!10719-109I8;0.870981!10642-109A3;0.783071!10177-103C6;0.116235!10164-103B2;0.553379!10173-103C2;0.315728!10166-103B4;0.145028!10083-102B2;0.183331!10188-103D8;0.151562!10552-107I3;0.334182!10553-107I4;0.33396!10013-101C4;0.00277791!10536-107G5;0.982679!10618-108G6;0.0553329!10423-106C9;0.298413!10785-110H2;0.24603!12238-129G6;0.211224!12239-129G7;0.030972!12240-129G8;0.786745!10416-106C2;0.310666!10801-110I9;0.753083!10766-110F1;0.99346!10824-111C5;0.65831!10825-111C6;0.541156!10826-111C7;0.479688!10454-106G4;0.577008!10409-106B4;0.822132!10638-108I8;0.76467!10636-108I6;0.87156!10513-107D9;0.0501268!10420-106C6;0.0180223!10082-102B1;0.457724!10014-101C5;0.48455!10070-101I7;0.572594!10452-106G2;0.720962!10453-106G3;0.593811!10449-106F8;0.211578!10042-101F6;0.231885!10069-101I6;0.756151!10193-103E4;0.6228!10631-108I1;0.366106!10438-106E6;0.573468!10488-107B2;0.0078479!10196-103E7;0.785182!10071-101I8;0.599258!10071-101I8;0.873379!10041-101F5;0.143136!10451-106G1;0.649156!10450-106F9;0.536584!10604-108F1;0.777449!10605-108F2;0.551009!10606-108F3;0.52242!10603-108E9;0.685596!10497-107C2;0.905581!10448-106F7;0.285075!10643-109A4;0.705077!10426-106D3;7.61909e-05!10431-106D8;0.0243017!10197-103E8;0.0755238!10443-106F2;0.791826!10815-111B5;0.725241!10816-111B6;0.749821!10817-111B7;0.743893!10015-101C6;0.773211!10410-106B5;0.444471!10054-101G9;0.784802!10758-110E2;0.48419!10711-109H9;0.00572017!10040-101F4;0.150812!10470-106I2;0.260036!10415-106C1;0.0574531!10198-103E9;0.0674314!10614-108G2;0.701804!10612-108F9;0.444692!10549-107H9;0.907971!10615-108G3;0.550474!10487-107B1;0.741868!10433-106E1;0.877363!10688-109F4;0.110021!10444-106F3;0.100702!10444-106F3;0.282106!10485-107A8;0.306946!10413-106B8;0.556593!10175-103C4;0.0556204!10161-103A8;0.720965!12131-128D7;0.632849!10624-108H3;0.349836!10712-109I1;0.107587!10205-103F7;0.470705!10206-103F8;0.729829!10207-103F9;0.428591!10050-101G5;0.726723!10051-101G6;0.329798!10016-101C7;0.892648!10046-101G1;0.841016!10778-110G4;0.771298!10633-108I3;0.322424!10818-111B8;0.685478!10819-111B9;0.921962!10820-111C1;0.841202!10484-107A7;0.855118!10808-111A7;0.151492!10169-103B7;0.311518!10153-102I9;0.273515!13425-144D5;0.454403!13433-144E4;0.0547904!13437-144E8;0.140891!11904-125F5;0.349569!11905-125F6;0.000124482!10039-101F3;4.4755e-09!10791-110H8;0.324607!10017-101C8;0.608888!10045-101F9;0.0230615!10509-107D5;0.239131!10839-111E2;0.485502!10692-109F8;0.615161!10079-102A7;0.0456825!10078-102A6;0.617197!10721-110A1;0.890256!10569-108B2;0.860497!10570-108B3;0.259014!10571-108B4;0.32332!10647-109A8;0.0512679!10752-110D5;0.137614!10782-110G8;0.975561!10726-110A6;0.000188498!10018-101C9;0.590433!10086-102B5;0.159082!10182-103D2;0.39679!10165-103B3;0.725883!10499-107C4;0.623349!10408-106B3;0.0603916!10019-101D1;0.270595!10068-101I5;0.0819097!10075-102A3;0.425773!10077-102A5;0.170155!10727-110A7;0.658822!10775-110G1;0.952072!10412-106B7;0.795005!12231-129F8;0.484517!12232-129F9;0.0475215!12233-129G1;0.102166!12234-129G2;0.0157295!10414-106B9;0.0444766!10170-103B8;0.356458!10183-103D3;0.18991!10150-102I6;0.191275!10174-103C3;0.262742!10155-103A2;0.98558!10038-101F2;0.642006!10838-111E1;0.711357!10759-110E3;0.752112!10514-107E1;0.509325!10465-106H6;0.32241!10691-109F7;0.635856!10843-111E6;0.668758!10844-111E7;0.0653763!11747-123G1;0.237228!11748-123G2;0.0137172!11749-123G3;0.280136!11750-123G4;0.0996219!11751-123G5;0.274957!11840-124H4;0.164646!11752-123G6;0.332003!11753-123G7;0.613899!11754-123G8;0.14952!11755-123G9;0.0856987!11756-123H1;0.0145892!11833-124G6;0.0363204!11760-123H5;0.448326!11836-124G9;0.0709635!11758-123H3;0.0352815!11835-124G8;0.116841!11762-123H7;0.669293!11838-124H2;0.832549!11757-123H2;0.600802!11759-123H4;0.0849253!11761-123H6;0.0630921!11842-124H6;0.880817!11837-124H1;0.179906!10568-108B1;0.318175!13230-141I8;0.0197901!13231-141I9;0.22669!10696-109G3;0.192616!10493-107B7;0.482609!10494-107B8;0.168538!10850-111F4;0.600991!10851-111F5;0.0876278!10852-111F6;0.0118725!10853-111F7;0.0394059!10854-111F8;0.166796!10855-111F9;0.00408634!10856-111G1;0.551379!10847-111F1;0.0113597!10846-111E9;0.35672!10848-111F2;0.346939!10845-111E8;0.226823!10857-111G2;0.69108!10858-111G3;0.791506!10156-103A3;0.791125!11901-125F2;0.301801!11902-125F3;0.0931322!11903-125F4;0.0167172!10689-109F5;0.184497!10648-109A9;0.565453!10784-110H1;0.498295!10744-110C6;0.512464!10772-110F7;0.422224!10474-106I6;0.915919!10600-108E6;0.810636!10684-109E9;0.249454!12226-129F3;0.00192668!12227-129F4;0.00974281!10508-107D4;0.572039!10539-107G8;0.0216081!10607-108F4;0.244997!10555-107I6;0.304875!10774-110F9;0.0552627!10637-108I7;0.795203!10663-109C6;0.12224!10728-110A8;0.952617!10729-110A9;0.683231!10430-106D7;0.157082!10730-110B1;0.693883!10813-111B3;0.639944!10812-111B2;0.549767!10037-101F1;0.97103!10172-103C1;0.331139!10163-103B1;0.237575!10076-102A4;0.301388!10073-102A1;0.26783!10036-101E9;0.0912892!10195-103E6;0.32131!10277-104E7;0.241243!10434-106E2;0.377589!10550-107I1;0.0014465!10545-107H5;0.0636209!10544-107H4;0.875147!10704-109H2;0.779471!10510-107D6;0.179433!10558-107I9;0.470953!10020-101D2;0.193315!10732-110B3;0.686494!10049-101G4;0.187326!10698-109G5;0.355404!10437-106E5;0.837942!10417-106C3;0.542197!10035-101E8;0.000592549!10171-103B9;0.336631!10157-103A4;0.171615!10034-101E7;0.244915!10072-101I9;0.36332!10199-103F1;0.10969!10200-103F2;0.335323!10697-109G4;0.793965!10723-110A3;0.0320595!10179-103C8;0.0100418!10160-103A7;0.1979!10180-103C9;0.245317!10162-103A9;0.743349!10021-101D3;0.668211!10840-111E3;0.312526!10706-109H4;0.910912!10033-101E6;0.747863!10032-101E5;0.547944!10490-107B4;0.29186!10439-106E7;0.0121944!10022-101D4;0.17523!10176-103C5;0.783025!10469-106I1;0.325125!10067-101I4;0.0490465!10411-106B6;0.657438!10471-106I3;0.0127227!10030-101E3;0.407079!10475-106I7;0.982652!10787-110H4;0.416763!10477-106I9;0.198585!10695-109G2;0.0267003!11771-123I7;0.314372!11772-123I8;0.907712!11773-123I9;0.473581!10093-102C3;0.0777483!10442-106F1;0.413932!10442-106F1;0.0017531!10201-103F3;0.00038527!10639-108I9;0.774088!11843-124H7;0.000119016!11841-124H5;0.0279523!10693-109F9;0.717244!10436-106E4;0.000595842!10483-107A6;0.0935832!10282-104F3;0.490584!10023-101D5;0.104422!10066-101I3;0.378234!10065-101I2;0.31356!10800-110I8;0.409134!10610-108F7;0.753315!10841-111E4;0.901961!10541-107H1;0.243203!10842-111E5;0.162161!10562-108A4;0.599147!10024-101D6;0.435155!10064-101I1;0.348345!10609-108F6;0.995661!10048-101G3;0.22086!10781-110G7;0.666224!10181-103D1;0.588466!10159-103A6;0.526205!10056-101H2;0.696381!10737-110B8;0.38783!10025-101D7;0.0292896!10044-101F8;0.318331!10424-106D1;0.165599!10463-106H4;0.692768!10616-108G4;0.0318069!10486-107A9;0.250519!10062-101H8;0.837754!10202-103F4;0.873506!10158-103A5;0.822002!10441-106E9;0.814898!10031-101E4;0.557081!10063-101H9;0.391871!10063-101H9;0.110378!11763-123H8;0.630498!11765-123I1;0.0538663!11768-123I4;0.55898!10807-111A6;0.164147!10790-110H7;0.694778!10798-110I6;0.720325!10786-110H3;0.790597!10591-108D6;0.108317!10593-108D8;0.845569!10590-108D5;0.526069!10026-101D8;0.347502!10096-102C6;0.224644!10168-103B6;0.378864!10154-103A1;0.60197!10209-103G2;0.517437!10061-101H7;0.960577!10027-101D9;0.469026!10043-101F7;0.483603!10783-110G9;0.225661!10028-101E1;0.63691!10060-101H6;0.310364!10203-103F5;0.650287!10059-101H5;0.732936!10047-101G2;0.943812!10029-101E2;0.328308!10058-101H4;0.288632!10418-106C4;0.707071!10492-107B6;0.575979!10694-109G1;0.790497!10797-110I5;0.0952238!10057-101H3;0.414998!10100-102D1;0.778802!10055-101H1;0.867884!10204-103F6;0.613835!10191-103E2;0.63552!10563-108A5;0.763962
|name=11-GTAACGCCCC,CNhs13480,BestGuess:RELB_si_HM09(0.668442487331342),T:306.0(6.72%),B:1487.7(3.41%),P:1e-27
|name=11-GTAACGCCCC,CNhs13480,BestGuess:RELB_si_HM09(0.668442487331342),T:306.0(6.72%),B:1487.7(3.41%),P:1e-27
|tomtom_result=hkb#MA0450.1;-1;9.35067e-05;0.0445092;0.0889958;9;GTAACGCCCC;TCACGCCCC;-!REL#MA0101.1;0;0.00229364;1.09177;0.797042;10;GTAACGCCCC;GGAAATCCCC;-!CRZ1#MA0285.1;-1;0.00418331;1.99126;0.797042;9;GTAACGCCCC;CTAAGCCAC;+!dl_2#MA0023.1;0;0.00472095;2.24717;0.797042;10;GTAACGCCCC;GGAAAACCCC;-!Macho-1#MA0118.1;-1;0.00487177;2.31896;0.797042;9;GTAACGCCCC;GAACCCCCA;-!Klf4#MA0039.2;0;0.0064794;3.08419;0.797042;10;GTAACGCCCC;GCCCCACCCA;-!NF-kappaB#MA0061.1;0;0.00718923;3.42207;0.797042;10;GTAACGCCCC;GGAAATTCCC;-!AFT2#MA0270.1;-2;0.00760012;3.61766;0.797042;8;GTAACGCCCC;CACACCCC;+!STB5#MA0392.1;-1;0.00852928;4.05994;0.797042;8;GTAACGCCCC;TAACACCG;-!btd#MA0443.1;-2;0.00913031;4.34603;0.797042;8;GTAACGCCCC;TCCGCCCCCT;-!h#MA0449.1;0;0.0115236;5.48526;0.797042;10;GTAACGCCCC;GGCACGTGCC;+!dl_1#MA0022.1;2;0.0126745;6.03306;0.797042;10;GTAACGCCCC;CGGAAAAACCCC;-!Pax5#MA0014.1;2;0.0128202;6.10241;0.797042;10;GTAACGCCCC;CCGCTACGCTTCAGTGCTCT;-!CTCF#MA0139.1;-1;0.0148805;7.0831;0.797042;9;GTAACGCCCC;TAGCGCCCCCTGGTGGCCA;-!RPN4#MA0373.1;-4;0.0149112;7.09773;0.797042;6;GTAACGCCCC;CGCCACC;-!RELA#MA0107.1;0;0.0149298;7.10656;0.797042;10;GTAACGCCCC;GGAAATTCCC;-!SNT2#MA0384.1;2;0.0157882;7.51518;0.797042;9;GTAACGCCCC;TGGTAGCGCCG;+!MIZF#MA0131.1;-1;0.0159114;7.57381;0.797042;9;GTAACGCCCC;TAACGTCCGC;+
}}
}}

Latest revision as of 14:40, 7 September 2012

Full Name: 11-GTAACGCCCC,CNhs13480,BestGuess:RELB_si_HM09(0.668442487331342),T:306.0(6.72%),B:1487.7(3.41%),P:1e-27

Motif matrix
POACGT
13.67210.098265.60826.622
27.34436.7218.36243.576
3203.18437.02641.61624.174
4268.36213.1581.83622.644
518.054260.118.0549.792
631.51849.878213.58811.016
77.65255.5129.37613.464
812.546241.43426.0126.01
928.764244.49426.3166.426
108.874254.28618.66624.174

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hkb#MA0450.1-19.35067e-050.04450920.08899589GTAACGCCCCTCACGCCCC-
REL#MA0101.100.002293641.091770.79704210GTAACGCCCCGGAAATCCCC-
CRZ1#MA0285.1-10.004183311.991260.7970429GTAACGCCCCCTAAGCCAC+
dl_2#MA0023.100.004720952.247170.79704210GTAACGCCCCGGAAAACCCC-
Macho-1#MA0118.1-10.004871772.318960.7970429GTAACGCCCCGAACCCCCA-
Klf4#MA0039.200.00647943.084190.79704210GTAACGCCCCGCCCCACCCA-
NF-kappaB#MA0061.100.007189233.422070.79704210GTAACGCCCCGGAAATTCCC-
AFT2#MA0270.1-20.007600123.617660.7970428GTAACGCCCCCACACCCC+
STB5#MA0392.1-10.008529284.059940.7970428GTAACGCCCCTAACACCG-
btd#MA0443.1-20.009130314.346030.7970428GTAACGCCCCTCCGCCCCCT-
h#MA0449.100.01152365.485260.79704210GTAACGCCCCGGCACGTGCC+
dl_1#MA0022.120.01267456.033060.79704210GTAACGCCCCCGGAAAAACCCC-
Pax5#MA0014.120.01282026.102410.79704210GTAACGCCCCCCGCTACGCTTCAGTGCTCT-
CTCF#MA0139.1-10.01488057.08310.7970429GTAACGCCCCTAGCGCCCCCTGGTGGCCA-
RPN4#MA0373.1-40.01491127.097730.7970426GTAACGCCCCCGCCACC-
RELA#MA0107.100.01492987.106560.79704210GTAACGCCCCGGAAATTCCC-
SNT2#MA0384.120.01578827.515180.7970429GTAACGCCCCTGGTAGCGCCG+
MIZF#MA0131.1-10.01591147.573810.7970429GTAACGCCCCTAACGTCCGC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:11-GTAACGCCCC&oldid=2134443"