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MacroAPE 1083:8-WNHTTDCGTKTYW: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;686.836;400.954;125.86;584.35!2;426.126;528.612;505.238;338.024!3;562.774;478.268;273.296;485.46!4;1.798;1.798;542.996;1251.408!5;1.798;1.79...")
 
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048!10789-110H6;0.489434!10828-111C9;0.24431!10788-110H5;0.197225!10792-110H9;0.348658!10765-110E9;0.115744!10829-111D1;0.677149!10830-111D2;0.961479!10831-111D3;0.691448!10832-111D4;0.529203!10833-111D5;0.693495!10764-110E8;0.458744!10770-110F5;0.972988!10399-106A3;0.736472!10400-106A4;0.936244!10405-106A9;0.814511!10834-111D6;0.768701!10835-111D7;0.817693!10836-111D8;0.488187!10837-111D9;0.82302!10699-109G6;0.954758!10802-111A1;0.791474!10796-110I4;0.712703!10010-101C1;0.289977!10810-111A9;0.0428415!10421-106C7;0.859453!10708-109H6;0.334273!12235-129G3;0.0538134!12236-129G4;0.851687!12237-129G5;0.195261!10167-103B5;0.715958!10151-102I7;0.260835!10428-106D5;0.130749!10795-110I3;0.520873!10805-111A4;0.380443!10052-101G7;0.506241!10189-103D9;0.374388!10589-108D4;0.300255!10425-106D2;0.463698!10427-106D4;0.345484!10702-109G9;0.171456!10432-106D9;0.721712!10496-107C1;0.969118!10718-109I7;0.74086!10011-101C2;0.835998!10053-101G8;0.187422!10686-109F2;0.578353!10084-102B3;0.343618!10012-101C3;0.175884!10085-102B4;0.189548!10482-107A5;0.125211!10419-106C5;0.620397!10080-102A8;0.675075!10760-110E4;0.755444!10709-109H7;0.811325!10710-109H8;0.70965!10703-109H1;0.901928!10719-109I8;0.825611!10642-109A3;0.649765!10177-103C6;0.910309!10164-103B2;0.183943!10173-103C2;0.0997479!10166-103B4;0.0529465!10083-102B2;0.0885134!10188-103D8;0.0651326!10552-107I3;0.278453!10553-107I4;0.186384!10013-101C4;0.335042!10536-107G5;0.0442673!10618-108G6;0.662125!10423-106C9;0.155869!10785-110H2;0.111185!12238-129G6;0.0597318!12239-129G7;0.944304!12240-129G8;0.896517!10416-106C2;0.969194!10801-110I9;0.896154!10766-110F1;0.833985!10824-111C5;0.674025!10825-111C6;0.326977!10826-111C7;0.354172!10454-106G4;0.447825!10409-106B4;0.723076!10638-108I8;0.656061!10636-108I6;0.344565!10513-107D9;0.576869!10420-106C6;0.424914!10082-102B1;0.7917!10014-101C5;0.268539!10070-101I7;0.0863454!10452-106G2;0.116299!10453-106G3;0.159613!10449-106F8;0.222128!10042-101F6;0.359909!10069-101I6;0.139343!10193-103E4;0.0965122!10631-108I1;0.140975!10438-106E6;0.570376!10488-107B2;0.443175!10196-103E7;0.103223!10071-101I8;0.178868!10071-101I8;0.391979!10041-101F5;0.122865!10451-106G1;0.182931!10450-106F9;0.220071!10604-108F1;0.941214!10605-108F2;0.00955709!10606-108F3;0.0255725!10603-108E9;0.00906148!10497-107C2;0.131673!10448-106F7;0.89178!10643-109A4;0.848194!10426-106D3;0.681906!10431-106D8;0.466107!10197-103E8;0.357227!10443-106F2;0.0624579!10815-111B5;0.839576!10816-111B6;0.452317!10817-111B7;0.392527!10015-101C6;0.435476!10410-106B5;0.00427854!10054-101G9;0.905685!10758-110E2;0.0396927!10711-109H9;0.79175!10040-101F4;0.161959!10470-106I2;0.227253!10415-106C1;0.0700031!10198-103E9;0.944386!10614-108G2;0.127354!10612-108F9;0.900439!10549-107H9;0.825485!10615-108G3;0.747414!10487-107B1;0.138988!10433-106E1;0.230644!10688-109F4;0.240774!10444-106F3;0.263583!10444-106F3;0.695476!10485-107A8;0.934691!10413-106B8;1.2686e-08!10175-103C4;0.136369!10161-103A8;0.341223!12131-128D7;0.142138!10624-108H3;0.716284!10712-109I1;0.813354!10205-103F7;0.750943!10206-103F8;0.0597142!10207-103F9;0.201256!10050-101G5;0.574907!10051-101G6;0.294977!10016-101C7;0.152222!10046-101G1;0.0919138!10778-110G4;0.0391304!10633-108I3;0.777933!10818-111B8;0.29115!10819-111B9;0.196628!10820-111C1;0.267998!10484-107A7;0.236222!10808-111A7;0.559186!10169-103B7;0.890696!10153-102I9;0.230309!13425-144D5;0.124012!13433-144E4;0.899924!13437-144E8;0.955119!11904-125F5;0.893501!11905-125F6;0.0880231!10039-101F3;0.0325429!10791-110H8;0.241272!10017-101C8;0.86535!10045-101F9;0.0233683!10509-107D5;0.0798908!10839-111E2;0.667028!10692-109F8;0.273782!10079-102A7;0.0785571!10078-102A6;0.0586175!10721-110A1;0.356015!10569-108B2;0.272734!10570-108B3;0.513133!10571-108B4;0.896859!10647-109A8;0.753523!10752-110D5;0.931096!10782-110G8;0.36034!10726-110A6;0.419123!10018-101C9;0.00336476!10086-102B5;0.0719734!10182-103D2;0.549026!10165-103B3;0.258036!10499-107C4;0.128495!10408-106B3;0.310038!10019-101D1;0.612531!10068-101I5;0.31777!10075-102A3;0.253449!10077-102A5;0.873983!10727-110A7;0.439967!10775-110G1;0.331973!10412-106B7;0.954024!12231-129F8;0.834905!12232-129F9;0.745523!12233-129G1;0.888697!12234-129G2;0.627412!10414-106B9;0.878934!10170-103B8;0.810012!10183-103D3;0.29502!10150-102I6;0.271737!10174-103C3;0.146359!10155-103A2;0.0897831!10038-101F2;0.0715362!10838-111E1;0.159081!10759-110E3;0.354647!10514-107E1;0.567479!10465-106H6;0.183648!10691-109F7;2.0397e-07!10843-111E6;0.0220083!10844-111E7;0.508728!11747-123G1;0.754735!11748-123G2;0.458234!11749-123G3;0.349851!11750-123G4;0.259669!11751-123G5;0.110191!11840-124H4;0.653821!11752-123G6;0.0856826!11753-123G7;0.229167!11754-123G8;0.533271!11755-123G9;0.862331!11756-123H1;0.9009!11833-124G6;0.917628!11760-123H5;0.118499!11836-124G9;0.886126!11758-123H3;0.736372!11835-124G8;0.878629!11762-123H7;0.0138817!11838-124H2;0.550908!11757-123H2;0.308056!11759-123H4;0.843483!11761-123H6;0.734078!11842-124H6;0.951552!11837-124H1;0.484141!10568-108B1;0.16841!13230-141I8;0.907366!13231-141I9;0.393084!10696-109G3;0.564049!10493-107B7;0.710148!10494-107B8;0.000270682!10850-111F4;0.185795!10851-111F5;0.105766!10852-111F6;0.616196!10853-111F7;0.83622!10854-111F8;0.0952295!10855-111F9;0.821822!10856-111G1;0.494872!10847-111F1;0.871447!10846-111E9;0.40938!10848-111F2;0.596572!10845-111E8;0.132941!10857-111G2;0.919515!10858-111G3;0.181168!10156-103A3;0.0260718!11901-125F2;0.168981!11902-125F3;0.285106!11903-125F4;0.283773!10689-109F5;0.442553!10648-109A9;0.0215949!10784-110H1;0.484292!10744-110C6;0.769999!10772-110F7;0.25648!10474-106I6;0.759121!10600-108E6;0.310281!10684-109E9;0.221398!12226-129F3;0.175502!12227-129F4;0.838766!10508-107D4;0.0383896!10539-107G8;0.471413!10607-108F4;0.556493!10555-107I6;0.70441!10774-110F9;0.639248!10637-108I7;0.289491!10663-109C6;0.710358!10728-110A8;0.194229!10729-110A9;0.196836!10430-106D7;0.428527!10730-110B1;0.890162!10813-111B3;0.398479!10812-111B2;0.437123!10037-101F1;0.0729138!10172-103C1;0.210793!10163-103B1;0.213951!10076-102A4;0.147143!10073-102A1;0.197549!10036-101E9;0.191102!10195-103E6;0.236056!10277-104E7;0.209869!10434-106E2;0.772051!10550-107I1;0.954974!10545-107H5;0.821126!10544-107H4;0.391233!10704-109H2;0.162581!10510-107D6;0.448918!10558-107I9;0.278336!10020-101D2;0.120321!10732-110B3;0.133104!10049-101G4;0.404397!10698-109G5;0.461775!10437-106E5;0.220569!10417-106C3;0.276308!10035-101E8;0.476824!10171-103B9;0.279163!10157-103A4;0.418589!10034-101E7;0.146643!10072-101I9;0.25174!10199-103F1;0.219339!10200-103F2;0.0229637!10697-109G4;0.0395803!10723-110A3;0.760986!10179-103C8;0.347052!10160-103A7;0.414287!10180-103C9;0.134764!10162-103A9;0.43388!10021-101D3;0.421757!10840-111E3;0.740498!10706-109H4;0.339036!10033-101E6;0.258038!10032-101E5;0.182555!10490-107B4;0.236839!10439-106E7;0.767868!10022-101D4;0.707695!10176-103C5;0.0695088!10469-106I1;0.208187!10067-101I4;0.00939117!10411-106B6;0.228039!10471-106I3;0.978748!10030-101E3;0.292663!10475-106I7;0.13095!10787-110H4;0.649666!10477-106I9;0.591072!10695-109G2;0.760184!11771-123I7;0.486518!11772-123I8;0.29285!11773-123I9;0.485939!10093-102C3;0.412343!10442-106F1;0.0368395!10442-106F1;0.646357!10201-103F3;0.906662!10639-108I9;0.56385!11843-124H7;0.0790627!11841-124H5;0.267124!10693-109F9;0.511696!10436-106E4;0.926394!10483-107A6;0.259806!10282-104F3;0.669625!10023-101D5;0.0124265!10066-101I3;0.000753379!10065-101I2;0.0435094!10800-110I8;0.103514!10610-108F7;0.624255!10841-111E4;0.512364!10541-107H1;0.870019!10842-111E5;0.790223!10562-108A4;0.742574!10024-101D6;0.0578006!10064-101I1;0.312237!10609-108F6;0.398199!10048-101G3;0.327653!10781-110G7;0.404869!10181-103D1;0.607609!10159-103A6;0.17904!10056-101H2;0.0606574!10737-110B8;0.227264!10025-101D7;0.166633!10044-101F8;0.129882!10424-106D1;0.0897923!10463-106H4;0.365749!10616-108G4;0.916563!10486-107A9;0.815906!10062-101H8;0.467771!10202-103F4;0.284594!10158-103A5;0.00204282!10441-106E9;0.0552498!10031-101E4;0.284747!10063-101H9;0.239467!10063-101H9;0.131769!11763-123H8;0.0702136!11765-123I1;0.850286!11768-123I4;0.442424!10807-111A6;0.90879!10790-110H7;0.819793!10798-110I6;0.545658!10786-110H3;0.0385881!10591-108D6;0.734642!10593-108D8;0.926207!10590-108D5;0.718133!10026-101D8;0.657429!10096-102C6;0.119003!10168-103B6;0.970379!10154-103A1;0.25435!10209-103G2;0.113506!10061-101H7;0.00172594!10027-101D9;0.0394945!10043-101F7;0.174877!10783-110G9;0.0280083!10028-101E1;0.944304!10060-101H6;0.31887!10203-103F5;0.888944!10059-101H5;0.00278733!10047-101G2;0.0151685!10029-101E2;0.0015541!10058-101H4;0.0161995!10418-106C4;0.0122631!10492-107B6;0.160524!10694-109G1;0.00536929!10797-110I5;0.269264!10057-101H3;0.82848!10100-102D1;0.507572!10055-101H1;0.178937!10204-103F6;0.180409!10191-103E2;0.151086!10563-108A5;0.0113045
|name=8-WNHTTDCGTKTYW,CNhs13470,BestGuess:T1ISRE(IRF)/Ifnb-Exp/Homer(0.717941401253572),T:1798.0(27.81%),B:8619.3(20.22%),P:1e-47
|name=8-WNHTTDCGTKTYW,CNhs13470,BestGuess:T1ISRE(IRF)/Ifnb-Exp/Homer(0.717941401253572),T:1798.0(27.81%),B:8619.3(20.22%),P:1e-47
|tomtom_result=NDT80#MA0343.1;-3;0.00483729;2.30255;0.904302;10;ACATTTCGTTTCT;TTGCGTTTTTGTGGCCGGAAA;-!YAP3#MA0416.1;-2;0.00530397;2.52469;0.904302;8;ACATTTCGTTTCT;ATTACGTA;+!squamosa#MA0082.1;-2;0.00597669;2.8449;0.904302;11;ACATTTCGTTTCT;ATTTCCATTTTTGG;-!HLF#MA0043.1;-1;0.00602541;2.8681;0.904302;12;ACATTTCGTTTCT;TATTACGTAACC;-!HMG-I/Y#MA0045.1;1;0.00652815;3.1074;0.904302;13;ACATTTCGTTTCT;GTTTTTCCATTTGTTG;-!SWI4#MA0401.1;-3;0.0066355;3.1585;0.904302;8;ACATTTCGTTTCT;TTTCGCGT;-!FHL1#MA0295.1;-2;0.00948606;4.51537;0.904302;8;ACATTTCGTTTCT;TTTGCGTC;-!MBP1#MA0329.1;-4;0.0119013;5.66501;0.904302;7;ACATTTCGTTTCT;TACGCGT;-!CST6#MA0286.1;-2;0.0121524;5.78454;0.904302;9;ACATTTCGTTTCT;ATGACGTAA;+!AZF1#MA0277.1;-3;0.0129622;6.17003;0.904302;9;ACATTTCGTTTCT;TTTCTTTTT;-!RUNX1#MA0002.2;0;0.0154282;7.34381;0.904302;11;ACATTTCGTTTCT;GTCTGTGGTTT;+!br_Z3#MA0012.1;-1;0.0163778;7.79581;0.904302;11;ACATTTCGTTTCT;CTTTTAGTTTA;-!bZIP910#MA0096.1;-2;0.017895;8.518;0.904302;7;ACATTTCGTTTCT;CTGACGT;+!IRF1#MA0050.1;-1;0.0182494;8.68671;0.904302;12;ACATTTCGTTTCT;GGTTTCACTTTC;-!ABF1#MA0265.1;-2;0.0194987;9.2814;0.904302;11;ACATTTCGTTTCT;ATATCACTTTATACGA;-!id1#MA0120.1;-3;0.0204825;9.74967;0.904302;10;ACATTTCGTTTCT;TTTTCCTTTTCG;+
}}
}}

Latest revision as of 14:41, 7 September 2012

Full Name: 8-WNHTTDCGTKTYW,CNhs13470,BestGuess:T1ISRE(IRF)/Ifnb-Exp/Homer(0.717941401253572),T:1798.0(27.81%),B:8619.3(20.22%),P:1e-47

Motif matrix
POACGT
1686.836400.954125.86584.35
2426.126528.612505.238338.024
3562.774478.268273.296485.46
41.7981.798542.9961251.408
51.7981.798631.0981163.306
6496.2481.798614.916685.038
71.7981792.6061.7981.798
81.7981.7981792.6061.798
9169.012451.2981.7981175.892
10195.982338.024507.036756.958
11381.1761.798282.2861132.74
12190.588859.4441.798746.17
13719.284.50691.698902.596

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NDT80#MA0343.1-30.004837292.302550.90430210ACATTTCGTTTCTTTGCGTTTTTGTGGCCGGAAA-
YAP3#MA0416.1-20.005303972.524690.9043028ACATTTCGTTTCTATTACGTA+
squamosa#MA0082.1-20.005976692.84490.90430211ACATTTCGTTTCTATTTCCATTTTTGG-
HLF#MA0043.1-10.006025412.86810.90430212ACATTTCGTTTCTTATTACGTAACC-
HMG-I/Y#MA0045.110.006528153.10740.90430213ACATTTCGTTTCTGTTTTTCCATTTGTTG-
SWI4#MA0401.1-30.00663553.15850.9043028ACATTTCGTTTCTTTTCGCGT-
FHL1#MA0295.1-20.009486064.515370.9043028ACATTTCGTTTCTTTTGCGTC-
MBP1#MA0329.1-40.01190135.665010.9043027ACATTTCGTTTCTTACGCGT-
CST6#MA0286.1-20.01215245.784540.9043029ACATTTCGTTTCTATGACGTAA+
AZF1#MA0277.1-30.01296226.170030.9043029ACATTTCGTTTCTTTTCTTTTT-
RUNX1#MA0002.200.01542827.343810.90430211ACATTTCGTTTCTGTCTGTGGTTT+
br_Z3#MA0012.1-10.01637787.795810.90430211ACATTTCGTTTCTCTTTTAGTTTA-
bZIP910#MA0096.1-20.0178958.5180.9043027ACATTTCGTTTCTCTGACGT+
IRF1#MA0050.1-10.01824948.686710.90430212ACATTTCGTTTCTGGTTTCACTTTC-
ABF1#MA0265.1-20.01949879.28140.90430211ACATTTCGTTTCTATATCACTTTATACGA-
id1#MA0120.1-30.02048259.749670.90430210ACATTTCGTTTCTTTTTCCTTTTCG+
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