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MacroAPE 1083:11-WACGYACGTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;449.628;0.842;61.466;330.064!2;680.336;6.736;154.086;0.842!3;292.174;440.366;56.414;53.046!4;148.192;184.398;438.682;70.728!5;117.88;272.808...")
 
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2183-129A5;0.705699!12184-129A6;0.523934!10809-111A8;0.787266!10597-108E3;0.594432!10717-109I6;0.178686!10455-106G5;0.215209!10534-107G3;0.197658!10429-106D6;0.00493047!10464-106H5;0.248892!10827-111C8;0.106885!10789-110H6;0.590742!10828-111C9;0.502974!10788-110H5;0.0870014!10792-110H9;0.0356494!10765-110E9;0.648947!10829-111D1;0.148432!10830-111D2;0.0846072!10831-111D3;0.786358!10832-111D4;0.249601!10833-111D5;0.0947363!10764-110E8;0.105208!10770-110F5;0.164824!10399-106A3;0.095901!10400-106A4;0.0959436!10405-106A9;0.114772!10834-111D6;0.0840573!10835-111D7;0.0836493!10836-111D8;0.044167!10837-111D9;0.38301!10699-109G6;0.194963!10802-111A1;0.303461!10796-110I4;0.454431!10010-101C1;0.0355285!10810-111A9;0.246842!10421-106C7;0.359351!10708-109H6;0.420886!12235-129G3;0.182131!12236-129G4;0.663308!12237-129G5;0.0610682!10167-103B5;0.939346!10151-102I7;0.830293!10428-106D5;0.695588!10795-110I3;0.178193!10805-111A4;0.0619283!10052-101G7;0.3864!10189-103D9;0.407307!10589-108D4;0.595415!10425-106D2;0.147543!10427-106D4;0.535706!10702-109G9;0.14105!10432-106D9;1.82098e-05!10496-107C1;0.000545539!10718-109I7;0.179013!10011-101C2;0.197849!10053-101G8;0.450148!10686-109F2;0.486621!10084-102B3;0.58056!10012-101C3;0.518724!10085-102B4;0.243665!10482-107A5;0.291874!10419-106C5;0.124275!10080-102A8;0.277535!10760-110E4;0.853983!10709-109H7;0.0198013!10710-109H8;0.158894!10703-109H1;0.0820589!10719-109I8;0.0165542!10642-109A3;0.0522883!10177-103C6;0.0461895!10164-103B2;0.802997!10173-103C2;0.98286!10166-103B4;0.918495!10083-102B2;0.717658!10188-103D8;0.684585!10552-107I3;0.317116!10553-107I4;0.112673!10013-101C4;0.0357276!10536-107G5;0.245842!10618-108G6;0.548305!10423-106C9;0.0977482!10785-110H2;0.405896!12238-129G6;0.307339!12239-129G7;0.631734!12240-129G8;0.0133803!10416-106C2;0.50555!10801-110I9;0.112265!10766-110F1;0.0979532!10824-111C5;0.0109708!10825-111C6;0.467989!10826-111C7;0.39641!10454-106G4;0.414156!10409-106B4;0.381281!10638-108I8;0.0360901!10636-108I6;0.265488!10513-107D9;0.240396!10420-106C6;0.333613!10082-102B1;0.0485546!10014-101C5;0.6688!10070-101I7;0.306542!10452-106G2;0.594114!10453-106G3;0.25506!10449-106F8;0.557108!10042-101F6;0.532019!10069-101I6;0.590189!10193-103E4;0.0319524!10631-108I1;0.716641!10438-106E6;0.0161032!10488-107B2;0.00749869!10196-103E7;0.135876!10071-101I8;0.51111!10071-101I8;0.567517!10041-101F5;0.395742!10451-106G1;0.322287!10450-106F9;0.295349!10604-108F1;0.176634!10605-108F2;0.194577!10606-108F3;0.175181!10603-108E9;0.189963!10497-107C2;0.26271!10448-106F7;0.864534!10643-109A4;0.804832!10426-106D3;0.908645!10431-106D8;0.071019!10197-103E8;0.179844!10443-106F2;0.0326264!10815-111B5;0.127449!10816-111B6;0.0488882!10817-111B7;0.0204037!10015-101C6;0.03895!10410-106B5;0.0955021!10054-101G9;0.186236!10758-110E2;0.276304!10711-109H9;0.282805!10040-101F4;0.149686!10470-106I2;0.550695!10415-106C1;0.00449319!10198-103E9;0.454036!10614-108G2;0.227387!10612-108F9;0.8086!10549-107H9;0.0033897!10615-108G3;0.795451!10487-107B1;0.0324633!10433-106E1;0.0178319!10688-109F4;0.119373!10444-106F3;0.0691646!10444-106F3;0.767652!10485-107A8;0.674435!10413-106B8;0.379798!10175-103C4;0.382039!10161-103A8;0.780393!12131-128D7;0.896535!10624-108H3;0.000440301!10712-109I1;0.4591!10205-103F7;0.288711!10206-103F8;0.0335477!10207-103F9;0.0389146!10050-101G5;0.891135!10051-101G6;0.270866!10016-101C7;0.035651!10046-101G1;0.0463766!10778-110G4;0.154549!10633-108I3;0.0617784!10818-111B8;0.0545525!10819-111B9;0.433959!10820-111C1;0.438756!10484-107A7;0.326196!10808-111A7;0.50492!10169-103B7;0.114754!10153-102I9;0.597133!13425-144D5;0.589277!13433-144E4;0.791048!13437-144E8;0.875671!11904-125F5;0.687351!11905-125F6;0.0146868!10039-101F3;0.0985846!10791-110H8;0.492176!10017-101C8;0.775455!10045-101F9;0.457389!10509-107D5;0.865635!10839-111E2;0.0510404!10692-109F8;0.269843!10079-102A7;0.138003!10078-102A6;0.0152875!10721-110A1;0.0238159!10569-108B2;0.0702021!10570-108B3;0.000185837!10571-108B4;0.00538454!10647-109A8;0.00139023!10752-110D5;0.167357!10782-110G8;0.0975044!10726-110A6;0.235294!10018-101C9;0.751831!10086-102B5;0.709693!10182-103D2;0.914012!10165-103B3;0.418733!10499-107C4;0.790509!10408-106B3;0.0394833!10019-101D1;0.0445793!10068-101I5;0.741141!10075-102A3;0.501895!10077-102A5;0.830749!10727-110A7;0.945381!10775-110G1;0.45633!10412-106B7;0.119647!12231-129F8;0.113788!12232-129F9;0.416269!12233-129G1;0.170564!12234-129G2;0.00841323!10414-106B9;0.428748!10170-103B8;0.0127331!10183-103D3;0.637358!10150-102I6;0.380707!10174-103C3;0.48239!10155-103A2;0.324392!10038-101F2;0.523313!10838-111E1;0.405981!10759-110E3;0.0655165!10514-107E1;0.153575!10465-106H6;0.0641922!10691-109F7;0.0424887!10843-111E6;0.447446!10844-111E7;0.434522!11747-123G1;0.0645429!11748-123G2;0.0996764!11749-123G3;0.0803364!11750-123G4;0.0607971!11751-123G5;0.327905!11840-124H4;0.015929!11752-123G6;0.0019786!11753-123G7;0.135383!11754-123G8;0.255191!11755-123G9;0.585484!11756-123H1;0.972695!11833-124G6;0.393869!11760-123H5;0.797459!11836-124G9;0.537383!11758-123H3;0.221965!11835-124G8;0.0688353!11762-123H7;0.0612955!11838-124H2;0.0758816!11757-123H2;0.0141597!11759-123H4;0.685294!11761-123H6;0.706754!11842-124H6;0.503298!11837-124H1;0.130693!10568-108B1;0.0392039!13230-141I8;0.131002!13231-141I9;0.00744788!10696-109G3;0.00511573!10493-107B7;0.297175!10494-107B8;0.238226!10850-111F4;0.71621!10851-111F5;0.757756!10852-111F6;0.84486!10853-111F7;0.542457!10854-111F8;0.489899!10855-111F9;0.346092!10856-111G1;0.148298!10847-111F1;0.331153!10846-111E9;0.899364!10848-111F2;0.965187!10845-111E8;0.664137!10857-111G2;0.825276!10858-111G3;0.517943!10156-103A3;0.67114!11901-125F2;0.560111!11902-125F3;0.0685675!11903-125F4;0.116892!10689-109F5;0.0932393!10648-109A9;0.118104!10784-110H1;0.619436!10744-110C6;0.00692115!10772-110F7;0.416303!10474-106I6;0.0672348!10600-108E6;0.709069!10684-109E9;0.842859!12226-129F3;0.912475!12227-129F4;0.138645!10508-107D4;0.094887!10539-107G8;0.181575!10607-108F4;0.522096!10555-107I6;0.167155!10774-110F9;0.166682!10637-108I7;0.295745!10663-109C6;0.0296519!10728-110A8;0.0970658!10729-110A9;0.057808!10430-106D7;0.138309!10730-110B1;0.0161611!10813-111B3;0.807502!10812-111B2;0.0178757!10037-101F1;0.000502369!10172-103C1;0.655861!10163-103B1;0.638048!10076-102A4;0.612416!10073-102A1;0.480672!10036-101E9;0.509526!10195-103E6;0.451719!10277-104E7;0.50157!10434-106E2;0.88675!10550-107I1;0.060142!10545-107H5;0.166998!10544-107H4;0.419192!10704-109H2;0.427433!10510-107D6;0.338779!10558-107I9;0.0325979!10020-101D2;0.0331329!10732-110B3;0.788782!10049-101G4;0.717804!10698-109G5;0.964185!10437-106E5;0.120459!10417-106C3;0.18311!10035-101E8;0.0414334!10171-103B9;0.57899!10157-103A4;0.418379!10034-101E7;0.627683!10072-101I9;0.544343!10199-103F1;0.865968!10200-103F2;0.272908!10697-109G4;0.0534359!10723-110A3;0.196568!10179-103C8;0.722286!10160-103A7;0.210326!10180-103C9;0.51879!10162-103A9;0.916447!10021-101D3;0.843974!10840-111E3;0.342116!10706-109H4;0.115548!10033-101E6;0.893875!10032-101E5;0.460732!10490-107B4;0.378817!10439-106E7;0.276357!10022-101D4;0.0163752!10176-103C5;0.553638!10469-106I1;0.944207!10067-101I4;0.00748843!10411-106B6;0.433889!10471-106I3;0.795326!10030-101E3;0.106271!10475-106I7;0.339889!10787-110H4;0.294954!10477-106I9;0.111308!10695-109G2;0.200273!11771-123I7;0.269576!11772-123I8;0.945483!11773-123I9;0.455102!10093-102C3;0.630614!10442-106F1;0.938271!10442-106F1;0.0720933!10201-103F3;0.0813784!10639-108I9;0.48518!11843-124H7;0.617864!11841-124H5;0.685831!10693-109F9;0.825378!10436-106E4;0.109141!10483-107A6;0.393286!10282-104F3;0.0722654!10023-101D5;0.484547!10066-101I3;0.0988535!10065-101I2;0.00572041!10800-110I8;0.0395262!10610-108F7;0.0205321!10841-111E4;0.149695!10541-107H1;0.410242!10842-111E5;0.105194!10562-108A4;0.164531!10024-101D6;0.162143!10064-101I1;0.253521!10609-108F6;0.15977!10048-101G3;0.0652459!10781-110G7;0.117164!10181-103D1;0.837593!10159-103A6;0.342426!10056-101H2;0.923455!10737-110B8;0.0813851!10025-101D7;0.358868!10044-101F8;0.857124!10424-106D1;0.800984!10463-106H4;0.16644!10616-108G4;0.22661!10486-107A9;0.324649!10062-101H8;0.0338894!10202-103F4;0.426552!10158-103A5;0.231482!10441-106E9;0.996369!10031-101E4;0.19471!10063-101H9;0.361286!10063-101H9;0.467904!11763-123H8;0.274628!11765-123I1;1.6269e-05!11768-123I4;0.000347364!10807-111A6;0.000111785!10790-110H7;0.580519!10798-110I6;0.536227!10786-110H3;0.306506!10591-108D6;0.240734!10593-108D8;0.0601066!10590-108D5;0.0180703!10026-101D8;0.131989!10096-102C6;0.0773324!10168-103B6;0.390629!10154-103A1;0.689102!10209-103G2;0.90118!10061-101H7;0.106685!10027-101D9;0.0536759!10043-101F7;0.132442!10783-110G9;0.204965!10028-101E1;0.279565!10060-101H6;0.437687!10203-103F5;0.187807!10059-101H5;0.104968!10047-101G2;0.052038!10029-101E2;0.940864!10058-101H4;0.826811!10418-106C4;0.266166!10492-107B6;0.0594081!10694-109G1;0.0961985!10797-110I5;0.796864!10057-101H3;0.271768!10100-102D1;0.23725!10055-101H1;0.64809!10204-103F6;0.164058!10191-103E2;0.507183!10563-108A5;0.240143
|name=11-WACGYACGTG,CNhs12343,BestGuess:ARNT_f1_HM09(0.704807301786755),T:842.0(24.82%),B:7417.0(16.81%),P:1e-31
|name=11-WACGYACGTG,CNhs12343,BestGuess:ARNT_f1_HM09(0.704807301786755),T:842.0(24.82%),B:7417.0(16.81%),P:1e-31
|tomtom_result=HIF1A::ARNT#MA0259.1;-3;0.000322569;0.153543;0.292404;7;AACGTACGTG;GGACGTGC;+!RTG3#MA0376.1;3;0.000802299;0.381894;0.292404;10;AACGTACGTG;GACTAAGCACGTGCTAATAT;-!Myc#MA0147.1;-2;0.000932804;0.444015;0.292404;8;AACGTACGTG;CGCACGTGGC;+!Mycn#MA0104.2;-2;0.00125079;0.595376;0.294062;8;AACGTACGTG;CGCACGTGGC;+!MYC::MAX#MA0059.1;-1;0.00193426;0.920709;0.34397;9;AACGTACGTG;GAGCACGTGGT;+!CBF1#MA0281.1;-3;0.00329735;1.56954;0.34397;7;AACGTACGTG;GCACGTGA;+!PHO4#MA0357.1;-3;0.00329735;1.56954;0.34397;7;AACGTACGTG;GCACGTGC;+!YGR067C#MA0425.1;0;0.00370234;1.76231;0.34397;10;AACGTACGTG;TGAAAAAGTGGGGT;-!Arnt#MA0004.1;-4;0.00400267;1.90527;0.34397;6;AACGTACGTG;CACGTG;+!Mycn#MA0104.2;-4;0.00443858;2.11276;0.34397;6;AACGTACGTG;CACGTG;-!MIZF#MA0131.1;1;0.0061935;2.94811;0.34397;9;AACGTACGTG;TAACGTCCGC;+!Arnt::Ahr#MA0006.1;-4;0.00645296;3.07161;0.34397;6;AACGTACGTG;TGCGTG;+!RSC3#MA0374.1;-3;0.00653409;3.11023;0.34397;7;AACGTACGTG;CCGCGCG;-!MAX#MA0058.1;-1;0.00658383;3.1339;0.34397;9;AACGTACGTG;AACCACGTGA;+!HAC1#MA0310.1;-4;0.00851277;4.05208;0.411028;6;AACGTACGTG;CACGTGTC;-!TBP#MA0108.2;5;0.00917859;4.36901;0.411028;10;AACGTACGTG;GTATAAAAGGCGGGG;+!TBP#MA0108.2;5;0.00917859;4.36901;0.411028;10;AACGTACGTG;GTATAAAAGGCGGGG;+!USF1#MA0093.1;-3;0.0109363;5.2057;0.447662;7;AACGTACGTG;CCACGTG;-!RSC30#MA0375.1;-2;0.011696;5.56732;0.447662;8;AACGTACGTG;CGCGCGCG;+!DAL82#MA0291.1;0;0.0119008;5.66478;0.447662;9;AACGTACGTG;AATGTGCGC;+!twi#MA0249.1;1;0.0150835;7.17974;0.527858;10;AACGTACGTG;CAACATATGCGA;-!h#MA0449.1;-2;0.0157167;7.48114;0.527858;8;AACGTACGTG;GGCACGTGCC;+!TYE7#MA0409.1;-4;0.0177434;8.44585;0.545855;6;AACGTACGTG;CACGTGA;+!TEA1#MA0405.1;-1;0.0179939;8.56508;0.545855;8;AACGTACGTG;ATGCCCGC;-
}}
}}

Latest revision as of 14:43, 7 September 2012

Full Name: 11-WACGYACGTG,CNhs12343,BestGuess:ARNT_f1_HM09(0.704807301786755),T:842.0(24.82%),B:7417.0(16.81%),P:1e-31

Motif matrix
POACGT
1449.6280.84261.466330.064
2680.3366.736154.0860.842
3292.174440.36656.41453.046
4148.192184.398438.68270.728
5117.88272.808147.35304.804
6471.52100.198269.440.842
7117.88639.921.68482.516
80.8426.736772.11462.308
9131.352223.97246.31440.366
100.842275.334543.93221.892

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HIF1A::ARNT#MA0259.1-30.0003225690.1535430.2924047AACGTACGTGGGACGTGC+
RTG3#MA0376.130.0008022990.3818940.29240410AACGTACGTGGACTAAGCACGTGCTAATAT-
Myc#MA0147.1-20.0009328040.4440150.2924048AACGTACGTGCGCACGTGGC+
Mycn#MA0104.2-20.001250790.5953760.2940628AACGTACGTGCGCACGTGGC+
MYC::MAX#MA0059.1-10.001934260.9207090.343979AACGTACGTGGAGCACGTGGT+
CBF1#MA0281.1-30.003297351.569540.343977AACGTACGTGGCACGTGA+
PHO4#MA0357.1-30.003297351.569540.343977AACGTACGTGGCACGTGC+
YGR067C#MA0425.100.003702341.762310.3439710AACGTACGTGTGAAAAAGTGGGGT-
Arnt#MA0004.1-40.004002671.905270.343976AACGTACGTGCACGTG+
Mycn#MA0104.2-40.004438582.112760.343976AACGTACGTGCACGTG-
MIZF#MA0131.110.00619352.948110.343979AACGTACGTGTAACGTCCGC+
Arnt::Ahr#MA0006.1-40.006452963.071610.343976AACGTACGTGTGCGTG+
RSC3#MA0374.1-30.006534093.110230.343977AACGTACGTGCCGCGCG-
MAX#MA0058.1-10.006583833.13390.343979AACGTACGTGAACCACGTGA+
HAC1#MA0310.1-40.008512774.052080.4110286AACGTACGTGCACGTGTC-
TBP#MA0108.250.009178594.369010.41102810AACGTACGTGGTATAAAAGGCGGGG+
TBP#MA0108.250.009178594.369010.41102810AACGTACGTGGTATAAAAGGCGGGG+
USF1#MA0093.1-30.01093635.20570.4476627AACGTACGTGCCACGTG-
RSC30#MA0375.1-20.0116965.567320.4476628AACGTACGTGCGCGCGCG+
DAL82#MA0291.100.01190085.664780.4476629AACGTACGTGAATGTGCGC+
twi#MA0249.110.01508357.179740.52785810AACGTACGTGCAACATATGCGA-
h#MA0449.1-20.01571677.481140.5278588AACGTACGTGGGCACGTGCC+
TYE7#MA0409.1-40.01774348.445850.5458556AACGTACGTGCACGTGA+
TEA1#MA0405.1-10.01799398.565080.5458558AACGTACGTGATGCCCGC-
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