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MacroAPE 1083:11-TSACGCSTCAGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;322.63;2.933;2.933;2604.504!2;2.933;1299.319;1627.815;2.933!3;2924.201;2.933;2.933;2.933!4;2.933;2924.201;2.933;2.933!5;2.933;2.933;2924.201...")
 
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10828-111C9;0.859315!10788-110H5;0.146167!10792-110H9;0.19815!10765-110E9;0.313498!10829-111D1;0.381144!10830-111D2;0.861191!10831-111D3;0.578295!10832-111D4;0.752643!10833-111D5;0.52588!10764-110E8;0.948035!10770-110F5;0.820893!10399-106A3;0.866039!10400-106A4;0.488563!10405-106A9;0.668041!10834-111D6;0.389845!10835-111D7;0.737736!10836-111D8;0.0238289!10837-111D9;0.551584!10699-109G6;0.920886!10802-111A1;0.486909!10796-110I4;0.905464!10010-101C1;0.978739!10810-111A9;0.0476353!10421-106C7;0.171974!10708-109H6;0.890093!12235-129G3;0.184115!12236-129G4;0.0972358!12237-129G5;0.683647!10167-103B5;0.0785!10151-102I7;0.96508!10428-106D5;0.402478!10795-110I3;0.577477!10805-111A4;0.373!10052-101G7;0.718396!10189-103D9;0.241902!10589-108D4;0.297688!10425-106D2;0.0274455!10427-106D4;0.0529624!10702-109G9;0.172306!10432-106D9;0.579469!10496-107C1;0.382149!10718-109I7;0.362872!10011-101C2;0.700311!10053-101G8;0.151556!10686-109F2;0.811068!10084-102B3;0.989939!10012-101C3;0.921874!10085-102B4;0.837882!10482-107A5;0.196698!10419-106C5;0.954916!10080-102A8;0.117834!10760-110E4;0.102046!10709-109H7;0.371966!10710-109H8;0.870772!10703-109H1;0.840188!10719-109I8;0.624577!10642-109A3;0.0993942!10177-103C6;0.606059!10164-103B2;0.963757!10173-103C2;0.745542!10166-103B4;0.550175!10083-102B2;0.483972!10188-103D8;0.631312!10552-107I3;0.978276!10553-107I4;0.176148!10013-101C4;0.445392!10536-107G5;0.187404!10618-108G6;0.516989!10423-106C9;0.213549!10785-110H2;0.916677!12238-129G6;0.775984!12239-129G7;0.338625!12240-129G8;0.687586!10416-106C2;0.491924!10801-110I9;0.919623!10766-110F1;0.0692336!10824-111C5;0.649324!10825-111C6;0.202064!10826-111C7;0.0834559!10454-106G4;0.0783916!10409-106B4;0.0779414!10638-108I8;0.322527!10636-108I6;0.987787!10513-107D9;0.71433!10420-106C6;0.5213!10082-102B1;0.744207!10014-101C5;0.428854!10070-101I7;0.122297!10452-106G2;0.425044!10453-106G3;0.121313!10449-106F8;0.42179!10042-101F6;0.444491!10069-101I6;0.412158!10193-103E4;0.28713!10631-108I1;0.836825!10438-106E6;0.333488!10488-107B2;0.959725!10196-103E7;0.00467605!10071-101I8;0.793025!10071-101I8;0.99204!10041-101F5;0.425412!10451-106G1;0.109332!10450-106F9;0.0724186!10604-108F1;0.247575!10605-108F2;0.643102!10606-108F3;0.886617!10603-108E9;0.482218!10497-107C2;0.980395!10448-106F7;0.605653!10643-109A4;0.24684!10426-106D3;0.617929!10431-106D8;0.242828!10197-103E8;0.276538!10443-106F2;0.360992!10815-111B5;0.943477!10816-111B6;0.579703!10817-111B7;0.909031!10015-101C6;0.61971!10410-106B5;0.0488758!10054-101G9;0.639682!10758-110E2;0.650689!10711-109H9;0.590718!10040-101F4;0.896702!10470-106I2;0.919836!10415-106C1;0.211721!10198-103E9;0.326134!10614-108G2;0.0502502!10612-108F9;0.242365!10549-107H9;0.270876!10615-108G3;0.830493!10487-107B1;9.91549e-05!10433-106E1;0.755175!10688-109F4;0.796847!10444-106F3;0.150686!10444-106F3;0.543712!10485-107A8;0.508305!10413-106B8;0.130124!10175-103C4;0.414222!10161-103A8;0.980985!12131-128D7;0.223673!10624-108H3;0.184038!10712-109I1;0.6886!10205-103F7;0.149162!10206-103F8;0.276846!10207-103F9;0.0503209!10050-101G5;0.134232!10051-101G6;0.273735!10016-101C7;0.317593!10046-101G1;0.132757!10778-110G4;0.371512!10633-108I3;0.928549!10818-111B8;0.783918!10819-111B9;0.135307!10820-111C1;0.200179!10484-107A7;0.182491!10808-111A7;0.605003!10169-103B7;0.674387!10153-102I9;0.82811!13425-144D5;0.33403!13433-144E4;0.737305!13437-144E8;0.52361!11904-125F5;0.397309!11905-125F6;0.330496!10039-101F3;0.582866!10791-110H8;0.893207!10017-101C8;0.691673!10045-101F9;0.0390586!10509-107D5;0.635341!10839-111E2;0.980558!10692-109F8;0.410501!10079-102A7;0.252137!10078-102A6;0.169094!10721-110A1;0.251853!10569-108B2;0.43496!10570-108B3;0.85397!10571-108B4;0.814204!10647-109A8;0.809812!10752-110D5;0.998972!10782-110G8;0.905896!10726-110A6;0.646513!10018-101C9;0.108243!10086-102B5;0.803192!10182-103D2;0.825783!10165-103B3;0.871699!10499-107C4;0.948507!10408-106B3;0.639263!10019-101D1;0.101273!10068-101I5;0.00792043!10075-102A3;0.0466406!10077-102A5;0.0168785!10727-110A7;0.654383!10775-110G1;0.103822!10412-106B7;0.578391!12231-129F8;0.0139056!12232-129F9;0.794668!12233-129G1;0.311458!12234-129G2;0.299464!10414-106B9;0.409965!10170-103B8;0.508705!10183-103D3;0.778882!10150-102I6;0.770953!10174-103C3;0.647681!10155-103A2;0.870536!10038-101F2;0.506852!10838-111E1;0.54111!10759-110E3;0.451133!10514-107E1;0.456998!10465-106H6;0.635153!10691-109F7;0.415728!10843-111E6;0.637359!10844-111E7;0.336982!11747-123G1;0.885114!11748-123G2;0.988204!11749-123G3;0.869009!11750-123G4;0.777254!11751-123G5;0.962783!11840-124H4;0.56!11752-123G6;0.963276!11753-123G7;0.764715!11754-123G8;0.796452!11755-123G9;0.576652!11756-123H1;0.935394!11833-124G6;0.869048!11760-123H5;0.840467!11836-124G9;0.86537!11758-123H3;0.731345!11835-124G8;0.800641!11762-123H7;0.854372!11838-124H2;0.765109!11757-123H2;0.388371!11759-123H4;0.521177!11761-123H6;0.787744!11842-124H6;0.650976!11837-124H1;0.695826!10568-108B1;0.483553!13230-141I8;0.0438832!13231-141I9;0.932122!10696-109G3;0.85766!10493-107B7;0.82983!10494-107B8;0.550535!10850-111F4;0.698278!10851-111F5;0.693957!10852-111F6;0.364583!10853-111F7;0.772872!10854-111F8;0.222034!10855-111F9;0.566915!10856-111G1;0.928237!10847-111F1;0.299867!10846-111E9;0.614787!10848-111F2;0.155105!10845-111E8;0.441362!10857-111G2;0.675986!10858-111G3;0.787436!10156-103A3;0.423986!11901-125F2;0.573027!11902-125F3;0.68384!11903-125F4;0.835654!10689-109F5;0.968617!10648-109A9;0.550665!10784-110H1;0.843266!10744-110C6;0.436662!10772-110F7;0.55147!10474-106I6;0.939936!10600-108E6;0.98163!10684-109E9;0.818993!12226-129F3;0.186048!12227-129F4;0.136087!10508-107D4;0.119171!10539-107G8;0.106357!10607-108F4;0.0973838!10555-107I6;0.0642629!10774-110F9;0.0306359!10637-108I7;0.246486!10663-109C6;0.0286849!10728-110A8;0.0371197!10729-110A9;0.378809!10430-106D7;0.845813!10730-110B1;0.314394!10813-111B3;0.0059165!10812-111B2;0.0252709!10037-101F1;0.659409!10172-103C1;0.758887!10163-103B1;0.931701!10076-102A4;0.383942!10073-102A1;0.942156!10036-101E9;0.317208!10195-103E6;0.949357!10277-104E7;0.705777!10434-106E2;0.401218!10550-107I1;0.521695!10545-107H5;0.695648!10544-107H4;0.200305!10704-109H2;0.331763!10510-107D6;0.931474!10558-107I9;0.610768!10020-101D2;0.609072!10732-110B3;0.481051!10049-101G4;0.533455!10698-109G5;0.483112!10437-106E5;0.847103!10417-106C3;0.81702!10035-101E8;0.319653!10171-103B9;0.951651!10157-103A4;0.841815!10034-101E7;0.850508!10072-101I9;0.981174!10199-103F1;0.282912!10200-103F2;0.0852981!10697-109G4;0.0931581!10723-110A3;0.0228958!10179-103C8;0.249436!10160-103A7;0.451785!10180-103C9;0.94022!10162-103A9;0.0254645!10021-101D3;0.308602!10840-111E3;0.375113!10706-109H4;0.0974552!10033-101E6;0.188683!10032-101E5;0.782626!10490-107B4;0.934271!10439-106E7;0.993142!10022-101D4;0.835083!10176-103C5;0.0984277!10469-106I1;0.895516!10067-101I4;0.1344!10411-106B6;0.714992!10471-106I3;0.368467!10030-101E3;0.925641!10475-106I7;0.420388!10787-110H4;0.872769!10477-106I9;0.157338!10695-109G2;0.773214!11771-123I7;0.429826!11772-123I8;0.0769867!11773-123I9;0.337091!10093-102C3;0.225462!10442-106F1;0.124556!10442-106F1;0.549612!10201-103F3;0.706728!10639-108I9;0.804478!11843-124H7;0.352899!11841-124H5;0.432945!10693-109F9;0.983296!10436-106E4;0.961883!10483-107A6;0.571502!10282-104F3;0.889259!10023-101D5;0.0206282!10066-101I3;0.0273722!10065-101I2;0.52767!10800-110I8;0.0967019!10610-108F7;0.101109!10841-111E4;0.233498!10541-107H1;0.412445!10842-111E5;0.651559!10562-108A4;0.675204!10024-101D6;0.00441587!10064-101I1;0.0795442!10609-108F6;0.183851!10048-101G3;0.000768096!10781-110G7;0.189918!10181-103D1;6.0772e-05!10159-103A6;0.755458!10056-101H2;0.334575!10737-110B8;0.761722!10025-101D7;0.358251!10044-101F8;0.296851!10424-106D1;0.571806!10463-106H4;0.369999!10616-108G4;0.166172!10486-107A9;0.235781!10062-101H8;0.517263!10202-103F4;0.119845!10158-103A5;0.0356311!10441-106E9;0.211353!10031-101E4;0.254436!10063-101H9;0.983219!10063-101H9;0.375077!11763-123H8;0.335269!11765-123I1;0.417094!11768-123I4;0.208418!10807-111A6;0.333571!10790-110H7;0.334007!10798-110I6;0.836527!10786-110H3;0.502237!10591-108D6;0.490214!10593-108D8;0.132294!10590-108D5;0.456374!10026-101D8;0.510346!10096-102C6;0.931115!10168-103B6;0.386075!10154-103A1;0.66541!10209-103G2;0.301811!10061-101H7;0.0401311!10027-101D9;0.0780967!10043-101F7;0.512054!10783-110G9;0.212173!10028-101E1;0.529205!10060-101H6;0.0783398!10203-103F5;0.553259!10059-101H5;0.036545!10047-101G2;0.316487!10029-101E2;0.227811!10058-101H4;0.0220308!10418-106C4;0.261669!10492-107B6;0.0268655!10694-109G1;0.742837!10797-110I5;0.386663!10057-101H3;0.496837!10100-102D1;0.283506!10055-101H1;0.233496!10204-103F6;0.226048!10191-103E2;0.0921568!10563-108A5;0.412833
|name=11-TSACGCSTCAGT,CNhs13485,BestGuess:CREB1_f1_HM09(0.648721945847651),T:2933.0(44.14%),B:14777.5(34.97%),P:1e-53
|name=11-TSACGCSTCAGT,CNhs13485,BestGuess:CREB1_f1_HM09(0.648721945847651),T:2933.0(44.14%),B:14777.5(34.97%),P:1e-53
|tomtom_result=Pax6#MA0069.1;1;0.000205612;0.0978715;0.195074;12;TGACGCCTCAGT;TTCACGCATGAGTT;+!Pax5#MA0014.1;3;0.000891618;0.42441;0.300797;12;TGACGCCTCAGT;CCGCTACGCTTCAGTGCTCT;-!CREB1#MA0018.2;0;0.000951144;0.452744;0.300797;8;TGACGCCTCAGT;TGACGTCA;+!MET31#MA0333.1;-3;0.00154531;0.735567;0.327105;9;TGACGCCTCAGT;CGCCACACT;-!MBP1#MA0329.1;-2;0.00205933;0.980241;0.327105;7;TGACGCCTCAGT;ACGCGTA;+!hkb#MA0450.1;0;0.00206866;0.984683;0.327105;9;TGACGCCTCAGT;TCACGCCCC;-!MBP1::SWI6#MA0330.1;-2;0.00300193;1.42892;0.394814;7;TGACGCCTCAGT;ACGCGTT;+!ARG80#MA0271.1;0;0.00332915;1.58468;0.394814;6;TGACGCCTCAGT;AGACGC;+!TGA1A#MA0129.1;0;0.00705265;3.35706;0.743462;7;TGACGCCTCAGT;TGACGTA;-!Arnt::Ahr#MA0006.1;-1;0.00869186;4.13732;0.769137;6;TGACGCCTCAGT;CACGCA;-!HAC1#MA0310.1;-1;0.00916926;4.36457;0.769137;8;TGACGCCTCAGT;CACGTGTC;-!bZIP910#MA0096.1;1;0.00984553;4.68647;0.769137;6;TGACGCCTCAGT;CTGACGT;+!RXR::RAR_DR5#MA0159.1;0;0.010539;5.01655;0.769137;12;TGACGCCTCAGT;TGACCTCTCCGTGACCT;-!MET32#MA0334.1;-3;0.0119307;5.67904;0.808516;7;TGACGCCTCAGT;CGCCACA;+!CST6#MA0286.1;1;0.0158831;7.56036;0.893373;8;TGACGCCTCAGT;ATGACGTAA;+!TYE7#MA0409.1;0;0.0173543;8.26067;0.914713;7;TGACGCCTCAGT;TCACGTG;-
}}
}}

Latest revision as of 14:46, 7 September 2012

Full Name: 11-TSACGCSTCAGT,CNhs13485,BestGuess:CREB1_f1_HM09(0.648721945847651),T:2933.0(44.14%),B:14777.5(34.97%),P:1e-53

Motif matrix
POACGT
1322.632.9332.9332604.504
22.9331299.3191627.8152.933
32924.2012.9332.9332.933
42.9332924.2012.9332.933
52.9332.9332924.2012.933
6651.1261627.8152.933651.126
7651.1261302.252976.6892.933
8976.6892.933325.5631627.815
92.9332924.2012.9332.933
101953.3782.9332.933973.756
112.9332.9332924.2012.933
122.9332.9332.9332924.201

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax6#MA0069.110.0002056120.09787150.19507412TGACGCCTCAGTTTCACGCATGAGTT+
Pax5#MA0014.130.0008916180.424410.30079712TGACGCCTCAGTCCGCTACGCTTCAGTGCTCT-
CREB1#MA0018.200.0009511440.4527440.3007978TGACGCCTCAGTTGACGTCA+
MET31#MA0333.1-30.001545310.7355670.3271059TGACGCCTCAGTCGCCACACT-
MBP1#MA0329.1-20.002059330.9802410.3271057TGACGCCTCAGTACGCGTA+
hkb#MA0450.100.002068660.9846830.3271059TGACGCCTCAGTTCACGCCCC-
MBP1::SWI6#MA0330.1-20.003001931.428920.3948147TGACGCCTCAGTACGCGTT+
ARG80#MA0271.100.003329151.584680.3948146TGACGCCTCAGTAGACGC+
TGA1A#MA0129.100.007052653.357060.7434627TGACGCCTCAGTTGACGTA-
Arnt::Ahr#MA0006.1-10.008691864.137320.7691376TGACGCCTCAGTCACGCA-
HAC1#MA0310.1-10.009169264.364570.7691378TGACGCCTCAGTCACGTGTC-
bZIP910#MA0096.110.009845534.686470.7691376TGACGCCTCAGTCTGACGT+
RXR::RAR_DR5#MA0159.100.0105395.016550.76913712TGACGCCTCAGTTGACCTCTCCGTGACCT-
MET32#MA0334.1-30.01193075.679040.8085167TGACGCCTCAGTCGCCACA+
CST6#MA0286.110.01588317.560360.8933738TGACGCCTCAGTATGACGTAA+
TYE7#MA0409.100.01735438.260670.9147137TGACGCCTCAGTTCACGTG-
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