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MacroAPE 1083:CATCCATGTC,motif545: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;46.92;1017.06;179.4;136.62!2;905.28;187.68;97.98;189.06!3;150.42;121.44;131.1;977.04!4;136.62;1032.24;153.18;57.96!5;66.24;1081.92;106.26;12...")
 
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;0.0579652!12183-129A5;0.0429941!12184-129A6;0.0394857!10809-111A8;0.0523594!10597-108E3;0.372764!10717-109I6;0.520142!10455-106G5;0.976492!10534-107G3;0.714094!10429-106D6;0.837136!10464-106H5;0.819722!10827-111C8;0.519683!10789-110H6;0.233951!10828-111C9;0.91969!10788-110H5;0.54747!10792-110H9;0.451212!10765-110E9;0.986923!10829-111D1;0.28834!10830-111D2;0.00370732!10831-111D3;0.696219!10832-111D4;0.173897!10833-111D5;0.720716!10764-110E8;0.488804!10770-110F5;0.607061!10399-106A3;0.642142!10400-106A4;0.412723!10405-106A9;0.279716!10834-111D6;0.596635!10835-111D7;0.189835!10836-111D8;0.1496!10837-111D9;0.939632!10699-109G6;0.51861!10802-111A1;0.188106!10796-110I4;0.890992!10010-101C1;0.680782!10810-111A9;0.0529866!10421-106C7;0.556874!10708-109H6;0.295131!12235-129G3;0.518928!12236-129G4;0.238781!12237-129G5;0.706862!10167-103B5;0.191347!10151-102I7;0.178511!10428-106D5;0.0665068!10795-110I3;0.731049!10805-111A4;0.121575!10052-101G7;0.251882!10189-103D9;0.09163!10589-108D4;0.00656104!10425-106D2;0.417942!10427-106D4;0.378176!10702-109G9;0.764348!10432-106D9;0.0240562!10496-107C1;0.990642!10718-109I7;0.266943!10011-101C2;0.444063!10053-101G8;0.149682!10686-109F2;0.0676415!10084-102B3;0.723018!10012-101C3;0.12489!10085-102B4;0.164319!10482-107A5;0.310401!10419-106C5;0.47065!10080-102A8;0.920248!10760-110E4;0.008066!10709-109H7;0.164218!10710-109H8;0.485204!10703-109H1;0.725098!10719-109I8;0.405815!10642-109A3;0.53045!10177-103C6;0.183703!10164-103B2;0.0683004!10173-103C2;0.0914298!10166-103B4;0.405372!10083-102B2;0.154105!10188-103D8;0.308392!10552-107I3;0.190135!10553-107I4;0.380987!10013-101C4;0.108314!10536-107G5;0.185154!10618-108G6;0.080812!10423-106C9;0.392111!10785-110H2;0.860979!12238-129G6;0.300377!12239-129G7;0.626527!12240-129G8;0.643055!10416-106C2;0.832061!10801-110I9;0.414104!10766-110F1;0.37063!10824-111C5;0.29355!10825-111C6;0.596178!10826-111C7;0.63172!10454-106G4;0.498666!10409-106B4;0.495923!10638-108I8;0.985407!10636-108I6;0.176583!10513-107D9;0.597609!10420-106C6;0.665617!10082-102B1;0.788294!10014-101C5;0.0683676!10070-101I7;0.0823369!10452-106G2;0.0978246!10453-106G3;0.205362!10449-106F8;0.90799!10042-101F6;0.934645!10069-101I6;0.0486566!10193-103E4;0.818228!10631-108I1;0.12966!10438-106E6;0.593262!10488-107B2;0.803079!10196-103E7;0.26151!10071-101I8;0.595372!10071-101I8;0.233415!10041-101F5;0.24296!10451-106G1;0.125574!10450-106F9;0.355486!10604-108F1;0.424759!10605-108F2;0.137945!10606-108F3;0.666687!10603-108E9;0.260222!10497-107C2;0.560223!10448-106F7;0.528045!10643-109A4;0.851011!10426-106D3;0.67923!10431-106D8;0.867298!10197-103E8;0.376083!10443-106F2;0.516449!10815-111B5;0.741615!10816-111B6;0.595057!10817-111B7;0.958884!10015-101C6;0.503979!10410-106B5;0.164485!10054-101G9;0.816066!10758-110E2;0.20472!10711-109H9;0.0447935!10040-101F4;0.228194!10470-106I2;0.191049!10415-106C1;0.287934!10198-103E9;0.988595!10614-108G2;0.0793438!10612-108F9;0.38963!10549-107H9;0.803581!10615-108G3;0.865684!10487-107B1;0.352963!10433-106E1;0.814452!10688-109F4;0.520286!10444-106F3;0.646912!10444-106F3;0.724138!10485-107A8;0.99582!10413-106B8;0.812871!10175-103C4;0.258851!10161-103A8;0.0593628!12131-128D7;0.0202953!10624-108H3;0.234386!10712-109I1;0.163699!10205-103F7;0.453361!10206-103F8;0.105758!10207-103F9;0.417091!10050-101G5;0.00575563!10051-101G6;0.267592!10016-101C7;0.766799!10046-101G1;0.153818!10778-110G4;0.166609!10633-108I3;0.473107!10818-111B8;0.225496!10819-111B9;0.584091!10820-111C1;0.430984!10484-107A7;0.63616!10808-111A7;0.1844!10169-103B7;0.345654!10153-102I9;0.0648515!13425-144D5;0.0333121!13433-144E4;0.603631!13437-144E8;0.898192!11904-125F5;0.943305!11905-125F6;0.229157!10039-101F3;0.183842!10791-110H8;0.166271!10017-101C8;0.628214!10045-101F9;0.127483!10509-107D5;0.0256685!10839-111E2;0.186662!10692-109F8;0.327485!10079-102A7;0.189505!10078-102A6;0.600253!10721-110A1;0.274172!10569-108B2;0.109927!10570-108B3;0.0646718!10571-108B4;0.0172158!10647-109A8;0.0376406!10752-110D5;0.302064!10782-110G8;0.551073!10726-110A6;0.0173851!10018-101C9;0.823752!10086-102B5;0.98297!10182-103D2;0.609427!10165-103B3;0.0557725!10499-107C4;0.0694755!10408-106B3;0.539714!10019-101D1;0.47195!10068-101I5;0.00131502!10075-102A3;0.00514941!10077-102A5;0.00531669!10727-110A7;0.00586883!10775-110G1;0.824954!10412-106B7;0.659618!12231-129F8;0.80305!12232-129F9;0.156084!12233-129G1;0.0290202!12234-129G2;0.0952074!10414-106B9;0.20785!10170-103B8;0.20248!10183-103D3;0.300449!10150-102I6;0.188179!10174-103C3;0.0546362!10155-103A2;0.0403089!10038-101F2;0.0324024!10838-111E1;0.0790928!10759-110E3;0.185743!10514-107E1;0.698047!10465-106H6;0.881174!10691-109F7;0.675457!10843-111E6;0.66079!10844-111E7;0.590827!11747-123G1;0.0504045!11748-123G2;0.0032439!11749-123G3;0.0433695!11750-123G4;0.0251703!11751-123G5;0.115326!11840-124H4;0.186848!11752-123G6;0.0516811!11753-123G7;0.367975!11754-123G8;0.0982618!11755-123G9;0.0719278!11756-123H1;0.130176!11833-124G6;0.0594338!11760-123H5;0.530726!11836-124G9;0.0331237!11758-123H3;0.0107997!11835-124G8;0.0117344!11762-123H7;0.214104!11838-124H2;0.110473!11757-123H2;0.153175!11759-123H4;0.0393114!11761-123H6;0.044466!11842-124H6;0.166845!11837-124H1;0.0202291!10568-108B1;0.139754!13230-141I8;0.0801709!13231-141I9;0.0326468!10696-109G3;0.0312627!10493-107B7;0.407468!10494-107B8;0.736811!10850-111F4;0.137472!10851-111F5;0.0361955!10852-111F6;0.0464973!10853-111F7;0.0639494!10854-111F8;0.848142!10855-111F9;0.0200749!10856-111G1;0.762524!10847-111F1;0.802461!10846-111E9;0.141308!10848-111F2;0.218403!10845-111E8;0.131867!10857-111G2;0.984643!10858-111G3;0.76014!10156-103A3;0.114652!11901-125F2;0.0456774!11902-125F3;0.408042!11903-125F4;0.825541!10689-109F5;0.950295!10648-109A9;0.822757!10784-110H1;0.288601!10744-110C6;0.897816!10772-110F7;0.868865!10474-106I6;0.53112!10600-108E6;0.483305!10684-109E9;0.353292!12226-129F3;0.063464!12227-129F4;0.96763!10508-107D4;0.405918!10539-107G8;0.620503!10607-108F4;0.352964!10555-107I6;0.209607!10774-110F9;0.391456!10637-108I7;0.434328!10663-109C6;0.0402263!10728-110A8;0.349245!10729-110A9;0.00909293!10430-106D7;0.162754!10730-110B1;0.471644!10813-111B3;0.665658!10812-111B2;0.392839!10037-101F1;0.24542!10172-103C1;0.15803!10163-103B1;0.155726!10076-102A4;0.0189796!10073-102A1;0.339194!10036-101E9;0.202793!10195-103E6;0.144011!10277-104E7;0.129149!10434-106E2;0.169057!10550-107I1;0.377513!10545-107H5;0.936046!10544-107H4;0.0242984!10704-109H2;0.35898!10510-107D6;0.0323373!10558-107I9;0.250379!10020-101D2;0.935037!10732-110B3;0.087304!10049-101G4;0.376246!10698-109G5;0.679901!10437-106E5;0.880442!10417-106C3;0.978807!10035-101E8;0.864611!10171-103B9;0.141577!10157-103A4;0.151953!10034-101E7;0.0614589!10072-101I9;0.146059!10199-103F1;0.141427!10200-103F2;0.434892!10697-109G4;0.545576!10723-110A3;0.351937!10179-103C8;0.584609!10160-103A7;0.301639!10180-103C9;0.352111!10162-103A9;0.888544!10021-101D3;0.449122!10840-111E3;0.0116374!10706-109H4;0.757874!10033-101E6;0.199955!10032-101E5;0.255159!10490-107B4;0.160242!10439-106E7;0.489635!10022-101D4;0.38164!10176-103C5;0.164623!10469-106I1;0.220195!10067-101I4;0.379315!10411-106B6;0.295207!10471-106I3;0.300151!10030-101E3;0.456125!10475-106I7;0.0165506!10787-110H4;0.627257!10477-106I9;0.659884!10695-109G2;0.0388091!11771-123I7;0.340243!11772-123I8;0.0997294!11773-123I9;0.816547!10093-102C3;0.106191!10442-106F1;0.0633556!10442-106F1;0.161053!10201-103F3;0.155308!10639-108I9;0.749069!11843-124H7;0.416162!11841-124H5;0.776646!10693-109F9;0.205005!10436-106E4;0.783067!10483-107A6;0.936196!10282-104F3;0.369449!10023-101D5;0.60383!10066-101I3;0.383!10065-101I2;0.783764!10800-110I8;0.80433!10610-108F7;0.451822!10841-111E4;0.383845!10541-107H1;0.414248!10842-111E5;0.381163!10562-108A4;0.861686!10024-101D6;0.218395!10064-101I1;0.0608662!10609-108F6;0.224677!10048-101G3;0.709477!10781-110G7;0.547992!10181-103D1;0.693933!10159-103A6;0.0885857!10056-101H2;0.0407802!10737-110B8;0.237475!10025-101D7;0.135738!10044-101F8;0.00770916!10424-106D1;0.000771953!10463-106H4;0.636432!10616-108G4;0.758292!10486-107A9;0.207694!10062-101H8;0.370719!10202-103F4;0.0409467!10158-103A5;0.199367!10441-106E9;0.0462883!10031-101E4;0.00946847!10063-101H9;0.162335!10063-101H9;0.116914!11763-123H8;0.381157!11765-123I1;0.19456!11768-123I4;0.260744!10807-111A6;0.015039!10790-110H7;0.984291!10798-110I6;0.871015!10786-110H3;0.665243!10591-108D6;0.78067!10593-108D8;0.718181!10590-108D5;0.67272!10026-101D8;0.973081!10096-102C6;0.0229978!10168-103B6;0.0329269!10154-103A1;0.029204!10209-103G2;0.03012!10061-101H7;0.455238!10027-101D9;0.30687!10043-101F7;0.114616!10783-110G9;0.000389293!10028-101E1;0.638895!10060-101H6;0.0756253!10203-103F5;0.362075!10059-101H5;0.919286!10047-101G2;0.861894!10029-101E2;0.00854648!10058-101H4;0.0148862!10418-106C4;0.265892!10492-107B6;0.349299!10694-109G1;0.794775!10797-110I5;0.465353!10057-101H3;0.828858!10100-102D1;0.506959!10055-101H1;0.161314!10204-103F6;0.475287!10191-103E2;0.0193288!10563-108A5;0.0555973
|name=CATCCATGTC,motif545,CNhs11972,T:1380.0(42.86%),B:24137.1(32.95%),P:1e-31
|name=CATCCATGTC,motif545,CNhs11972,T:1380.0(42.86%),B:24137.1(32.95%),P:1e-31
|tomtom_result=SOK2#MA0385.1;2;0.00443248;2.10986;1;9;CATCCATGTC;TGCCTGCAGGT;-!Hltf#MA0109.1;-1;0.00945004;4.49822;1;9;CATCCATGTC;AACCTTATAT;+!RORA_1#MA0071.1;-1;0.0130748;6.22359;1;9;CATCCATGTC;ATCAAGGTCA;+!ESR1#MA0112.2;0;0.0138064;6.57183;1;10;CATCCATGTC;GGCCCAGGTCACCCTGACCT;+!GATA2#MA0036.1;0;0.0197643;9.40781;1;5;CATCCATGTC;TATCC;-!ARR1#MA0274.1;-1;0.0205703;9.79147;1;8;CATCCATGTC;ATTCAAGT;-
}}
}}

Latest revision as of 14:51, 7 September 2012

Full Name: CATCCATGTC,motif545,CNhs11972,T:1380.0(42.86%),B:24137.1(32.95%),P:1e-31

Motif matrix
POACGT
146.921017.06179.4136.62
2905.28187.6897.98189.06
3150.42121.44131.1977.04
4136.621032.24153.1857.96
566.241081.92106.26125.58
6921.84155.94106.26195.96
7146.28132.48226.32874.92
8138136.62897208.38
992.46121.44186.3979.8
10102.12970.14138169.74

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SOK2#MA0385.120.004432482.1098619CATCCATGTCTGCCTGCAGGT-
Hltf#MA0109.1-10.009450044.4982219CATCCATGTCAACCTTATAT+
RORA_1#MA0071.1-10.01307486.2235919CATCCATGTCATCAAGGTCA+
ESR1#MA0112.200.01380646.57183110CATCCATGTCGGCCCAGGTCACCCTGACCT+
GATA2#MA0036.100.01976439.4078115CATCCATGTCTATCC-
ARR1#MA0274.1-10.02057039.7914718CATCCATGTCATTCAAGT-