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MacroAPE 1083:FOXC2 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.267857142857143;0.267857142857143;3.125;1.339285714285715!2;1.07142857142857;1.07142857142857;0.0;2.857142857142855!3;0.0;1.07142857142857...")
 
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77!10828-111C9;0.832772!10788-110H5;0.406631!10792-110H9;0.114721!10765-110E9;0.201395!10829-111D1;0.295606!10830-111D2;0.179624!10831-111D3;0.0938497!10832-111D4;0.510043!10833-111D5;0.705304!10764-110E8;0.839518!10770-110F5;0.928307!10399-106A3;0.715785!10400-106A4;0.172037!10405-106A9;0.149231!10834-111D6;0.143726!10835-111D7;0.291391!10836-111D8;0.245872!10837-111D9;0.475486!10699-109G6;0.281393!10802-111A1;0.49998!10796-110I4;0.161297!10010-101C1;0.79438!10810-111A9;0.0633491!10421-106C7;0.214269!10708-109H6;0.857284!12235-129G3;0.132494!12236-129G4;0.584827!12237-129G5;0.390781!10167-103B5;0.237072!10151-102I7;0.841372!10428-106D5;0.976626!10795-110I3;0.683467!10805-111A4;0.206729!10052-101G7;0.982108!10189-103D9;0.356653!10589-108D4;0.59233!10425-106D2;0.612137!10427-106D4;0.874883!10702-109G9;0.349771!10432-106D9;0.98568!10496-107C1;0.384967!10718-109I7;0.155516!10011-101C2;0.151068!10053-101G8;0.197345!10686-109F2;0.923767!10084-102B3;0.29593!10012-101C3;0.794006!10085-102B4;0.729612!10482-107A5;0.47651!10419-106C5;0.119057!10080-102A8;0.375738!10760-110E4;0.935701!10709-109H7;0.0821828!10710-109H8;0.653039!10703-109H1;0.232883!10719-109I8;0.19272!10642-109A3;0.875092!10177-103C6;0.131183!10164-103B2;0.568392!10173-103C2;0.840425!10166-103B4;0.771121!10083-102B2;0.909791!10188-103D8;0.639031!10552-107I3;0.709415!10553-107I4;0.00977166!10013-101C4;0.943903!10536-107G5;0.125964!10618-108G6;0.636069!10423-106C9;0.209775!10785-110H2;0.136084!12238-129G6;0.0186185!12239-129G7;0.808997!12240-129G8;0.285027!10416-106C2;0.355344!10801-110I9;0.960378!10766-110F1;0.831441!10824-111C5;0.394361!10825-111C6;0.131726!10826-111C7;0.132014!10454-106G4;0.115482!10409-106B4;0.407694!10638-108I8;0.389565!10636-108I6;0.104106!10513-107D9;0.812374!10420-106C6;0.227756!10082-102B1;0.971679!10014-101C5;0.437252!10070-101I7;0.897902!10452-106G2;0.451843!10453-106G3;0.339918!10449-106F8;0.258798!10042-101F6;0.356686!10069-101I6;0.95707!10193-103E4;0.208688!10631-108I1;0.706057!10438-106E6;0.584035!10488-107B2;0.884225!10196-103E7;0.0836508!10071-101I8;0.635457!10071-101I8;0.412809!10041-101F5;0.941137!10451-106G1;0.134867!10450-106F9;0.846182!10604-108F1;0.857057!10605-108F2;0.412683!10606-108F3;0.909255!10603-108E9;0.699462!10497-107C2;0.514738!10448-106F7;0.733451!10643-109A4;0.544398!10426-106D3;0.214408!10431-106D8;0.942685!10197-103E8;0.88299!10443-106F2;0.662224!10815-111B5;0.640545!10816-111B6;0.347853!10817-111B7;0.412323!10015-101C6;0.273324!10410-106B5;0.0476586!10054-101G9;0.201731!10758-110E2;0.381719!10711-109H9;0.651899!10040-101F4;0.982002!10470-106I2;0.731616!10415-106C1;0.133786!10198-103E9;0.778928!10614-108G2;0.411147!10612-108F9;0.349752!10549-107H9;0.537007!10615-108G3;0.695588!10487-107B1;0.503993!10433-106E1;0.760328!10688-109F4;0.639292!10444-106F3;0.568058!10444-106F3;0.26942!10485-107A8;0.327606!10413-106B8;0.211154!10175-103C4;0.0974442!10161-103A8;0.599791!12131-128D7;0.924695!10624-108H3;0.68406!10712-109I1;0.729943!10205-103F7;0.540688!10206-103F8;0.431908!10207-103F9;0.380329!10050-101G5;0.29415!10051-101G6;0.789342!10016-101C7;0.74173!10046-101G1;0.304488!10778-110G4;0.39975!10633-108I3;0.782274!10818-111B8;0.125985!10819-111B9;0.107167!10820-111C1;0.107315!10484-107A7;0.105249!10808-111A7;0.0490086!10169-103B7;0.293015!10153-102I9;0.907635!13425-144D5;0.962757!13433-144E4;0.779063!13437-144E8;0.718835!11904-125F5;0.63963!11905-125F6;0.32428!10039-101F3;0.84631!10791-110H8;0.750243!10017-101C8;0.658271!10045-101F9;0.890936!10509-107D5;0.517203!10839-111E2;0.563986!10692-109F8;0.890232!10079-102A7;0.723127!10078-102A6;0.377633!10721-110A1;0.745023!10569-108B2;0.208912!10570-108B3;0.901679!10571-108B4;0.948311!10647-109A8;0.779409!10752-110D5;0.279494!10782-110G8;0.668691!10726-110A6;0.722222!10018-101C9;0.582771!10086-102B5;0.322004!10182-103D2;0.880136!10165-103B3;0.575553!10499-107C4;0.790041!10408-106B3;0.352919!10019-101D1;0.0991003!10068-101I5;0.286808!10075-102A3;0.329163!10077-102A5;0.326297!10727-110A7;0.167318!10775-110G1;0.723031!10412-106B7;0.762481!12231-129F8;0.5695!12232-129F9;0.512577!12233-129G1;0.598278!12234-129G2;0.736048!10414-106B9;0.923966!10170-103B8;0.355218!10183-103D3;0.615024!10150-102I6;0.637285!10174-103C3;0.767363!10155-103A2;0.718974!10038-101F2;0.974317!10838-111E1;0.787558!10759-110E3;0.429609!10514-107E1;0.608168!10465-106H6;0.875601!10691-109F7;0.357391!10843-111E6;0.544186!10844-111E7;0.533119!11747-123G1;0.56317!11748-123G2;0.695036!11749-123G3;0.718169!11750-123G4;0.525312!11751-123G5;0.805511!11840-124H4;0.933215!11752-123G6;0.311044!11753-123G7;0.301927!11754-123G8;0.558058!11755-123G9;0.116564!11756-123H1;0.159638!11833-124G6;0.0995043!11760-123H5;0.792151!11836-124G9;0.408127!11758-123H3;0.399801!11835-124G8;0.84008!11762-123H7;0.795128!11838-124H2;0.599816!11757-123H2;0.704632!11759-123H4;0.717481!11761-123H6;0.517462!11842-124H6;0.322359!11837-124H1;0.813398!10568-108B1;0.526539!13230-141I8;0.171138!13231-141I9;0.850381!10696-109G3;0.839476!10493-107B7;0.596248!10494-107B8;0.00765937!10850-111F4;0.364361!10851-111F5;0.178581!10852-111F6;0.67164!10853-111F7;0.662943!10854-111F8;0.555544!10855-111F9;0.688618!10856-111G1;0.189852!10847-111F1;0.225985!10846-111E9;0.917361!10848-111F2;0.4985!10845-111E8;0.240468!10857-111G2;0.0896039!10858-111G3;0.116324!10156-103A3;0.389384!11901-125F2;0.820252!11902-125F3;0.822753!11903-125F4;0.839994!10689-109F5;0.976019!10648-109A9;0.248054!10784-110H1;0.0757877!10744-110C6;0.840882!10772-110F7;0.629082!10474-106I6;0.145494!10600-108E6;0.810179!10684-109E9;0.446883!12226-129F3;0.0237295!12227-129F4;0.485592!10508-107D4;0.128683!10539-107G8;0.0765176!10607-108F4;0.00734608!10555-107I6;0.994387!10774-110F9;0.02523!10637-108I7;0.348226!10663-109C6;0.449723!10728-110A8;0.742873!10729-110A9;0.498342!10430-106D7;0.939225!10730-110B1;0.578871!10813-111B3;0.909753!10812-111B2;0.650145!10037-101F1;0.565962!10172-103C1;0.823249!10163-103B1;0.849043!10076-102A4;0.940953!10073-102A1;0.634085!10036-101E9;0.720344!10195-103E6;0.638976!10277-104E7;0.755965!10434-106E2;0.966326!10550-107I1;0.70523!10545-107H5;0.817731!10544-107H4;0.624286!10704-109H2;0.611422!10510-107D6;0.843399!10558-107I9;0.142008!10020-101D2;0.966827!10732-110B3;0.530472!10049-101G4;0.835485!10698-109G5;0.0109474!10437-106E5;0.174533!10417-106C3;0.606123!10035-101E8;0.36103!10171-103B9;0.634825!10157-103A4;0.530018!10034-101E7;0.821623!10072-101I9;0.636304!10199-103F1;0.672176!10200-103F2;0.764165!10697-109G4;0.0769242!10723-110A3;0.122453!10179-103C8;0.351582!10160-103A7;0.903341!10180-103C9;0.605716!10162-103A9;0.562254!10021-101D3;0.850626!10840-111E3;0.222192!10706-109H4;0.304679!10033-101E6;0.0748522!10032-101E5;0.808772!10490-107B4;0.586481!10439-106E7;0.122642!10022-101D4;0.577278!10176-103C5;0.109599!10469-106I1;0.560315!10067-101I4;0.0778493!10411-106B6;0.603039!10471-106I3;0.315821!10030-101E3;0.0273517!10475-106I7;0.914044!10787-110H4;0.453566!10477-106I9;0.690623!10695-109G2;0.265698!11771-123I7;0.0929203!11772-123I8;0.106478!11773-123I9;0.0905414!10093-102C3;0.0932919!10442-106F1;0.960015!10442-106F1;0.0648612!10201-103F3;0.0518956!10639-108I9;0.698537!11843-124H7;0.423227!11841-124H5;0.0357571!10693-109F9;0.0300622!10436-106E4;0.658565!10483-107A6;0.408364!10282-104F3;0.207005!10023-101D5;0.245663!10066-101I3;0.0798376!10065-101I2;0.381529!10800-110I8;0.268694!10610-108F7;0.598524!10841-111E4;0.722747!10541-107H1;0.530277!10842-111E5;0.73985!10562-108A4;0.888375!10024-101D6;0.52876!10064-101I1;0.948344!10609-108F6;0.155544!10048-101G3;0.65685!10781-110G7;0.127866!10181-103D1;0.616929!10159-103A6;0.725348!10056-101H2;0.921736!10737-110B8;0.843078!10025-101D7;0.579522!10044-101F8;0.692599!10424-106D1;0.950949!10463-106H4;0.221269!10616-108G4;0.572176!10486-107A9;0.858826!10062-101H8;0.477063!10202-103F4;0.297809!10158-103A5;0.61349!10441-106E9;0.805073!10031-101E4;0.330412!10063-101H9;0.624422!10063-101H9;0.809656!11763-123H8;0.214904!11765-123I1;0.379647!11768-123I4;0.534395!10807-111A6;0.300734!10790-110H7;0.379734!10798-110I6;0.311517!10786-110H3;0.553712!10591-108D6;0.342719!10593-108D8;0.973292!10590-108D5;0.656783!10026-101D8;0.899187!10096-102C6;0.941551!10168-103B6;0.467979!10154-103A1;0.71561!10209-103G2;0.843902!10061-101H7;0.0525599!10027-101D9;0.21461!10043-101F7;0.236245!10783-110G9;0.145905!10028-101E1;0.977877!10060-101H6;0.687186!10203-103F5;0.256137!10059-101H5;0.0635075!10047-101G2;0.190845!10029-101E2;0.114783!10058-101H4;0.0639865!10418-106C4;0.17123!10492-107B6;0.512253!10694-109G1;0.90584!10797-110I5;0.737379!10057-101H3;0.061237!10100-102D1;0.23001!10055-101H1;0.115366!10204-103F6;0.931834!10191-103E2;0.458895!10563-108A5;0.86367
|name=FOXC2_f1
|name=FOXC2_f1
|tomtom_result=Foxa2#MA0047.2;-3;0.000159672;0.0760039;0.0816045;12;GTTTGTTTTGCCAGA;TGTTTACTTAGG;+!FOXA1#MA0148.1;-3;0.000200124;0.0952591;0.0816045;11;GTTTGTTTTGCCAGA;TGTTTACTTTG;+!SRY#MA0084.1;-1;0.000260328;0.123916;0.0816045;9;GTTTGTTTTGCCAGA;ATTGTTTAC;-!HCM1#MA0317.1;-2;0.000472813;0.225059;0.106882;8;GTTTGTTTTGCCAGA;TTGTTTAT;-!fkh#MA0446.1;-3;0.000681933;0.3246;0.106882;11;GTTTGTTTTGCCAGA;TGTTTGCTTAA;+!slp1#MA0458.1;-2;0.000681933;0.3246;0.106882;11;GTTTGTTTTGCCAGA;TTGTTTACATT;+!Sox5#MA0087.1;-1;0.00202763;0.965153;0.243906;7;GTTTGTTTTGCCAGA;ATTGTTA;-!mirr#MA0233.1;-3;0.0020749;0.987654;0.243906;5;GTTTGTTTTGCCAGA;TGTTT;-!Sox2#MA0143.1;1;0.00277009;1.31856;0.289445;14;GTTTGTTTTGCCAGA;CCTTTGTTATGCAAA;+!FOXF2#MA0030.1;-1;0.0032081;1.52706;0.301691;14;GTTTGTTTTGCCAGA;ATTGTTTACGTTTG;-!ara#MA0210.1;-3;0.00376971;1.79438;0.322277;5;GTTTGTTTTGCCAGA;TGTTA;-!FOXO3#MA0157.1;-3;0.00440789;2.09816;0.332953;8;GTTTGTTTTGCCAGA;TGTTTACA;-!Foxd3#MA0041.1;0;0.0046279;2.20288;0.332953;12;GTTTGTTTTGCCAGA;GAATGTTTGTTT;+!FOXI1#MA0042.1;4;0.00533711;2.54047;0.332953;8;GTTTGTTTTGCCAGA;GGATGTTTGTTT;+!D#MA00445.1;2;0.00571984;2.72264;0.332953;9;GTTTGTTTTGCCAGA;TCCATTGTTCT;+!FOXD1#MA0031.1;-2;0.00593043;2.82289;0.332953;8;GTTTGTTTTGCCAGA;ATGTTTAC;-!br_Z3#MA0012.1;2;0.0060189;2.865;0.332953;9;GTTTGTTTTGCCAGA;CTTTTAGTTTA;-!caup#MA0217.1;-3;0.00744467;3.54366;0.384653;5;GTTTGTTTTGCCAGA;TGTTA;-!hb#MA0049.1;-1;0.00777156;3.69926;0.384653;10;GTTTGTTTTGCCAGA;TTTTTTATGC;-!FKH1#MA0296.1;4;0.00902716;4.29693;0.424459;15;GTTTGTTTTGCCAGA;TCCTCTTTGTTTACAATTCA;-!Pou5f1#MA0142.1;0;0.00948753;4.51607;0.424863;15;GTTTGTTTTGCCAGA;CTTTGTTATGCAAAT;+!NFE2L2#MA0150.1;-3;0.0125363;5.96728;0.535872;11;GTTTGTTTTGCCAGA;TGCTGAGTCAT;-!onecut#MA0235.1;-2;0.0148742;7.08011;0.608162;7;GTTTGTTTTGCCAGA;TTGATTT;+!FKH2#MA0297.1;-3;0.0165528;7.87911;0.648595;7;GTTTGTTTTGCCAGA;TGTTTAC;-!Gamyb#MA0034.1;0;0.0201436;9.58835;0.750127;10;GTTTGTTTTGCCAGA;GGCGGTTGTC;-
}}
}}

Latest revision as of 14:51, 7 September 2012

Full Name: FOXC2_f1

Motif matrix
POACGT
10.2678571428571430.2678571428571433.1251.339285714285715
21.071428571428571.071428571428570.02.857142857142855
30.01.071428571428570.03.92857142857143
40.00.00.05.0
51.071428571428570.03.928571428571430.0
60.00.00.05.0
70.00.00.05.0
81.071428571428570.01.071428571428572.857142857142855
91.7857142857142850.00.03.2142857142857153
100.01.7857142857142853.21428571428571530.0
111.071428571428572.1428571428571450.01.785714285714285
120.03.21428571428571530.01.785714285714285
135.00.00.00.0
140.00.7142857142857154.2857142857142850.0
152.41071428571428470.2678571428571431.3392857142857150.982142857142855

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Foxa2#MA0047.2-30.0001596720.07600390.081604512GTTTGTTTTGCCAGATGTTTACTTAGG+
FOXA1#MA0148.1-30.0002001240.09525910.081604511GTTTGTTTTGCCAGATGTTTACTTTG+
SRY#MA0084.1-10.0002603280.1239160.08160459GTTTGTTTTGCCAGAATTGTTTAC-
HCM1#MA0317.1-20.0004728130.2250590.1068828GTTTGTTTTGCCAGATTGTTTAT-
fkh#MA0446.1-30.0006819330.32460.10688211GTTTGTTTTGCCAGATGTTTGCTTAA+
slp1#MA0458.1-20.0006819330.32460.10688211GTTTGTTTTGCCAGATTGTTTACATT+
Sox5#MA0087.1-10.002027630.9651530.2439067GTTTGTTTTGCCAGAATTGTTA-
mirr#MA0233.1-30.00207490.9876540.2439065GTTTGTTTTGCCAGATGTTT-
Sox2#MA0143.110.002770091.318560.28944514GTTTGTTTTGCCAGACCTTTGTTATGCAAA+
FOXF2#MA0030.1-10.00320811.527060.30169114GTTTGTTTTGCCAGAATTGTTTACGTTTG-
ara#MA0210.1-30.003769711.794380.3222775GTTTGTTTTGCCAGATGTTA-
FOXO3#MA0157.1-30.004407892.098160.3329538GTTTGTTTTGCCAGATGTTTACA-
Foxd3#MA0041.100.00462792.202880.33295312GTTTGTTTTGCCAGAGAATGTTTGTTT+
FOXI1#MA0042.140.005337112.540470.3329538GTTTGTTTTGCCAGAGGATGTTTGTTT+
D#MA00445.120.005719842.722640.3329539GTTTGTTTTGCCAGATCCATTGTTCT+
FOXD1#MA0031.1-20.005930432.822890.3329538GTTTGTTTTGCCAGAATGTTTAC-
br_Z3#MA0012.120.00601892.8650.3329539GTTTGTTTTGCCAGACTTTTAGTTTA-
caup#MA0217.1-30.007444673.543660.3846535GTTTGTTTTGCCAGATGTTA-
hb#MA0049.1-10.007771563.699260.38465310GTTTGTTTTGCCAGATTTTTTATGC-
FKH1#MA0296.140.009027164.296930.42445915GTTTGTTTTGCCAGATCCTCTTTGTTTACAATTCA-
Pou5f1#MA0142.100.009487534.516070.42486315GTTTGTTTTGCCAGACTTTGTTATGCAAAT+
NFE2L2#MA0150.1-30.01253635.967280.53587211GTTTGTTTTGCCAGATGCTGAGTCAT-
onecut#MA0235.1-20.01487427.080110.6081627GTTTGTTTTGCCAGATTGATTT+
FKH2#MA0297.1-30.01655287.879110.6485957GTTTGTTTTGCCAGATGTTTAC-
Gamyb#MA0034.100.02014369.588350.75012710GTTTGTTTTGCCAGAGGCGGTTGTC-
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