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MacroAPE 1083:GTWCAACA,motif210: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;192.576;285.088;465.392;0.944!2;0.944;0.944;0.944;941.168!3;452.176;0.944;179.36;311.52!4;0.944;821.28;0.944;120.832!5;485.216;0.944;226.56;...")
 
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448!10568-108B1;0.759528!13230-141I8;0.64187!13231-141I9;0.534599!10696-109G3;0.706394!10493-107B7;0.00604404!10494-107B8;0.546477!10850-111F4;0.675492!10851-111F5;0.490903!10852-111F6;0.966261!10853-111F7;0.702425!10854-111F8;0.360698!10855-111F9;0.276272!10856-111G1;0.565815!10847-111F1;0.569433!10846-111E9;0.767665!10848-111F2;0.220483!10845-111E8;0.295818!10857-111G2;0.874917!10858-111G3;0.843178!10156-103A3;0.34578!11901-125F2;0.138925!11902-125F3;0.266448!11903-125F4;0.151309!10689-109F5;0.0717207!10648-109A9;0.915596!10784-110H1;0.695377!10744-110C6;0.676191!10772-110F7;0.0731387!10474-106I6;0.13562!10600-108E6;0.0303303!10684-109E9;0.293774!12226-129F3;0.170675!12227-129F4;0.0954432!10508-107D4;0.0839382!10539-107G8;0.36917!10607-108F4;0.257154!10555-107I6;0.718065!10774-110F9;0.298889!10637-108I7;0.315512!10663-109C6;0.572363!10728-110A8;0.468817!10729-110A9;0.929779!10430-106D7;0.501695!10730-110B1;0.684978!10813-111B3;0.580223!10812-111B2;0.375215!10037-101F1;0.716626!10172-103C1;0.139825!10163-103B1;0.363503!10076-102A4;0.0911138!10073-102A1;0.224636!10036-101E9;0.0235199!10195-103E6;0.185782!10277-104E7;0.169739!10434-106E2;0.0272981!10550-107I1;0.757997!10545-107H5;0.448735!10544-107H4;0.85232!10704-109H2;0.653395!10510-107D6;0.96144!10558-107I9;0.437698!10020-101D2;0.167924!10732-110B3;0.00813305!10049-101G4;0.849804!10698-109G5;0.0390318!10437-106E5;0.891379!10417-106C3;0.706433!10035-101E8;0.418185!10171-103B9;0.190273!10157-103A4;0.201696!10034-101E7;0.211797!10072-101I9;0.173167!10199-103F1;0.0144317!10200-103F2;0.767855!10697-109G4;0.124054!10723-110A3;0.677486!10179-103C8;0.205426!10160-103A7;0.00794883!10180-103C9;0.0119398!10162-103A9;0.308472!10021-101D3;0.0924878!10840-111E3;0.135675!10706-109H4;0.102741!10033-101E6;0.615113!10032-101E5;0.123166!10490-107B4;0.206037!10439-106E7;0.468411!10022-101D4;0.931977!10176-103C5;0.0447252!10469-106I1;0.227094!10067-101I4;0.702576!10411-106B6;0.105903!10471-106I3;0.661071!10030-101E3;0.0233783!10475-106I7;0.0110219!10787-110H4;0.983848!10477-106I9;0.426775!10695-109G2;0.0687774!11771-123I7;0.187377!11772-123I8;0.272045!11773-123I9;0.784354!10093-102C3;0.40882!10442-106F1;0.658569!10442-106F1;0.243099!10201-103F3;0.100285!10639-108I9;0.0880005!11843-124H7;0.959786!11841-124H5;0.0120776!10693-109F9;0.242339!10436-106E4;0.640918!10483-107A6;0.765694!10282-104F3;0.630889!10023-101D5;0.158438!10066-101I3;0.106104!10065-101I2;0.0841629!10800-110I8;0.0812443!10610-108F7;0.921034!10841-111E4;0.586733!10541-107H1;0.700434!10842-111E5;0.90154!10562-108A4;0.463634!10024-101D6;0.895297!10064-101I1;0.38996!10609-108F6;0.549102!10048-101G3;0.85437!10781-110G7;0.0550018!10181-103D1;0.791921!10159-103A6;0.0375435!10056-101H2;0.0220507!10737-110B8;0.0359157!10025-101D7;0.582723!10044-101F8;0.311743!10424-106D1;0.053144!10463-106H4;0.173973!10616-108G4;0.488044!10486-107A9;0.518017!10062-101H8;0.21088!10202-103F4;0.0604444!10158-103A5;0.517922!10441-106E9;0.0657299!10031-101E4;0.459158!10063-101H9;0.160117!10063-101H9;0.016026!11763-123H8;0.488357!11765-123I1;0.474421!11768-123I4;0.486224!10807-111A6;0.331116!10790-110H7;0.657876!10798-110I6;0.847969!10786-110H3;0.211117!10591-108D6;0.790267!10593-108D8;0.9572!10590-108D5;0.879471!10026-101D8;0.3603!10096-102C6;0.0210251!10168-103B6;0.0788889!10154-103A1;0.157401!10209-103G2;0.0666605!10061-101H7;0.125596!10027-101D9;0.0346367!10043-101F7;0.896387!10783-110G9;0.366036!10028-101E1;0.933408!10060-101H6;0.081215!10203-103F5;0.0220668!10059-101H5;0.18844!10047-101G2;0.212632!10029-101E2;0.278073!10058-101H4;0.129701!10418-106C4;0.102957!10492-107B6;0.913345!10694-109G1;0.95678!10797-110I5;0.0525985!10057-101H3;0.325436!10100-102D1;0.0895262!10055-101H1;0.019156!10204-103F6;0.0508!10191-103E2;0.0212974!10563-108A5;0.286396
|name=GTWCAACA,motif210,CNhs11971,T:944.0(29.14%),B:14467.0(19.32%),P:1e-40
|name=GTWCAACA,motif210,CNhs11971,T:944.0(29.14%),B:14467.0(19.32%),P:1e-40
|tomtom_result=HMG-1#MA0044.1;2;0.00180267;0.85807;1;7;GTACAACA;GAATACAAC;-!BRCA1#MA0133.1;-2;0.00745708;3.54957;1;6;GTACAACA;ACAACAC;+
}}
}}

Latest revision as of 15:04, 7 September 2012

Full Name: GTWCAACA,motif210,CNhs11971,T:944.0(29.14%),B:14467.0(19.32%),P:1e-40

Motif matrix
POACGT
1192.576285.088465.3920.944
20.9440.9440.944941.168
3452.1760.944179.36311.52
40.944821.280.944120.832
5485.2160.944226.56231.28
6624.928317.1840.9440.944
70.944816.56125.5520.944
8451.232252.048239.7760.944

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HMG-1#MA0044.120.001802670.8580717GTACAACAGAATACAAC-
BRCA1#MA0133.1-20.007457083.5495716GTACAACAACAACAC+
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