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MacroAPE 1083:14-TTAMCGKAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.311;12.129;0.311;298.249!2;22.392;0.311;6.22;282.077!3;229.829;6.22;31.1;43.851!4;99.831;143.06;53.492;14.617!5;0.311;310.067;0.311;0.311!...")
 
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;0.0987793!10827-111C8;0.0430701!10789-110H6;0.0686878!10828-111C9;0.250794!10788-110H5;0.668314!10792-110H9;0.202716!10765-110E9;0.207463!10829-111D1;0.336212!10830-111D2;0.070327!10831-111D3;0.404831!10832-111D4;0.417825!10833-111D5;0.115039!10764-110E8;0.0880523!10770-110F5;0.329246!10399-106A3;0.0150078!10400-106A4;0.192004!10405-106A9;0.235394!10834-111D6;0.297771!10835-111D7;0.227006!10836-111D8;0.129226!10837-111D9;0.16125!10699-109G6;0.234057!10802-111A1;0.0521815!10796-110I4;0.151041!10010-101C1;0.00293985!10810-111A9;0.0980376!10421-106C7;0.630417!10708-109H6;0.0103264!12235-129G3;0.819466!12236-129G4;0.354285!12237-129G5;0.271999!10167-103B5;0.877353!10151-102I7;0.000260009!10428-106D5;2.96348e-05!10795-110I3;0.224072!10805-111A4;0.00610765!10052-101G7;0.665878!10189-103D9;0.0684344!10589-108D4;0.0551898!10425-106D2;0.417569!10427-106D4;0.532156!10702-109G9;0.132957!10432-106D9;0.639822!10496-107C1;0.129811!10718-109I7;0.16161!10011-101C2;0.132729!10053-101G8;0.0481115!10686-109F2;0.808177!10084-102B3;0.317578!10012-101C3;0.000182682!10085-102B4;0.0012498!10482-107A5;0.000898127!10419-106C5;0.119562!10080-102A8;0.151447!10760-110E4;0.301501!10709-109H7;0.458281!10710-109H8;0.22709!10703-109H1;0.609139!10719-109I8;0.824437!10642-109A3;0.980466!10177-103C6;0.332656!10164-103B2;0.00332927!10173-103C2;6.92289e-05!10166-103B4;0.0498465!10083-102B2;0.00219679!10188-103D8;0.00293946!10552-107I3;0.0016446!10553-107I4;0.106307!10013-101C4;0.710114!10536-107G5;0.0121611!10618-108G6;0.0191129!10423-106C9;0.124128!10785-110H2;0.0895752!12238-129G6;0.302782!12239-129G7;0.504308!12240-129G8;0.352953!10416-106C2;0.610177!10801-110I9;0.0126251!10766-110F1;0.0117666!10824-111C5;0.112242!10825-111C6;0.228562!10826-111C7;0.319376!10454-106G4;0.204226!10409-106B4;0.22112!10638-108I8;0.217395!10636-108I6;0.0267251!10513-107D9;0.098722!10420-106C6;0.401502!10082-102B1;0.692274!10014-101C5;0.0448905!10070-101I7;0.0426428!10452-106G2;0.0110413!10453-106G3;0.032793!10449-106F8;0.0218511!10042-101F6;0.0225904!10069-101I6;0.00242858!10193-103E4;0.0738117!10631-108I1;0.000600144!10438-106E6;0.0315565!10488-107B2;0.0889287!10196-103E7;0.452002!10071-101I8;0.0341402!10071-101I8;0.0536966!10041-101F5;0.00272995!10451-106G1;0.0387246!10450-106F9;0.513764!10604-108F1;0.937128!10605-108F2;0.202941!10606-108F3;0.160178!10603-108E9;0.09881!10497-107C2;0.424313!10448-106F7;0.773051!10643-109A4;0.305369!10426-106D3;0.661027!10431-106D8;0.296842!10197-103E8;0.325807!10443-106F2;0.00290881!10815-111B5;0.873689!10816-111B6;0.0705064!10817-111B7;0.0513052!10015-101C6;0.0612197!10410-106B5;0.0169065!10054-101G9;0.408829!10758-110E2;0.016553!10711-109H9;0.0489104!10040-101F4;0.002363!10470-106I2;0.00068226!10415-106C1;0.317736!10198-103E9;0.0526137!10614-108G2;0.0594075!10612-108F9;0.0524324!10549-107H9;0.449622!10615-108G3;0.359666!10487-107B1;0.605025!10433-106E1;0.00363207!10688-109F4;0.458438!10444-106F3;0.734224!10444-106F3;0.0481655!10485-107A8;0.0416382!10413-106B8;0.82147!10175-103C4;0.0185632!10161-103A8;0.0175896!12131-128D7;0.00176848!10624-108H3;0.17848!10712-109I1;0.983161!10205-103F7;0.273815!10206-103F8;0.0849852!10207-103F9;0.0149141!10050-101G5;0.79043!10051-101G6;0.0130065!10016-101C7;0.0509803!10046-101G1;0.0879913!10778-110G4;0.0719453!10633-108I3;0.733127!10818-111B8;0.750809!10819-111B9;0.0903405!10820-111C1;0.101643!10484-107A7;0.109517!10808-111A7;0.498954!10169-103B7;0.033175!10153-102I9;0.00317404!13425-144D5;0.000125499!13433-144E4;0.984253!13437-144E8;0.884361!11904-125F5;0.866546!11905-125F6;0.17612!10039-101F3;0.269675!10791-110H8;0.00070708!10017-101C8;0.128103!10045-101F9;0.0636046!10509-107D5;0.00343266!10839-111E2;0.0186248!10692-109F8;0.709027!10079-102A7;0.89661!10078-102A6;0.0555396!10721-110A1;0.08328!10569-108B2;0.30161!10570-108B3;0.77842!10571-108B4;0.96353!10647-109A8;0.735018!10752-110D5;0.176489!10782-110G8;0.214958!10726-110A6;0.122791!10018-101C9;0.909565!10086-102B5;0.957114!10182-103D2;0.947314!10165-103B3;0.00368927!10499-107C4;0.00191651!10408-106B3;0.417683!10019-101D1;0.00737142!10068-101I5;0.32507!10075-102A3;0.180259!10077-102A5;0.155296!10727-110A7;0.549233!10775-110G1;0.0149866!10412-106B7;0.0262071!12231-129F8;0.89935!12232-129F9;0.421272!12233-129G1;0.150822!12234-129G2;0.603629!10414-106B9;0.752797!10170-103B8;0.163552!10183-103D3;0.0129118!10150-102I6;0.00120621!10174-103C3;0.000447639!10155-103A2;0.00900376!10038-101F2;0.00220921!10838-111E1;0.00150845!10759-110E3;0.794745!10514-107E1;0.415234!10465-106H6;0.105808!10691-109F7;0.038964!10843-111E6;0.154635!10844-111E7;0.60716!11747-123G1;0.261177!11748-123G2;0.176413!11749-123G3;0.689723!11750-123G4;0.310728!11751-123G5;0.561313!11840-124H4;0.864408!11752-123G6;0.766858!11753-123G7;0.265031!11754-123G8;0.265717!11755-123G9;0.327136!11756-123H1;0.261384!11833-124G6;0.900814!11760-123H5;0.856076!11836-124G9;0.859126!11758-123H3;0.671333!11835-124G8;0.642596!11762-123H7;0.113442!11838-124H2;0.442814!11757-123H2;0.727488!11759-123H4;0.709256!11761-123H6;0.720261!11842-124H6;0.671887!11837-124H1;0.659958!10568-108B1;0.196747!13230-141I8;0.494441!13231-141I9;0.30142!10696-109G3;0.153424!10493-107B7;0.487501!10494-107B8;0.0653071!10850-111F4;0.616162!10851-111F5;0.712841!10852-111F6;0.105537!10853-111F7;0.11432!10854-111F8;0.48049!10855-111F9;0.938123!10856-111G1;0.96531!10847-111F1;0.918812!10846-111E9;0.327137!10848-111F2;0.0732712!10845-111E8;0.00329995!10857-111G2;0.340133!10858-111G3;0.604413!10156-103A3;0.0729693!11901-125F2;0.000149849!11902-125F3;0.414629!11903-125F4;0.386277!10689-109F5;0.248324!10648-109A9;0.611429!10784-110H1;0.00391807!10744-110C6;0.387972!10772-110F7;0.00198374!10474-106I6;0.0746946!10600-108E6;0.000125416!10684-109E9;0.68095!12226-129F3;0.379701!12227-129F4;0.435608!10508-107D4;0.0773255!10539-107G8;0.798307!10607-108F4;0.610883!10555-107I6;0.500483!10774-110F9;0.488882!10637-108I7;0.783629!10663-109C6;0.528608!10728-110A8;0.979944!10729-110A9;0.832694!10430-106D7;0.726449!10730-110B1;0.0646636!10813-111B3;0.275262!10812-111B2;0.572617!10037-101F1;0.369557!10172-103C1;0.000401694!10163-103B1;0.00533458!10076-102A4;0.00016263!10073-102A1;0.000492662!10036-101E9;0.0103638!10195-103E6;0.000190669!10277-104E7;0.000149188!10434-106E2;0.0493208!10550-107I1;0.253254!10545-107H5;0.525706!10544-107H4;0.250147!10704-109H2;0.397299!10510-107D6;0.190162!10558-107I9;0.38705!10020-101D2;0.325611!10732-110B3;0.0953972!10049-101G4;0.145531!10698-109G5;0.780077!10437-106E5;0.0296634!10417-106C3;0.120092!10035-101E8;0.489557!10171-103B9;0.00078612!10157-103A4;0.00658438!10034-101E7;0.000634789!10072-101I9;0.000918818!10199-103F1;0.0123665!10200-103F2;0.882941!10697-109G4;0.00833492!10723-110A3;0.973474!10179-103C8;0.846593!10160-103A7;0.0201151!10180-103C9;0.0128552!10162-103A9;0.45136!10021-101D3;0.425622!10840-111E3;0.332617!10706-109H4;0.114584!10033-101E6;0.317835!10032-101E5;0.000398345!10490-107B4;0.000761631!10439-106E7;0.121984!10022-101D4;0.318673!10176-103C5;0.0735829!10469-106I1;0.00161366!10067-101I4;0.85249!10411-106B6;0.00704904!10471-106I3;0.047977!10030-101E3;0.19785!10475-106I7;0.00718495!10787-110H4;0.531689!10477-106I9;0.996092!10695-109G2;0.246202!11771-123I7;0.777976!11772-123I8;0.450704!11773-123I9;0.76294!10093-102C3;0.603045!10442-106F1;0.571818!10442-106F1;0.729216!10201-103F3;0.657644!10639-108I9;0.0589044!11843-124H7;0.901611!11841-124H5;0.142524!10693-109F9;0.154879!10436-106E4;0.342665!10483-107A6;0.0286882!10282-104F3;0.0231436!10023-101D5;0.039524!10066-101I3;0.0426086!10065-101I2;0.0177114!10800-110I8;0.0146831!10610-108F7;0.66417!10841-111E4;0.800743!10541-107H1;0.710218!10842-111E5;0.980355!10562-108A4;0.56006!10024-101D6;0.659134!10064-101I1;0.173045!10609-108F6;0.0328164!10048-101G3;0.864919!10781-110G7;0.0975653!10181-103D1;0.353428!10159-103A6;0.00265732!10056-101H2;0.00248649!10737-110B8;0.000676547!10025-101D7;0.443139!10044-101F8;0.957914!10424-106D1;0.348598!10463-106H4;0.0725516!10616-108G4;0.0568833!10486-107A9;0.0997082!10062-101H8;0.0208266!10202-103F4;0.331046!10158-103A5;0.275328!10441-106E9;0.00785127!10031-101E4;0.240819!10063-101H9;0.000305931!10063-101H9;0.00209748!11763-123H8;0.0218671!11765-123I1;0.470552!11768-123I4;0.537407!10807-111A6;0.452687!10790-110H7;0.854069!10798-110I6;0.314122!10786-110H3;0.497582!10591-108D6;0.930491!10593-108D8;0.709574!10590-108D5;0.95715!10026-101D8;0.229368!10096-102C6;0.00098586!10168-103B6;0.0218142!10154-103A1;0.00234008!10209-103G2;0.00113493!10061-101H7;0.0119752!10027-101D9;0.0520542!10043-101F7;0.584917!10783-110G9;0.650044!10028-101E1;0.00775148!10060-101H6;0.659931!10203-103F5;0.0753988!10059-101H5;0.018297!10047-101G2;0.0202925!10029-101E2;0.360153!10058-101H4;0.437806!10418-106C4;0.0986409!10492-107B6;0.325413!10694-109G1;0.174429!10797-110I5;0.253913!10057-101H3;0.413871!10100-102D1;0.107616!10055-101H1;0.0216106!10204-103F6;0.0126814!10191-103E2;0.194497!10563-108A5;0.0363608
|name=14-TTAMCGKAA,CNhs13495,BestGuess:Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer(0.726352248535498),T:311.0(5.24%),B:1047.9(2.44%),P:1e-33
|name=14-TTAMCGKAA,CNhs13495,BestGuess:Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer(0.726352248535498),T:311.0(5.24%),B:1047.9(2.44%),P:1e-33
|tomtom_result=YBR239C#MA0420.1;-2;0.00226882;1.07996;0.665966;7;TTACCGTAA;ACCGGAAC;+!HAL9#MA0311.1;-4;0.00288578;1.37363;0.665966;5;TTACCGTAA;CGGAA;+!ELK1#MA0028.1;0;0.00380982;1.81348;0.665966;9;TTACCGTAA;GAGCCGGAAG;+!FOXF2#MA0030.1;0;0.00392991;1.87064;0.665966;9;TTACCGTAA;CAAACGTAAACAAT;+!ELK4#MA0076.1;-2;0.00514302;2.44808;0.665966;7;TTACCGTAA;ACCGGAAGT;+!GABPA#MA0062.1;-2;0.00544755;2.59303;0.665966;7;TTACCGTAA;ACCGGAAGAG;+!Eip74EF#MA0026.1;-3;0.00607673;2.89252;0.665966;6;TTACCGTAA;CCGGAAG;+!SPIB#MA0081.1;-2;0.00607673;2.89252;0.665966;7;TTACCGTAA;AGAGGAA;+!Stat3#MA0144.1;1;0.00633638;3.01612;0.665966;9;TTACCGTAA;CTTCCTGGAA;-!STAT1#MA0137.2;3;0.00745388;3.54804;0.705076;9;TTACCGTAA;CATTTCCCGGAAACC;+!ASG1#MA0275.1;-3;0.00946029;4.5031;0.730028;6;TTACCGTAA;CCGGAA;+!LYS14#MA0325.1;-3;0.0105665;5.02965;0.730028;6;TTACCGTAA;CCGGAATT;+!YPR015C#MA0435.1;2;0.011265;5.36215;0.730028;9;TTACCGTAA;TGAAGACGTAAATCCTTACA;+!run::Bgb#MA0242.1;0;0.0128456;6.11452;0.730028;9;TTACCGTAA;TAACCGCAA;+!CIN5#MA0284.1;-1;0.0139034;6.61802;0.730028;8;TTACCGTAA;TTACGTAATC;+!YAP3#MA0416.1;-2;0.0144068;6.85764;0.730028;7;TTACCGTAA;TACGTAAT;-!HOXA5#MA0158.1;2;0.0151556;7.21407;0.730028;6;TTACCGTAA;AATTAGTG;-!YKL222C#MA0428.1;-2;0.0171004;8.13979;0.730028;7;TTACCGTAA;AACGGAAAT;+!CAT8#MA0280.1;-3;0.0171105;8.14459;0.730028;6;TTACCGTAA;CCGGAA;+!DAL80#MA0289.1;1;0.0171394;8.15836;0.730028;6;TTACCGTAA;CTTATCG;-!YER184C#MA0424.1;-1;0.0185085;8.81003;0.730028;8;TTACCGTAA;CTCCGGAA;+!gt#MA0447.1;0;0.0192942;9.18402;0.730028;9;TTACCGTAA;ATTACGTAAT;+
}}
}}

Latest revision as of 18:17, 7 September 2012

Full Name: 14-TTAMCGKAA,CNhs13495,BestGuess:Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer(0.726352248535498),T:311.0(5.24%),B:1047.9(2.44%),P:1e-33

Motif matrix
POACGT
10.31112.1290.311298.249
222.3920.3116.22282.077
3229.8296.2231.143.851
499.831143.0653.49214.617
50.311310.0670.3110.311
60.3110.311310.0670.311
70.6220.311143.06167.007
8290.7850.31119.5930.311
9310.0670.3110.3110.311

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YBR239C#MA0420.1-20.002268821.079960.6659667TTACCGTAAACCGGAAC+
HAL9#MA0311.1-40.002885781.373630.6659665TTACCGTAACGGAA+
ELK1#MA0028.100.003809821.813480.6659669TTACCGTAAGAGCCGGAAG+
FOXF2#MA0030.100.003929911.870640.6659669TTACCGTAACAAACGTAAACAAT+
ELK4#MA0076.1-20.005143022.448080.6659667TTACCGTAAACCGGAAGT+
GABPA#MA0062.1-20.005447552.593030.6659667TTACCGTAAACCGGAAGAG+
Eip74EF#MA0026.1-30.006076732.892520.6659666TTACCGTAACCGGAAG+
SPIB#MA0081.1-20.006076732.892520.6659667TTACCGTAAAGAGGAA+
Stat3#MA0144.110.006336383.016120.6659669TTACCGTAACTTCCTGGAA-
STAT1#MA0137.230.007453883.548040.7050769TTACCGTAACATTTCCCGGAAACC+
ASG1#MA0275.1-30.009460294.50310.7300286TTACCGTAACCGGAA+
LYS14#MA0325.1-30.01056655.029650.7300286TTACCGTAACCGGAATT+
YPR015C#MA0435.120.0112655.362150.7300289TTACCGTAATGAAGACGTAAATCCTTACA+
run::Bgb#MA0242.100.01284566.114520.7300289TTACCGTAATAACCGCAA+
CIN5#MA0284.1-10.01390346.618020.7300288TTACCGTAATTACGTAATC+
YAP3#MA0416.1-20.01440686.857640.7300287TTACCGTAATACGTAAT-
HOXA5#MA0158.120.01515567.214070.7300286TTACCGTAAAATTAGTG-
YKL222C#MA0428.1-20.01710048.139790.7300287TTACCGTAAAACGGAAAT+
CAT8#MA0280.1-30.01711058.144590.7300286TTACCGTAACCGGAA+
DAL80#MA0289.110.01713948.158360.7300286TTACCGTAACTTATCG-
YER184C#MA0424.1-10.01850858.810030.7300288TTACCGTAACTCCGGAA+
gt#MA0447.100.01929429.184020.7300289TTACCGTAAATTACGTAAT+
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