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MacroAPE 1083:13-STTYSWCWTCY: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.856;113.216;116.464;0.464!2;1.392;0.928;92.336;137.344!3;47.56;52.664;2.784;128.992!4;3.016;88.16;45.472;95.352!5;35.032;88.16;63.8;45.24!...")
 
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9A5;0.00655657!12184-129A6;0.0111077!10809-111A8;0.0137939!10597-108E3;0.537474!10717-109I6;0.154896!10455-106G5;0.0298708!10534-107G3;0.388424!10429-106D6;0.829153!10464-106H5;0.98622!10827-111C8;0.712245!10789-110H6;0.740823!10828-111C9;0.44348!10788-110H5;0.252973!10792-110H9;0.571694!10765-110E9;0.278655!10829-111D1;0.387772!10830-111D2;0.526146!10831-111D3;0.743379!10832-111D4;0.659159!10833-111D5;0.301295!10764-110E8;0.34404!10770-110F5;0.890794!10399-106A3;0.44269!10400-106A4;0.831825!10405-106A9;0.902501!10834-111D6;0.99252!10835-111D7;0.356125!10836-111D8;0.581769!10837-111D9;0.666646!10699-109G6;0.881337!10802-111A1;0.630865!10796-110I4;0.506716!10010-101C1;0.222685!10810-111A9;0.175608!10421-106C7;0.176196!10708-109H6;0.774919!12235-129G3;0.610024!12236-129G4;0.274325!12237-129G5;0.0347349!10167-103B5;0.410318!10151-102I7;0.415806!10428-106D5;0.378885!10795-110I3;0.626387!10805-111A4;0.529317!10052-101G7;0.159301!10189-103D9;0.985092!10589-108D4;0.984718!10425-106D2;0.119961!10427-106D4;0.199718!10702-109G9;0.397222!10432-106D9;0.730427!10496-107C1;0.747674!10718-109I7;0.450782!10011-101C2;0.695548!10053-101G8;0.673846!10686-109F2;0.000361707!10084-102B3;0.99417!10012-101C3;0.155756!10085-102B4;0.286846!10482-107A5;0.19254!10419-106C5;0.409007!10080-102A8;0.376573!10760-110E4;0.656983!10709-109H7;0.195882!10710-109H8;0.417097!10703-109H1;0.287988!10719-109I8;0.0375892!10642-109A3;0.000838415!10177-103C6;0.0159868!10164-103B2;0.400141!10173-103C2;0.408457!10166-103B4;0.470456!10083-102B2;0.50997!10188-103D8;0.394801!10552-107I3;0.243654!10553-107I4;0.156801!10013-101C4;0.0430923!10536-107G5;0.474098!10618-108G6;0.599873!10423-106C9;0.821736!10785-110H2;0.292994!12238-129G6;0.85852!12239-129G7;0.544318!12240-129G8;0.636817!10416-106C2;0.589001!10801-110I9;0.509462!10766-110F1;0.648705!10824-111C5;0.718001!10825-111C6;0.8812!10826-111C7;0.825773!10454-106G4;0.696554!10409-106B4;0.342829!10638-108I8;0.806442!10636-108I6;0.692869!10513-107D9;0.158756!10420-106C6;0.127621!10082-102B1;0.27208!10014-101C5;0.202895!10070-101I7;0.464148!10452-106G2;0.28564!10453-106G3;0.53535!10449-106F8;0.561729!10042-101F6;0.703376!10069-101I6;0.308047!10193-103E4;0.956123!10631-108I1;0.264611!10438-106E6;0.461966!10488-107B2;0.018553!10196-103E7;0.776409!10071-101I8;0.326411!10071-101I8;0.101688!10041-101F5;0.300728!10451-106G1;0.618333!10450-106F9;0.307726!10604-108F1;0.0744781!10605-108F2;0.425785!10606-108F3;0.74251!10603-108E9;0.588605!10497-107C2;0.731013!10448-106F7;0.0478911!10643-109A4;0.248867!10426-106D3;0.391704!10431-106D8;0.0589738!10197-103E8;0.271728!10443-106F2;0.577586!10815-111B5;0.165109!10816-111B6;0.429656!10817-111B7;0.297945!10015-101C6;0.501716!10410-106B5;0.405224!10054-101G9;0.864369!10758-110E2;0.328209!10711-109H9;0.870101!10040-101F4;0.696936!10470-106I2;0.287101!10415-106C1;0.174741!10198-103E9;0.912251!10614-108G2;0.700327!10612-108F9;0.0539933!10549-107H9;0.658701!10615-108G3;0.273851!10487-107B1;0.135415!10433-106E1;0.644419!10688-109F4;0.673531!10444-106F3;0.0507749!10444-106F3;0.250937!10485-107A8;0.334688!10413-106B8;0.362902!10175-103C4;0.0189328!10161-103A8;0.261397!12131-128D7;0.321134!10624-108H3;0.191916!10712-109I1;0.678411!10205-103F7;0.836867!10206-103F8;0.415072!10207-103F9;0.531849!10050-101G5;0.0820133!10051-101G6;0.861374!10016-101C7;0.192938!10046-101G1;0.200599!10778-110G4;0.438357!10633-108I3;0.397314!10818-111B8;0.0966283!10819-111B9;0.32995!10820-111C1;0.365109!10484-107A7;0.352449!10808-111A7;0.354778!10169-103B7;0.866387!10153-102I9;0.489963!13425-144D5;0.405855!13433-144E4;0.0103419!13437-144E8;0.0091516!11904-125F5;0.00595183!11905-125F6;0.0268717!10039-101F3;0.45434!10791-110H8;0.257582!10017-101C8;0.274138!10045-101F9;0.994058!10509-107D5;0.315026!10839-111E2;0.561772!10692-109F8;0.276659!10079-102A7;0.0224969!10078-102A6;0.33479!10721-110A1;0.0819266!10569-108B2;0.503383!10570-108B3;0.836496!10571-108B4;0.960405!10647-109A8;0.960302!10752-110D5;0.00454244!10782-110G8;0.981607!10726-110A6;0.590961!10018-101C9;0.304446!10086-102B5;0.243481!10182-103D2;0.73561!10165-103B3;0.21153!10499-107C4;0.299517!10408-106B3;0.787491!10019-101D1;0.187675!10068-101I5;0.883189!10075-102A3;0.812858!10077-102A5;0.822739!10727-110A7;0.0322909!10775-110G1;0.211743!10412-106B7;0.213157!12231-129F8;0.377636!12232-129F9;0.226936!12233-129G1;0.145462!12234-129G2;0.211286!10414-106B9;0.501565!10170-103B8;0.370101!10183-103D3;0.295907!10150-102I6;0.268223!10174-103C3;0.302056!10155-103A2;0.378884!10038-101F2;0.340404!10838-111E1;0.3088!10759-110E3;0.0798836!10514-107E1;0.154759!10465-106H6;0.956602!10691-109F7;0.713456!10843-111E6;0.374973!10844-111E7;0.328889!11747-123G1;0.0335954!11748-123G2;0.752711!11749-123G3;0.594041!11750-123G4;0.525882!11751-123G5;0.648354!11840-124H4;0.553635!11752-123G6;0.695275!11753-123G7;0.975628!11754-123G8;0.321764!11755-123G9;0.660189!11756-123H1;0.848284!11833-124G6;0.379568!11760-123H5;0.833343!11836-124G9;0.190673!11758-123H3;0.187581!11835-124G8;0.190055!11762-123H7;0.804983!11838-124H2;0.191376!11757-123H2;0.764155!11759-123H4;0.394708!11761-123H6;0.540275!11842-124H6;0.18072!11837-124H1;0.179471!10568-108B1;0.439896!13230-141I8;0.128466!13231-141I9;0.928327!10696-109G3;0.954675!10493-107B7;0.994184!10494-107B8;0.965082!10850-111F4;0.781188!10851-111F5;0.241956!10852-111F6;0.787429!10853-111F7;0.29902!10854-111F8;0.686974!10855-111F9;0.937213!10856-111G1;0.947435!10847-111F1;0.880839!10846-111E9;0.179924!10848-111F2;0.882811!10845-111E8;0.771409!10857-111G2;0.894028!10858-111G3;0.475381!10156-103A3;0.294989!11901-125F2;0.304766!11902-125F3;0.0331796!11903-125F4;0.0152589!10689-109F5;0.0430696!10648-109A9;0.185451!10784-110H1;0.506825!10744-110C6;0.988036!10772-110F7;0.481503!10474-106I6;0.475134!10600-108E6;0.176369!10684-109E9;0.394268!12226-129F3;0.8493!12227-129F4;0.0120157!10508-107D4;0.0895706!10539-107G8;0.321595!10607-108F4;0.410154!10555-107I6;0.0591629!10774-110F9;0.278425!10637-108I7;0.0288801!10663-109C6;0.110112!10728-110A8;0.00932902!10729-110A9;0.0670121!10430-106D7;0.241805!10730-110B1;0.854697!10813-111B3;0.023875!10812-111B2;0.0861165!10037-101F1;0.653321!10172-103C1;0.301039!10163-103B1;0.232539!10076-102A4;0.349215!10073-102A1;0.20483!10036-101E9;0.222417!10195-103E6;0.255982!10277-104E7;0.301494!10434-106E2;0.459986!10550-107I1;0.0292036!10545-107H5;0.0472343!10544-107H4;0.191904!10704-109H2;0.0309922!10510-107D6;0.29451!10558-107I9;0.459953!10020-101D2;0.227849!10732-110B3;0.875011!10049-101G4;0.748271!10698-109G5;0.791009!10437-106E5;0.629656!10417-106C3;0.726195!10035-101E8;0.841027!10171-103B9;0.242193!10157-103A4;0.291091!10034-101E7;0.343081!10072-101I9;0.244433!10199-103F1;0.162759!10200-103F2;0.624098!10697-109G4;0.586499!10723-110A3;0.037951!10179-103C8;0.0833611!10160-103A7;0.27485!10180-103C9;0.293169!10162-103A9;0.425878!10021-101D3;0.374678!10840-111E3;0.869191!10706-109H4;0.458499!10033-101E6;0.105588!10032-101E5;0.236409!10490-107B4;0.217009!10439-106E7;0.277721!10022-101D4;0.137699!10176-103C5;0.515744!10469-106I1;0.416427!10067-101I4;0.161753!10411-106B6;0.22118!10471-106I3;0.209354!10030-101E3;0.17279!10475-106I7;0.510538!10787-110H4;0.128877!10477-106I9;0.313782!10695-109G2;0.135362!11771-123I7;0.043295!11772-123I8;0.0761372!11773-123I9;0.222576!10093-102C3;0.060085!10442-106F1;0.45734!10442-106F1;0.796777!10201-103F3;0.721135!10639-108I9;0.305373!11843-124H7;0.415407!11841-124H5;0.874743!10693-109F9;0.812198!10436-106E4;0.152696!10483-107A6;0.855376!10282-104F3;0.717882!10023-101D5;0.782342!10066-101I3;0.904174!10065-101I2;0.612613!10800-110I8;0.511539!10610-108F7;0.0885004!10841-111E4;0.286466!10541-107H1;0.142702!10842-111E5;0.207789!10562-108A4;0.0327137!10024-101D6;0.0972636!10064-101I1;0.755729!10609-108F6;0.768597!10048-101G3;0.0405696!10781-110G7;0.70256!10181-103D1;0.0233855!10159-103A6;0.426562!10056-101H2;0.482013!10737-110B8;0.381554!10025-101D7;0.206608!10044-101F8;0.00233916!10424-106D1;0.049603!10463-106H4;0.117436!10616-108G4;0.12694!10486-107A9;0.638391!10062-101H8;0.951348!10202-103F4;0.661756!10158-103A5;0.956293!10441-106E9;0.540763!10031-101E4;0.148088!10063-101H9;0.225041!10063-101H9;0.254426!11763-123H8;0.504685!11765-123I1;0.679381!11768-123I4;0.673551!10807-111A6;0.919136!10790-110H7;0.0465229!10798-110I6;0.0729735!10786-110H3;0.036141!10591-108D6;0.402348!10593-108D8;0.126332!10590-108D5;0.135762!10026-101D8;0.578194!10096-102C6;0.761052!10168-103B6;0.75982!10154-103A1;0.337261!10209-103G2;0.333377!10061-101H7;0.566724!10027-101D9;0.495233!10043-101F7;0.24701!10783-110G9;0.508504!10028-101E1;0.345766!10060-101H6;0.717103!10203-103F5;0.635101!10059-101H5;0.742975!10047-101G2;0.656889!10029-101E2;0.742685!10058-101H4;0.651413!10418-106C4;0.620584!10492-107B6;0.059051!10694-109G1;0.151504!10797-110I5;0.206697!10057-101H3;0.447323!10100-102D1;0.926225!10055-101H1;0.864028!10204-103F6;0.178618!10191-103E2;0.889315!10563-108A5;0.295216
|name=13-STTYSWCWTCY,CNhs13546,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.739002763202313),T:232.0(4.97%),B:858.6(1.94%),P:1e-35
|name=13-STTYSWCWTCY,CNhs13546,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.739002763202313),T:232.0(4.97%),B:858.6(1.94%),P:1e-35
|tomtom_result=GATA2#MA0036.1;-6;0.00181371;0.863327;1;5;GTTTCTCATCT;TATCC;-!Gata1#MA0035.2;-2;0.00440758;2.09801;1;9;GTTTCTCATCT;TTCTTATCTGT;-!ETS1#MA0098.1;-6;0.00652291;3.10491;1;5;GTTTCTCATCT;CTTCCG;+!SUT2#MA0400.1;11;0.00670472;3.19145;1;9;GTTTCTCATCT;AAATTTTCGGAGTTTATCAT;-!Hltf#MA0109.1;-1;0.00818543;3.89626;1;10;GTTTCTCATCT;AACCTTATAT;+!GABPA#MA0062.2;-2;0.00990737;4.71591;1;9;GTTTCTCATCT;GCCACTTCCGG;-!Pou5f1#MA0142.1;0;0.012467;5.93431;1;11;GTTTCTCATCT;CTTTGTTATGCAAAT;+!id1#MA0120.1;1;0.0127512;6.06955;1;11;GTTTCTCATCT;TTTTCCTTTTCG;+!Klf4#MA0039.1;1;0.0155458;7.39982;1;9;GTTTCTCATCT;CCTTCCTTTA;-!GZF3#MA0309.1;-3;0.0172221;8.19772;1;8;GTTTCTCATCT;TCTTATCA;-!DOT6#MA0351.1;-1;0.0173874;8.27641;1;10;GTTTCTCATCT;TTCTGCACCTCATCGCATCCT;+!HMG-I/Y#MA0045.1;3;0.0185542;8.83179;1;11;GTTTCTCATCT;GTTTTTCCATTTGTTG;-!ELF5#MA0136.1;-4;0.0188418;8.96869;1;7;GTTTCTCATCT;TACTTCCTT;+
}}
}}

Latest revision as of 18:18, 7 September 2012

Full Name: 13-STTYSWCWTCY,CNhs13546,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.739002763202313),T:232.0(4.97%),B:858.6(1.94%),P:1e-35

Motif matrix
POACGT
11.856113.216116.4640.464
21.3920.92892.336137.344
347.5652.6642.784128.992
43.01688.1645.47295.352
535.03288.1663.845.24
6113.681.8562.32114.144
737.584119.0162.55272.848
8101.3842.08830.62497.904
91.3922.0881.16227.36
103.48153.1272.8482.552
1143.15270.29630.39288.16

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GATA2#MA0036.1-60.001813710.86332715GTTTCTCATCTTATCC-
Gata1#MA0035.2-20.004407582.0980119GTTTCTCATCTTTCTTATCTGT-
ETS1#MA0098.1-60.006522913.1049115GTTTCTCATCTCTTCCG+
SUT2#MA0400.1110.006704723.1914519GTTTCTCATCTAAATTTTCGGAGTTTATCAT-
Hltf#MA0109.1-10.008185433.89626110GTTTCTCATCTAACCTTATAT+
GABPA#MA0062.2-20.009907374.7159119GTTTCTCATCTGCCACTTCCGG-
Pou5f1#MA0142.100.0124675.93431111GTTTCTCATCTCTTTGTTATGCAAAT+
id1#MA0120.110.01275126.06955111GTTTCTCATCTTTTTCCTTTTCG+
Klf4#MA0039.110.01554587.3998219GTTTCTCATCTCCTTCCTTTA-
GZF3#MA0309.1-30.01722218.1977218GTTTCTCATCTTCTTATCA-
DOT6#MA0351.1-10.01738748.27641110GTTTCTCATCTTTCTGCACCTCATCGCATCCT+
HMG-I/Y#MA0045.130.01855428.83179111GTTTCTCATCTGTTTTTCCATTTGTTG-
ELF5#MA0136.1-40.01884188.9686917GTTTCTCATCTTACTTCCTT+
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