Personal tools

MCL coexpression mm9:243: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0016055;Wnt receptor signaling pathway;0.0160544875326414;22402,16971,21886!GO:0050794;regulation of cellular process;0.01...")
 
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0016055;Wnt receptor signaling pathway;0.0160544875326414;22402,16971,21886!GO:0050794;regulation of cellular process;0.0160544875326414;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0048523;negative regulation of cellular process;0.0167036526195371;17311,20583,19335,16971,22762!GO:0050789;regulation of biological process;0.0167036526195371;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0048519;negative regulation of biological process;0.0167036526195371;17311,20583,19335,16971,22762!GO:0032502;developmental process;0.0167036526195371;22402,17311,20583,19335,18491,16971,13591,22762!GO:0031323;regulation of cellular metabolic process;0.0167036526195371;17311,20583,75646,19335,13591,22762,21886!GO:0019222;regulation of metabolic process;0.0182742041175836;17311,20583,75646,19335,13591,22762,21886!GO:0065007;biological regulation;0.0182742041175836;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0043170;macromolecule metabolic process;0.0370865490371531;75646,21886,17311,223649,18491,19335,56878,20583,13591,22762!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0579398922470937,-0.0471437779386898,-0.0579137388141481,-0.0565385683111846,-0.0629855349750968,-0.0697792781235438,-0.0749775948743338,-0.102633070958426,-0.14009124925022,-0.135832109755247,-0.165497998232095,-0.16521326014504,-0.129729500073098,-0.107773809695331,-0.108358689889745,-0.073466070766403,-0.148211709511743,-0.0852976935087666,-0.091678760712577,-0.0848721898714305,0.122971307242449,-0.119737455420426,-0.133291578671764,-0.0465528680872856,-0.0759297648542163,-0.0807783110403499,-0.0716878107564533,-0.0724421183054768,-0.0682257359414869,-0.0808075263296411,-0.0750336493783464,-0.180610743365664,-0.180610743365664,-0.180610743365664,-0.111131047987805,-0.105634710502224,-0.0922411115895874,-0.156142323586268,-0.17323587027502,-0.169854906480372,-0.164767652607635,-0.142069566758554,-0.175555576221622,0.293486404615546,0.298245676065974,0.203013879620855,0.0656565363675261,-0.0366472815004801,-0.0251097830496218,0.00740628360835412,0.0447227962808644,-0.104498524971051,-0.103031413601979,-0.130186466397733,-0.134494633735009,0.123800750468836,0.115966488258425,0.13290475064159,-0.0169694934112577,-0.00442381095834886,0.00766025880080419,0.0325104115512432,-0.0267698235644957,-0.0663131580742025,-0.0874584923214071,-0.0575845099966115,-0.00104533803268348,-0.0352452070690529,0.0126454169900975,-0.00342091889957287,-0.00374321510313392,0.0329459345670728,0.0448244689841116,0.0191697784635701,0.0122017332392398,-0.0146919024484721,-0.0109883852423482,0.0269919452814771,0.00634146942647115,0.00341366928175434,-0.00239281233690888,0.020475770603024,-0.0308125607375027,0.0386834989432881,0.0207710901944533,0.0910469043768234,0.117234467870891,0.0416559381030757,0.0119615855413032,0.0409229819027395,0.109297196033213,-0.018787300645842,-0.0994244914312007,-0.038877772850089,-0.0649201360595913,-0.021445231359863,0.0313003439765744,0.368058548759532,0.338562337458063,0.2983176793664,0.071547448740507,0.849810305559362,1.31416146175772,0.781779737298155,-0.0489861930138497,-0.0565685841896298,-0.0583696640275193,0.0556589348622295,0.0570462306173373,0.0592853863727394,0.0801047777065574,0.0576224454624993,0.0591723255750913,0.0659976563568138,0.110432824608734,0.030377380462748,0.0840178913420228,0.124683748577394,-0.0217906296220432,0.150722765884655,0.140486325514361,0.177312835132326,-0.00485858384667008,0.0730957776806838,0.0748551189652771,-0.0227861711506127,-0.153659523875073,-0.15853511290962,-0.150754238450894,0.0133365060850658,0.000679495828680871,0.0173711399680393,0.0362353807697547,0.030952264576045,0.031958666183122,0.0177595662032938,0.172117103434384,0.116070496316214,0.00603995457265934,0.0232540433776245,0.0512167421825563,-0.0214817795135755,0.0265329498136203,0.111854049247012,0.0915603121623083,0.0665847770825088,0.0466976164966626,0.0954287505612064,-0.000548553976047071,0.0806646089443986,0.13909886025849,0.103234455391308,0.20102774842147,0.1403355567316,0.231469268939675,0.131316532770732,-0.155815467346112,-0.165720249513253,-0.161328532651732,0.0637294688175553,0.0959591428192141,0.0832836683373741,0.0655227628383821,0.133012664069823,0.109516322510741,0.0721798414978825,0.0845395935536793,0.106338310152823,0.0932689319998745,0.140098698104992,0.0944833296044535,0.0751087655220508,0.0924217448683011,0.0660339775658802,0.035015891570249,0.0600152350415839,-0.061019667236436,-0.0457107149430125,0.0851729044853542,0.110371377098188,0.048375068729316,0.025763528505939,0.0236666699256398,-0.000156842788427578,0.0129338512803104,-0.000909322772969278,0.0522749422729223,0.0364532584666961,0.0249930802839457,0.000201446154612366,0.0119842044807361,-0.00718982230643723,1.28737701737968e-06,0.0963109564694704,0.0580069212092847,0.0924125752887463,0.0904984109572908,0.120737905430193,0.11018246442967,0.0855665932575879,0.100230963819817,0.0441108364429034,-0.0367276555034203,-0.0485449861147531,-0.054553095261376,-0.0635154747495389,-0.0476273501801761,-0.0287285542265724,-0.028731958690196,-0.0183810018303588,0.00357803965405705,0.00310986283376634,0.122875061092768,0.066073630514041,0.0564862164787473,0.00333537825315703,-0.00208020490104257,-0.00950861855391075,0.14616333838161,0.056677587660517,0.0982770634052639,0.121159843517293,0.126702425732658,0.158815608084572,0.168358685215851,0.223100120208751,0.222103809109014,0.244403267419071,0.238000500112265,0.213514589134932,0.226018115917726,0.21106050248198,-0.10578882334161,-0.0641413553272714,0.0701664194899371,0.045817695799293,0.0255447514398666,0.0152092913311353,0.0813125945226969,0.112657535079632,0.00225011638552839,0.0321923104154978,0.0247912375996287,0.034418801972847,0.0303504861924807,0.0555865263620644,0.0488464927725566,0.0413632637279021,0.0311914251560685,0.0282540443987426,0.138404887653984,0.0966860544692731,0.152246185904487,0.128291419340668,-0.0734231641010231,-0.000331186927284986,-0.00724263980503988,-0.00828782191661765,-0.0542716124154986,0.0292568514796463,0.0638432990898822,0.0552949894818873,0.0784068091550609,0.0147343375918616,-0.0580395235702615,-0.0483931827984208,-0.0193040170882089,0.0521470285049155,0.008943388467375,0.03594659013612,0.0576908134882354,0.0850472136876138,0.098915114593318,-0.00224763238277122,0.04174757528015,0.0806159981590742,-0.0332501183976019,0.214597618183914,0.182881420245025,0.140697408084973,0.156702435213724,0.127012611491219,0.0446125627499277,0.0310431912679952,-0.0322252682566093,0.0822121142360385,0.0732334427478767,0.00926965930554868,0.029429130778188,0.0132658059051431,-0.122931351871603,-0.124981760741662,-0.119125689367911,0.0297353326923349,0.0335252761853432,0.0904728146017257,0.088636635622956,0.114902241229591,0.0982933921572946,0.0969673937593154,0.120420828296386,0.0496558023585512,0.0480187217958485,0.0495526358107964,-0.0606626052184466,0.131265119521752,0.0953098306842677,0.13365497554996,0.120680463749581,0.165166298657232,0.167800264489611,0.183689515159401,0.121725178367894,0.00765832659693634,0.0328197502457259,-0.0862123069633847,0.00501896627510577,0.0374529968882274,-0.0331902846151627,-0.0432801351825453,-0.0544994979601955,-0.0738498556626959,-0.0746654170755607,-0.0648562996851931,-0.083329704685903,-0.0898611074476441,-0.0783903832830435,-0.0912950795172225,-0.0822969563675201,0.0378409271282546,-0.0427840360605019,-0.0567828750583845,-0.0288384519880455,0.116009497335692,0.0968324030722786,0.0816066691670271,0.0151367848369893,-0.0193751736464286,0.0358518987598298,0.00722516432912641,-0.00594084801684918,0.0103727803543218,-0.0397931534011145,-0.0109914441222195,-0.0220508466011383,0.00263728730677104,0.0226068684950957,0.0187179559344144,0.027765141002034,0.0961692906569565,0.0879491888446376,0.110267153668329,0.0435934371617408,0.0640152281164017,0.0980551513350963,0.135137612277073,0.106307309011005,0.121236189172633,0.119761117096779,0.133619964971409,0.159587183699026,0.155655511469036,0.1618726064524,0.138279922066391,0.172312184519788,0.168107139705262,0.146784543176633,0.155145466862038,0.183146564133767,0.16129904025636,0.183278156530337,0.138508566781878,0.145217750735288,0.153848465730657,0.175851135768827,0.137800095118214,0.164192545812791,0.10467994866682,0.120126923600361,0.147577043773228,0.142066247712637,0.165190213615731,0.112430557929954,0.0829848000858406,0.120365434543712,0.109138730492357,0.156684030224881,0.11898348819333,0.102226541423663
|gostat_on_MCL_coexpression=GO:0016055;Wnt receptor signaling pathway;0.0160544875326414;22402,16971,21886!GO:0050794;regulation of cellular process;0.0160544875326414;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0048523;negative regulation of cellular process;0.0167036526195371;17311,20583,19335,16971,22762!GO:0050789;regulation of biological process;0.0167036526195371;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0048519;negative regulation of biological process;0.0167036526195371;17311,20583,19335,16971,22762!GO:0032502;developmental process;0.0167036526195371;22402,17311,20583,19335,18491,16971,13591,22762!GO:0031323;regulation of cellular metabolic process;0.0167036526195371;17311,20583,75646,19335,13591,22762,21886!GO:0019222;regulation of metabolic process;0.0182742041175836;17311,20583,75646,19335,13591,22762,21886!GO:0065007;biological regulation;0.0182742041175836;75646,21886,17311,22402,19335,20583,16971,13591,22762!GO:0043170;macromolecule metabolic process;0.0370865490371531;75646,21886,17311,223649,18491,19335,56878,20583,13591,22762!
}}

Revision as of 11:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120336953..120336957,+p@chr10:120336953..120336957
+
Mm9::chr10:127057998..127057999,-p9@Lrp1
Mm9::chr10:24848388..24848403,+p@chr10:24848388..24848403
+
Mm9::chr10:81037980..81037999,+p4@Tle2
Mm9::chr10:99478451..99478467,+p1@Kitl
Mm9::chr10:99513484..99513489,+p@chr10:99513484..99513489
+
Mm9::chr11:44431191..44431205,+p11@Ebf1
Mm9::chr11:44431626..44431637,+p10@Ebf1
Mm9::chr11:44512528..44512531,+p@chr11:44512528..44512531
+
Mm9::chr14:47007145..47007159,+p4@ENSMUST00000127359
Mm9::chr14:47007162..47007200,+p1@ENSMUST00000127359
Mm9::chr14:47007203..47007234,+p3@ENSMUST00000127359
Mm9::chr15:102758517..102758523,+p@chr15:102758517..102758523
+
Mm9::chr15:10644334..10644365,-p1@Rai14
Mm9::chr15:10644367..10644392,-p2@Rai14
Mm9::chr15:40486427..40486437,+p5@Zfpm2
Mm9::chr15:40486540..40486550,+p6@Zfpm2
Mm9::chr15:42921976..42921980,-p@chr15:42921976..42921980
-
Mm9::chr15:66722925..66722937,+p5@Wisp1
Mm9::chr15:66722940..66722951,+p2@Wisp1
Mm9::chr15:75922084..75922101,-p4@Nrbp2
Mm9::chr16:14705668..14705683,+p3@Snai2
Mm9::chr1:33776825..33776837,+p4@Rab23
Mm9::chr2:30450557..30450568,+p1@Cstad
Mm9::chr2:60800914..60800983,-p3@Rbms1
Mm9::chr2:61371539..61371556,+p@chr2:61371539..61371556
+
Mm9::chr3:83593895..83593914,-p1@ENSMUST00000149626
p1@uc008ppm.1
Mm9::chr3:99120411..99120426,+p@chr3:99120411..99120426
+
Mm9::chr4:64784782..64784802,+p2@Pappa
Mm9::chr5:107538347..107538352,-p@chr5:107538347..107538352
-
Mm9::chr5:125621239..125621259,-p@chr5:125621239..125621259
-
Mm9::chr8:93842016..93842018,+p@chr8:93842016..93842018
+
Mm9::chr9:42859433..42859444,-p@chr9:42859433..42859444
-
Mm9::chr9:44295313..44295348,+p5@Bcl9l


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016055Wnt receptor signaling pathway0.0160544875326414
GO:0050794regulation of cellular process0.0160544875326414
GO:0048523negative regulation of cellular process0.0167036526195371
GO:0050789regulation of biological process0.0167036526195371
GO:0048519negative regulation of biological process0.0167036526195371
GO:0032502developmental process0.0167036526195371
GO:0031323regulation of cellular metabolic process0.0167036526195371
GO:0019222regulation of metabolic process0.0182742041175836
GO:0065007biological regulation0.0182742041175836
GO:0043170macromolecule metabolic process0.0370865490371531



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:243&oldid=2145757"