Personal tools

MCL coexpression mm9:334: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0019198;transmembrane receptor protein phosphatase activity;0.0185175039719498;19273!GO:0005001;transmembrane receptor pro...")
 
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0019198;transmembrane receptor protein phosphatase activity;0.0185175039719498;19273!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0185175039719498;19273!GO:0021879;forebrain neuron differentiation;0.0475499523893807;16875!GO:0007191;dopamine receptor, adenylate cyclase activating pathway;0.0475499523893807;14680!GO:0004727;prenylated protein tyrosine phosphatase activity;0.0475499523893807;19273!GO:0021872;generation of neurons in the forebrain;0.0475499523893807;16875!GO:0007190;adenylate cyclase activation;0.0475499523893807;14680!GO:0045762;positive regulation of adenylate cyclase activity;0.0475499523893807;14680!GO:0031281;positive regulation of cyclase activity;0.0475499523893807;14680!GO:0051349;positive regulation of lyase activity;0.0475499523893807;14680!GO:0045761;regulation of adenylate cyclase activity;0.0475499523893807;14680!GO:0031279;regulation of cyclase activity;0.0475499523893807;14680!GO:0007212;dopamine receptor signaling pathway;0.0475499523893807;14680!GO:0051339;regulation of lyase activity;0.0475499523893807;14680!GO:0007185;transmembrane receptor protein tyrosine phosphatase signaling pathway;0.0493029557375933;19273!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.00823816521116629,-0.0147510195102575,-0.0147510195102575,-0.0099691112297885,-0.0147510195102575,-0.00913452364050824,-0.0147510195102575,0.0122686295852045,0.00553527473912178,0.0139686236634586,-0.00942212078014617,-0.00495892051351512,0.00176819889237559,-0.00901990649228204,-0.00954827331880121,-0.00282572418467673,-0.0147510195102575,0.00610613377457262,0.0100777617481408,-0.00834981909938808,0.0261944479211313,0.00953962906919199,0.0109328232473369,-0.00400849411464458,-0.0110136658695546,-0.0147510195102575,-0.0147510195102575,-0.0112199909859574,-0.011602873330366,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0101592311072308,-0.0147510195102575,-0.0113890373822223,-0.0147510195102575,-0.0147510195102575,-0.00713230171650925,0.0036509447778118,0.0246654073672329,-0.00758953272286463,-0.0104594701997832,-0.00558368674139236,-0.00604336793641842,-0.00429255849037696,-0.00761299800574457,-0.0111573485135087,-0.0115359917539782,-0.00763855969937143,0.00137186354513157,0.00520962741239258,-0.0147510195102575,0.00522866258642742,-0.0147510195102575,-0.0101918078853698,-0.0147510195102575,0.0815498585182373,0.0570585806350266,0.0673040292981053,0.0113123528405839,-0.0147510195102575,-0.00802797851173646,-0.0147510195102575,-0.00503776827302354,-0.0100089470266956,-0.00298397049489896,0.0494622073178375,0.0538897420256902,0.0428518339284329,0.0462865116982418,0.0693702629000181,0.274550082687221,0.23359035122095,0.250610963390666,0.0331815705744283,0.0309902722083848,0.0561732724900646,0.103302483726879,0.122820137937159,0.09631312038656,0.0265644715623972,0.0119629155209088,0.0451042058198886,0.0627436505726934,0.0749951790682869,0.0618943983705079,0.00138130432403745,0.00756749706680315,-0.0101450159125315,-0.00351719014855029,-0.00536344154446654,-0.00694114409275646,-0.0147510195102575,-0.0147510195102575,0.000450713240229337,-0.011903287651129,-0.00717929929473279,-0.0147510195102575,0.0100314716370763,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0073329996967095,-0.0147510195102575,0.00267011269678971,0.0119974989447917,-0.005581225341431,0.00516354853051488,-0.0147510195102575,-0.00148088054971826,0.00941271569614697,0.01062121274142,-0.00896210830296942,-0.0107537549325945,-0.00771046279614639,0.00368054851715211,-0.00300808820106976,0.00166925754307331,0.011914129802198,0.00428900216634942,0.00753055528272221,0.0141673905552495,-0.00651753104284571,0.000365852184997296,0.00387867916497428,0.00323893682711696,0.0613061653262752,0.177103716796073,0.809631181405988,0.0794897073834839,0.103963092471118,0.066704535486318,0.135568179687905,0.020132217887235,-0.00129426044081483,-0.00454016787264329,-0.0112950223123424,0.0322826235874206,0.0326989696831423,0.0383465264493727,0.046195219719578,0.0552496678007776,0.0343301064755327,0.0359533041534682,0.0119792863342163,0.0182486028808235,0.0274794121090989,0.0190994679261891,0.0253979291063474,0.0136812853831472,0.000220901325092417,0.00657212733885169,0.0127953781217197,-0.0147510195102575,-0.0064630642407239,0.000931326764497737,0.0200946279174881,0.0087700148802969,6.97689446538946e-06,0.0145278712357787,0.0146838703891789,-0.00345790591536133,0.01199853792338,-0.00406627184052811,-0.00443145322486273,-0.00749029305088554,0.000383900734860283,0.00134768618139523,-0.00981265289715781,-0.0147510195102575,-0.00862852797082612,0.0599456867703997,0.0923415153646039,-0.0147510195102575,-0.0105051088688973,0.0265238762370128,0.026350395235021,0.0152974339093517,0.00119248592392575,0.0145138296406459,-0.0034295133768078,-0.00772379715620742,-0.00748523808327387,0.000732774893160925,-0.000873200996633567,-0.0115279006185488,-0.0147510195102575,-0.0112100663160803,-0.0114647548759769,0.00641213806382101,0.0170859703328772,-0.00109338265840191,0.0130026301397616,0.0021996463267215,0.016680996578614,0.00174803596053842,-0.0081170487843525,-0.00776720509530079,-0.00865401363632164,-0.0147510195102575,0.0113312861378471,0.00234692423115557,0.000528760182176917,-0.0114087225565069,-0.00253026306081728,-0.0106462598433412,-0.0147510195102575,-0.00423060197107786,-0.0103609875827709,0.00976200195717954,-0.00330112577536404,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.0147510195102575,-0.00554753366137594,0.0275338096645401,0.00759103521348049,0.0134209039240106,0.00818967501840713,0.0115211011783253,0.0130517858121577,0.013042866299724,0.0159919347973558,0.00594753560016398,0.0104186902896244,0.00439218018291298,0.00247134502777473,-0.00578412332875236,0.0018869987749865,-0.00689182092499846,-0.0147510195102575,-0.002389125338649,0.03979341814021,0.0334994056540648,0.000411066238446218,-0.0106773672744226,0.00994423235644984,0.0184868338141435,0.0174546329293927,0.0157117486949176,0.000608149882724388,0.0242633828919274,0.013033413795771,0.0217736201029658,0.0276235660091132,0.0570673484384537,0.00360259000581803,0.0122330828475067,0.0169518160366197,-0.00231571605866975,-0.0147510195102575,0.00151353319752936,-0.00307001894060193,-0.00105468945800183,-0.0147510195102575,-0.000240422004953512,0.0039541889060006,-0.00486313195334908,-0.0147510195102575,-0.00978151869226383,-0.00172436187887983,-0.00192660618153375,0.00610242733508893,0.0316572708039992,0.0153697320990407,0.0259242192908506,0.0269605243764851,0.0147440939247245,0.0094584776319925,-0.00614530608888113,0.00948294928321158,0.0136555102011545,-0.00813930709688713,0.00320258219768143,0.0100391613763351,-0.00242175285014458,0.00193275998443589,0.000381797794186226,-0.0101223542448958,0.0370690904401444,-0.0118964776201017,0.00628697559295898,0.00951603072471404,-0.00850509319707631,-0.00300729743319913,-0.00156696873596801,0.00610698945260198,0.00237026484234954,-0.000163052933082792,-0.0147510195102575,0.0122863325418034,0.00867736495038495,0.0163590918599204,0.00421526958615558,0.00807180500895789,0.0191161422490054,0.00824950863163392,-0.001787565957218,-0.0103401494757945,0.00273847326425171,0.020075625100049,0.0150251941615982,0.0115588372408576,0.015463569118888,0.0034450972970345,0.0235899466432935,0.00603049074990999,0.0113549953503369,0.0226173387083609,0.0186713162913985,0.015496829399708,0.0692230581201298,0.00299085604413261,0.0184530420774487,0.022811350953735,0.0381479435543051,0.0386740550172358,0.046752694553501,0.0442770279180847,0.0466039555728214,0.0528642873120652,0.0421386525423988,0.0529447473295162,0.051518686088802,0.0464606388983025,-0.00798421478099979,0.00221582101946078,0.0080790974558024,0.00418008037091204,-0.000822673125620542,0.00346645325618996,0.00109722483323337,0.000691379313789459,-0.0147510195102575,0.0397000229501719,0.025017558286344,0.0754189348125865,0.043858383674838,0.0197498527735813,0.0270318766791576,0.0287130685795706,0.02194603141649,0.0123003434147705,0.0229996455266123,0.0487986325260799,0.0674067808416698,0.0670624290270397,0.0326748566516038,0.0519987456323429,0.0703847230403811,0.0579600232454255,0.0611544975265298,0.0493475054123666,0.047806179431677,0.0502315650995557,0.0687733248677395,0.0511715782007337,0.0570862270474031,0.05686143418231,0.038327647670149,0.0658901137148858,0.0413671209292449,0.0803151971839776,0.0707154078449218,0.0697850327870558,0.0588731065970032,0.0593997233098487,0.0657691196920423,0.0484586242428377,0.0515004453332353,0.0523384671736293,0.0407859690538489,0.0675936408747586,0.0328480777094325,0.0619634683701247,0.0583153181917895,0.0609807115937866,0.0568118799795699,0.0458780610404206,0.0880599738942739,0.0566187622837147,0.063022960621726,0.0069059305132351,-0.00453062807887811,0.00235116956359013
|gostat_on_MCL_coexpression=GO:0019198;transmembrane receptor protein phosphatase activity;0.0185175039719498;19273!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0185175039719498;19273!GO:0021879;forebrain neuron differentiation;0.0475499523893807;16875!GO:0007191;dopamine receptor, adenylate cyclase activating pathway;0.0475499523893807;14680!GO:0004727;prenylated protein tyrosine phosphatase activity;0.0475499523893807;19273!GO:0021872;generation of neurons in the forebrain;0.0475499523893807;16875!GO:0007190;adenylate cyclase activation;0.0475499523893807;14680!GO:0045762;positive regulation of adenylate cyclase activity;0.0475499523893807;14680!GO:0031281;positive regulation of cyclase activity;0.0475499523893807;14680!GO:0051349;positive regulation of lyase activity;0.0475499523893807;14680!GO:0045761;regulation of adenylate cyclase activity;0.0475499523893807;14680!GO:0031279;regulation of cyclase activity;0.0475499523893807;14680!GO:0007212;dopamine receptor signaling pathway;0.0475499523893807;14680!GO:0051339;regulation of lyase activity;0.0475499523893807;14680!GO:0007185;transmembrane receptor protein tyrosine phosphatase signaling pathway;0.0493029557375933;19273!
}}

Revision as of 11:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:44456621..44456634,+p@chr11:44456621..44456634
+
Mm9::chr11:44456648..44456656,+p@chr11:44456648..44456656
+
Mm9::chr12:107682982..107682991,-p@chr12:107682982..107682991
-
Mm9::chr13:98010402..98010420,+p@chr13:98010402..98010420
+
Mm9::chr13:98013895..98013931,+p@chr13:98013895..98013931
+
Mm9::chr13:98014013..98014020,+p@chr13:98014013..98014020
+
Mm9::chr17:43295228..43295255,-p1@E130008D07Rik
Mm9::chr17:85116028..85116057,-p@chr17:85116028..85116057
-
Mm9::chr18:67292732..67292740,+p@chr18:67292732..67292740
+
Mm9::chr18:67292751..67292763,+p@chr18:67292751..67292763
+
Mm9::chr1:178744297..178744320,-p3@Cep170
Mm9::chr2:116223084..116223093,-p@chr2:116223084..116223093
-
Mm9::chr2:32178964..32178975,-p@chr2:32178964..32178975
-
Mm9::chr2:69933028..69933041,+p@chr2:69933028..69933041
+
Mm9::chr3:153991607..153991627,-p2@Lhx8
Mm9::chr3:153993295..153993298,-p3@Lhx8
Mm9::chr4:131377546..131377578,-p3@Ptpru
Mm9::chr4:154597342..154597358,-p@chr4:154597342..154597358
-
Mm9::chr6:128363704..128363746,-p@chr6:128363704..128363746
-
Mm9::chr6:99154456..99154464,-p@chr6:99154456..99154464
-
Mm9::chr6:99154482..99154491,-p@chr6:99154482..99154491
-
Mm9::chr9:121905215..121905233,+p@chr9:121905215..121905233
+
Mm9::chr9:53783897..53783904,-p@chr9:53783897..53783904
-
Mm9::chr9:53783907..53783912,-p@chr9:53783907..53783912
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019198transmembrane receptor protein phosphatase activity0.0185175039719498
GO:0005001transmembrane receptor protein tyrosine phosphatase activity0.0185175039719498
GO:0021879forebrain neuron differentiation0.0475499523893807
GO:0007191dopamine receptor, adenylate cyclase activating pathway0.0475499523893807
GO:0004727prenylated protein tyrosine phosphatase activity0.0475499523893807
GO:0021872generation of neurons in the forebrain0.0475499523893807
GO:0007190adenylate cyclase activation0.0475499523893807
GO:0045762positive regulation of adenylate cyclase activity0.0475499523893807
GO:0031281positive regulation of cyclase activity0.0475499523893807
GO:0051349positive regulation of lyase activity0.0475499523893807
GO:0045761regulation of adenylate cyclase activity0.0475499523893807
GO:0031279regulation of cyclase activity0.0475499523893807
GO:0007212dopamine receptor signaling pathway0.0475499523893807
GO:0051339regulation of lyase activity0.0475499523893807
GO:0007185transmembrane receptor protein tyrosine phosphatase signaling pathway0.0493029557375933



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:334&oldid=2145848"