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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0007276;gamete generation;0.00176087567671179;17450,213236,227631!GO:0019953;sexual reproduction;0.00176087567671179;17450,213236,227631!GO:0000003;reproduction;0.00346714036832184;17450,213236,227631!GO:0016973;poly(A)+ mRNA export from nucleus;0.0164899966144239;83454!GO:0007283;spermatogenesis;0.0164899966144239;17450,227631!GO:0048232;male gamete generation;0.0164899966144239;17450,227631!GO:0006406;mRNA export from nucleus;0.0382687687244097;83454!GO:0006405;RNA export from nucleus;0.0397410998723541;83454!GO:0001541;ovarian follicle development;0.0397410998723541;227631!GO:0048477;oogenesis;0.0397410998723541;227631!GO:0051168;nuclear export;0.0397410998723541;83454!GO:0048869;cellular developmental process;0.0397410998723541;17450,213236,227631!GO:0030154;cell differentiation;0.0397410998723541;17450,213236,227631!GO:0007281;germ cell development;0.0397410998723541;213236!GO:0022601;menstrual cycle phase;0.0397410998723541;227631!GO:0003723;RNA binding;0.0397410998723541;83454,213236!GO:0022602;menstrual cycle process;0.0397410998723541;227631!GO:0003729;mRNA binding;0.0397410998723541;83454!GO:0008585;female gonad development;0.0397410998723541;227631!GO:0007292;female gamete generation;0.0397410998723541;227631!GO:0046545;development of primary female sexual characteristics;0.0397410998723541;227631!GO:0046660;female sex differentiation;0.0397410998723541;227631!GO:0042698;menstrual cycle;0.0412187783858621;227631!GO:0051028;mRNA transport;0.0412187783858621;83454!GO:0007275;multicellular organismal development;0.0412187783858621;17450,213236,227631!GO:0050658;RNA transport;0.0412187783858621;83454!GO:0051236;establishment of RNA localization;0.0412187783858621;83454!GO:0050657;nucleic acid transport;0.0412187783858621;83454!GO:0008406;gonad development;0.0412187783858621;227631!GO:0006403;RNA localization;0.0412187783858621;83454!GO:0048608;reproductive structure development;0.0414443362371201;227631!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0416551345554524;83454!GO:0045137;development of primary sexual characteristics;0.0425821034744584;227631!GO:0048609;reproductive process in a multicellular organism;0.049047802191363;227631!GO:0032504;multicellular organism reproduction;0.049047802191363;227631!GO:0007548;sex differentiation;0.049047802191363;227631!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0007276;gamete generation;0.00176087567671179;17450,213236,227631!GO:0019953;sexual reproduction;0.00176087567671179;17450,213236,227631!GO:0000003;reproduction;0.00346714036832184;17450,213236,227631!GO:0016973;poly(A)+ mRNA export from nucleus;0.0164899966144239;83454!GO:0007283;spermatogenesis;0.0164899966144239;17450,227631!GO:0048232;male gamete generation;0.0164899966144239;17450,227631!GO:0006406;mRNA export from nucleus;0.0382687687244097;83454!GO:0006405;RNA export from nucleus;0.0397410998723541;83454!GO:0001541;ovarian follicle development;0.0397410998723541;227631!GO:0048477;oogenesis;0.0397410998723541;227631!GO:0051168;nuclear export;0.0397410998723541;83454!GO:0048869;cellular developmental process;0.0397410998723541;17450,213236,227631!GO:0030154;cell differentiation;0.0397410998723541;17450,213236,227631!GO:0007281;germ cell development;0.0397410998723541;213236!GO:0022601;menstrual cycle phase;0.0397410998723541;227631!GO:0003723;RNA binding;0.0397410998723541;83454,213236!GO:0022602;menstrual cycle process;0.0397410998723541;227631!GO:0003729;mRNA binding;0.0397410998723541;83454!GO:0008585;female gonad development;0.0397410998723541;227631!GO:0007292;female gamete generation;0.0397410998723541;227631!GO:0046545;development of primary female sexual characteristics;0.0397410998723541;227631!GO:0046660;female sex differentiation;0.0397410998723541;227631!GO:0042698;menstrual cycle;0.0412187783858621;227631!GO:0051028;mRNA transport;0.0412187783858621;83454!GO:0007275;multicellular organismal development;0.0412187783858621;17450,213236,227631!GO:0050658;RNA transport;0.0412187783858621;83454!GO:0051236;establishment of RNA localization;0.0412187783858621;83454!GO:0050657;nucleic acid transport;0.0412187783858621;83454!GO:0008406;gonad development;0.0412187783858621;227631!GO:0006403;RNA localization;0.0412187783858621;83454!GO:0048608;reproductive structure development;0.0414443362371201;227631!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0416551345554524;83454!GO:0045137;development of primary sexual characteristics;0.0425821034744584;227631!GO:0048609;reproductive process in a multicellular organism;0.049047802191363;227631!GO:0032504;multicellular organism reproduction;0.049047802191363;227631!GO:0007548;sex differentiation;0.049047802191363;227631!
}}

Revision as of 11:11, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:23621952..23621962,+p@chr10:23621952..23621962
+
Mm9::chr10:35205159..35205169,-p@chr10:35205159..35205169
-
Mm9::chr16:48431394..48431436,+p1@Morc1
Mm9::chr17:13102737..13102743,-p3@Pnldc1
Mm9::chr18:36925872..36925891,-p1@Dnd1
Mm9::chr2:25702816..25702827,-p2@Sohlh1
Mm9::chr2:25702844..25702859,-p1@Sohlh1
Mm9::chr7:6615049..6615056,-p1@Zim2
Mm9::chr9:122656379..122656382,+p3@Gm9524
Mm9::chrX:131499234..131499265,-p1@Nxf2
Mm9::chrX:131499281..131499306,-p2@Nxf2
Mm9::chrX:53466080..53466092,-p1@Gm773


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007276gamete generation0.00176087567671179
GO:0019953sexual reproduction0.00176087567671179
GO:0000003reproduction0.00346714036832184
GO:0016973poly(A)+ mRNA export from nucleus0.0164899966144239
GO:0007283spermatogenesis0.0164899966144239
GO:0048232male gamete generation0.0164899966144239
GO:0006406mRNA export from nucleus0.0382687687244097
GO:0006405RNA export from nucleus0.0397410998723541
GO:0001541ovarian follicle development0.0397410998723541
GO:0048477oogenesis0.0397410998723541
GO:0051168nuclear export0.0397410998723541
GO:0048869cellular developmental process0.0397410998723541
GO:0030154cell differentiation0.0397410998723541
GO:0007281germ cell development0.0397410998723541
GO:0022601menstrual cycle phase0.0397410998723541
GO:0003723RNA binding0.0397410998723541
GO:0022602menstrual cycle process0.0397410998723541
GO:0003729mRNA binding0.0397410998723541
GO:0008585female gonad development0.0397410998723541
GO:0007292female gamete generation0.0397410998723541
GO:0046545development of primary female sexual characteristics0.0397410998723541
GO:0046660female sex differentiation0.0397410998723541
GO:0042698menstrual cycle0.0412187783858621
GO:0051028mRNA transport0.0412187783858621
GO:0007275multicellular organismal development0.0412187783858621
GO:0050658RNA transport0.0412187783858621
GO:0051236establishment of RNA localization0.0412187783858621
GO:0050657nucleic acid transport0.0412187783858621
GO:0008406gonad development0.0412187783858621
GO:0006403RNA localization0.0412187783858621
GO:0048608reproductive structure development0.0414443362371201
GO:0015931nucleobase, nucleoside, nucleotide and nucleic acid transport0.0416551345554524
GO:0045137development of primary sexual characteristics0.0425821034744584
GO:0048609reproductive process in a multicellular organism0.049047802191363
GO:0032504multicellular organism reproduction0.049047802191363
GO:0007548sex differentiation0.049047802191363



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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