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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0003682;chromatin binding;0.0100113843144172;13390,13392!GO:0048306;calcium-dependent protein binding;0.0377534594233227;54524!GO:0005667;transcription factor complex;0.0377534594233227;13390,13392!GO:0043565;sequence-specific DNA binding;0.0377534594233227;13390,13392!GO:0007340;acrosome reaction;0.0377534594233227;54524!GO:0003727;single-stranded RNA binding;0.0377534594233227;13392!GO:0044451;nucleoplasm part;0.0377534594233227;13390,13392!GO:0005654;nucleoplasm;0.0377534594233227;13390,13392!GO:0017156;calcium ion-dependent exocytosis;0.039472660718551;54524!GO:0031981;nuclear lumen;0.039472660718551;13390,13392!GO:0043524;negative regulation of neuron apoptosis;0.039472660718551;13390!GO:0031974;membrane-enclosed lumen;0.041487927027033;13390,13392!GO:0043233;organelle lumen;0.041487927027033;13390,13392!GO:0043523;regulation of neuron apoptosis;0.0432655166342465;13390!GO:0003700;transcription factor activity;0.0432655166342465;13390,13392!GO:0051402;neuron apoptosis;0.0447989412981176;13390!GO:0007338;single fertilization;0.0454849411957286;54524!GO:0009566;fertilization;0.0497183098655478;54524!GO:0044428;nuclear part;0.0497183098655478;13390,13392!GO:0008021;synaptic vesicle;0.0499450898651755;54524!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0003682;chromatin binding;0.0100113843144172;13390,13392!GO:0048306;calcium-dependent protein binding;0.0377534594233227;54524!GO:0005667;transcription factor complex;0.0377534594233227;13390,13392!GO:0043565;sequence-specific DNA binding;0.0377534594233227;13390,13392!GO:0007340;acrosome reaction;0.0377534594233227;54524!GO:0003727;single-stranded RNA binding;0.0377534594233227;13392!GO:0044451;nucleoplasm part;0.0377534594233227;13390,13392!GO:0005654;nucleoplasm;0.0377534594233227;13390,13392!GO:0017156;calcium ion-dependent exocytosis;0.039472660718551;54524!GO:0031981;nuclear lumen;0.039472660718551;13390,13392!GO:0043524;negative regulation of neuron apoptosis;0.039472660718551;13390!GO:0031974;membrane-enclosed lumen;0.041487927027033;13390,13392!GO:0043233;organelle lumen;0.041487927027033;13390,13392!GO:0043523;regulation of neuron apoptosis;0.0432655166342465;13390!GO:0003700;transcription factor activity;0.0432655166342465;13390,13392!GO:0051402;neuron apoptosis;0.0447989412981176;13390!GO:0007338;single fertilization;0.0454849411957286;54524!GO:0009566;fertilization;0.0497183098655478;54524!GO:0044428;nuclear part;0.0497183098655478;13390,13392!GO:0008021;synaptic vesicle;0.0499450898651755;54524!
}}

Revision as of 11:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:71367605..71367621,+p9@Dlx1
Mm9::chr2:71367646..71367658,+p11@Dlx1
Mm9::chr2:71367712..71367725,-p@chr2:71367712..71367725
-
Mm9::chr2:71367855..71367864,+p6@Dlx1
Mm9::chr2:71367871..71367898,+p1@Dlx1
Mm9::chr2:71384401..71384424,-p3@Dlx2
Mm9::chr2:71384425..71384456,-p4@Dlx2
Mm9::chr2:71384458..71384526,-p2@Dlx2
Mm9::chr3:103379198..103379209,+p2@Syt6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0003682chromatin binding0.0100113843144172
GO:0048306calcium-dependent protein binding0.0377534594233227
GO:0005667transcription factor complex0.0377534594233227
GO:0043565sequence-specific DNA binding0.0377534594233227
GO:0007340acrosome reaction0.0377534594233227
GO:0003727single-stranded RNA binding0.0377534594233227
GO:0044451nucleoplasm part0.0377534594233227
GO:0005654nucleoplasm0.0377534594233227
GO:0017156calcium ion-dependent exocytosis0.039472660718551
GO:0031981nuclear lumen0.039472660718551
GO:0043524negative regulation of neuron apoptosis0.039472660718551
GO:0031974membrane-enclosed lumen0.041487927027033
GO:0043233organelle lumen0.041487927027033
GO:0043523regulation of neuron apoptosis0.0432655166342465
GO:0003700transcription factor activity0.0432655166342465
GO:0051402neuron apoptosis0.0447989412981176
GO:0007338single fertilization0.0454849411957286
GO:0009566fertilization0.0497183098655478
GO:0044428nuclear part0.0497183098655478
GO:0008021synaptic vesicle0.0499450898651755



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}