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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0016024;CDP-diacylglycerol biosynthetic process;0.00361584397085411;74596!GO:0046341;CDP-diacylglycerol metabolic process;0.00361584397085411;74596!GO:0004605;phosphatidate cytidylyltransferase activity;0.00482099322332118;74596!GO:0006651;diacylglycerol biosynthetic process;0.0064269343952206;74596!GO:0046460;neutral lipid biosynthetic process;0.0064269343952206;74596!GO:0046463;acylglycerol biosynthetic process;0.0064269343952206;74596!GO:0046339;diacylglycerol metabolic process;0.0064269343952206;74596!GO:0046504;glycerol ether biosynthetic process;0.0064269343952206;74596!GO:0045017;glycerolipid biosynthetic process;0.0064269343952206;74596!GO:0001533;cornified envelope;0.0121947814690103;16447!GO:0030216;keratinocyte differentiation;0.0121947814690103;16447!GO:0006639;acylglycerol metabolic process;0.0121947814690103;74596!GO:0046486;glycerolipid metabolic process;0.0121947814690103;74596!GO:0006638;neutral lipid metabolic process;0.0121947814690103;74596!GO:0006662;glycerol ether metabolic process;0.0121947814690103;74596!GO:0031424;keratinization;0.0121947814690103;16447!GO:0009913;epidermal cell differentiation;0.0148749018209019;16447!GO:0048730;epidermis morphogenesis;0.0196603756735073;16447!GO:0008654;phospholipid biosynthetic process;0.022041208409552;74596!GO:0046467;membrane lipid biosynthetic process;0.025775100156972;74596!GO:0048729;tissue morphogenesis;0.025775100156972;16447!GO:0008544;epidermis development;0.0314743322299509;16447!GO:0007398;ectoderm development;0.0316695480076329;16447!GO:0016779;nucleotidyltransferase activity;0.0318480830814946;74596!GO:0006644;phospholipid metabolic process;0.0334493223003014;74596!GO:0006643;membrane lipid metabolic process;0.0418268369940089;74596!}}
{{MCL_coexpression_mm9
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}}

Revision as of 11:35, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:92377648..92377664,-p1@Ivl
Mm9::chr3:92377667..92377678,-p2@Ivl
Mm9::chr3:92377789..92377793,-p3@Ivl
Mm9::chr5:102193870..102193883,+p7@Cds1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0016024CDP-diacylglycerol biosynthetic process0.00361584397085411
GO:0046341CDP-diacylglycerol metabolic process0.00361584397085411
GO:0004605phosphatidate cytidylyltransferase activity0.00482099322332118
GO:0006651diacylglycerol biosynthetic process0.0064269343952206
GO:0046460neutral lipid biosynthetic process0.0064269343952206
GO:0046463acylglycerol biosynthetic process0.0064269343952206
GO:0046339diacylglycerol metabolic process0.0064269343952206
GO:0046504glycerol ether biosynthetic process0.0064269343952206
GO:0045017glycerolipid biosynthetic process0.0064269343952206
GO:0001533cornified envelope0.0121947814690103
GO:0030216keratinocyte differentiation0.0121947814690103
GO:0006639acylglycerol metabolic process0.0121947814690103
GO:0046486glycerolipid metabolic process0.0121947814690103
GO:0006638neutral lipid metabolic process0.0121947814690103
GO:0006662glycerol ether metabolic process0.0121947814690103
GO:0031424keratinization0.0121947814690103
GO:0009913epidermal cell differentiation0.0148749018209019
GO:0048730epidermis morphogenesis0.0196603756735073
GO:0008654phospholipid biosynthetic process0.022041208409552
GO:0046467membrane lipid biosynthetic process0.025775100156972
GO:0048729tissue morphogenesis0.025775100156972
GO:0008544epidermis development0.0314743322299509
GO:0007398ectoderm development0.0316695480076329
GO:0016779nucleotidyltransferase activity0.0318480830814946
GO:0006644phospholipid metabolic process0.0334493223003014
GO:0006643membrane lipid metabolic process0.0418268369940089



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}