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MCL coexpression mm9:123: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.676197442448092,0.326336155202789,0.286373789385571,0.180026585552633,0.120273978885459,0.743208445173391,0.626473943314189,0.224354618892712,0.319682425198041,0.00920808242120485,0.66183950543512,0.703752480064225,0.631649225597708,0.0682179984609265,0.24154041741535,0.230425255986107,0.120568945209029,0.0896964873768703,0,0,0,0,0,0,0,0,0,0,0,0,0.0705246354030087,0,0.0114511952078789,0,0.122739810118608,0.113948001716977,0,0,0,0,0,0,0,0,0,0.588353690123348,0.654506276222684,0.747072035781878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.12691338311418,0.892300045221141,0.0601091194109999,0,0,0,0,0,0,0,0.110319863569628,0.275221618407307,0.0206293986623616,0.202424445809466,0.171689969376673,0,0,0,0.098801861608942,0.219558638183184,0.0160202663767192,0.149100543393976,0,0,0,0,0,0,0,0,0.232855165857502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11042622592431,0.091924708940908,0,0,0,0,0,0,0,0,0,0,0.00855370146362774,0.0299486230685726,0.0118498293277795,0.0570339518842597,0.0359556534498433,0,0,0.0729710001403895,0,0,0,0,0,0,0,0,0,0,0.016107940440923,0.0470646334238041,0,0,0.0788396745663492,0,0,0,0,0,0,0.0266298923127834,0,0,0,0,0,0,0,0,0.014318222857068,0.0466740831510731,0.069880832901304,0.121976689400977,0.0648533722810609,0,0.0262968650922385,0.0582858910562631,0,0,0,0.256697604770812,0,0,0,0,0.0894450965001262,0,0.000356554192313285,0.119015009568782,0.106234718070893,0.134097488483017,0.218916923110154,0.228076808807707,0.156533152932051,0,0,0.0425195357226024,0.105514601032225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0512724912634332,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.0358121611048443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0662835200988411,0,0.0254340553719351,0,0,0.0741850843337321,0,0.404463883488154,0.0814866010703366,0.136843881272943,0.256619197097484,0.410114803035069,0.447868707431435,0.276129141651585,0.311423467967058,0.292810639888697,0,0,0,0,0,0,0,0.026342145063287,0,0.00960298546210879,0.119257322560712,0,0,0,0,0,0,0,0,0,0,0,0.740918208924902,0.0812205386778996,0.229168073342201,0.361578305305092,0.522098100325902,0.577668579950647,0.633968656081604,0.65672599179893,0.739351138989726,0.732916634206483,0.727099679830805,0.726712830720732,0.788567064052734,0.877613264106567,0,0,0,0,0.0422757284966759,0.0742271122549091,0.0711054475139249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0355337817745506,0.0269518943326477,0.0242538736058389,0,0,0,0,0,0,0,0,0.0374019203991287,0.0390607415003592,0.0214531140241852,0,0,0.01494462066803,0,0,0.0150974615208289,0,0.00158917001630979,0,0,0.00609300786164169,0.0412666443109115,0,0.0369307205900287,0.0873334202070767
|gostat_on_MCL_coexpression=GO:0003676;nucleic acid binding;6.04249900836944e-05;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,213988,16764,59024,20185,76071,56758,71148,11920,22368!GO:0016070;RNA metabolic process;0.000144609430801015;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,22368!GO:0043283;biopolymer metabolic process;0.000144609430801015;209225,18021,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,101540,22368,11920!GO:0050789;regulation of biological process;0.000144609430801015;209225,18021,19712,18613,20742,22720,16818,240754,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368,11920!GO:0043170;macromolecule metabolic process;0.000147915531054353;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,11771,59024,20185,56758,71148,101540,108723,22368,11920!GO:0019222;regulation of metabolic process;0.000214075200626794;209225,18021,19712,20742,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368!GO:0050794;regulation of cellular process;0.000319364604303831;209225,18021,19712,18613,20742,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,11920,22368!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000418549991844582;209225,18021,12763,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,11920,22368!GO:0031323;regulation of cellular metabolic process;0.00044431535329671;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368!GO:0003677;DNA binding;0.00044431535329671;209225,18021,59024,16764,20185,19712,71148,23871,13714,22368,17863,11920,16842,12193,22780!GO:0065007;biological regulation;0.000549174522709008;209225,18021,19712,18613,20742,22720,16818,240754,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368,11920!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000564970487741933;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,12193,22780!GO:0005634;nucleus;0.000740222579883123;209225,18021,19712,20742,22720,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,59024,20185,56758,71148,71175,11920!GO:0010468;regulation of gene expression;0.000844361037870367;209225,18021,59024,16764,20185,19712,71148,22720,108723,23871,13714,22368,17863,16842,22780!GO:0006355;regulation of transcription, DNA-dependent;0.00107438648694831;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0006351;transcription, DNA-dependent;0.00111405541609713;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0032774;RNA biosynthetic process;0.00111405541609713;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0010467;gene expression;0.00120754781530943;209225,18021,19712,22720,23871,13714,17863,16842,22780,16764,59024,20185,56758,71148,108723,22368!GO:0045449;regulation of transcription;0.00135665362047548;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0044238;primary metabolic process;0.00152869350552634;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,11771,59024,20185,56758,71148,101540,108723,22368,11920!GO:0006350;transcription;0.00176016174777587;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0003700;transcription factor activity;0.00185708016705504;18021,16764,20185,23871,13714,22368,16842,17863,22780!GO:0044237;cellular metabolic process;0.00552146585177274;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,59024,20185,56758,71148,101540,108723,22368,11920!GO:0050851;antigen receptor-mediated signaling pathway;0.0414713688806204;16818,240754!GO:0050776;regulation of immune response;0.0449529524925541;16818,240754,108723!GO:0002682;regulation of immune system process;0.0449529524925541;16818,240754,108723!GO:0021542;dentate gyrus development;0.0449529524925541;16842!GO:0030338;CMP-N-acetylneuraminate monooxygenase activity;0.0449529524925541;12763!GO:0005521;lamin binding;0.0449529524925541;208263!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0449529524925541;16818,240754!GO:0001756;somitogenesis;0.0449529524925541;16842,11920!GO:0048518;positive regulation of biological process;0.0449529524925541;59024,16842,11920,16818,240754,108723,23871!GO:0043231;intracellular membrane-bound organelle;0.0449529524925541;209225,18021,12763,19712,20742,22720,14423,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,11771,59024,20185,56758,71148,71175,11920!GO:0043227;membrane-bound organelle;0.0449529524925541;209225,18021,12763,19712,20742,22720,14423,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,11771,59024,20185,56758,71148,71175,11920!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0449904172636834;16818,240754!GO:0002757;immune response-activating signal transduction;0.0489777847153195;16818,240754!
|gostat_on_MCL_coexpression=GO:0003676;nucleic acid binding;6.04249900836944e-05;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,213988,16764,59024,20185,76071,56758,71148,11920,22368!GO:0016070;RNA metabolic process;0.000144609430801015;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,22368!GO:0043283;biopolymer metabolic process;0.000144609430801015;209225,18021,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,101540,22368,11920!GO:0050789;regulation of biological process;0.000144609430801015;209225,18021,19712,18613,20742,22720,16818,240754,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368,11920!GO:0043170;macromolecule metabolic process;0.000147915531054353;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,11771,59024,20185,56758,71148,101540,108723,22368,11920!GO:0019222;regulation of metabolic process;0.000214075200626794;209225,18021,19712,20742,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368!GO:0050794;regulation of cellular process;0.000319364604303831;209225,18021,19712,18613,20742,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,11920,22368!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000418549991844582;209225,18021,12763,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,56758,71148,11920,22368!GO:0031323;regulation of cellular metabolic process;0.00044431535329671;209225,18021,19712,22720,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368!GO:0003677;DNA binding;0.00044431535329671;209225,18021,59024,16764,20185,19712,71148,23871,13714,22368,17863,11920,16842,12193,22780!GO:0065007;biological regulation;0.000549174522709008;209225,18021,19712,18613,20742,22720,16818,240754,23871,13714,17863,16842,12193,22780,16764,59024,20185,71148,108723,22368,11920!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000564970487741933;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,12193,22780!GO:0005634;nucleus;0.000740222579883123;209225,18021,19712,20742,22720,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,59024,20185,56758,71148,71175,11920!GO:0010468;regulation of gene expression;0.000844361037870367;209225,18021,59024,16764,20185,19712,71148,22720,108723,23871,13714,22368,17863,16842,22780!GO:0006355;regulation of transcription, DNA-dependent;0.00107438648694831;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0006351;transcription, DNA-dependent;0.00111405541609713;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0032774;RNA biosynthetic process;0.00111405541609713;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0010467;gene expression;0.00120754781530943;209225,18021,19712,22720,23871,13714,17863,16842,22780,16764,59024,20185,56758,71148,108723,22368!GO:0045449;regulation of transcription;0.00135665362047548;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0044238;primary metabolic process;0.00152869350552634;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,11771,59024,20185,56758,71148,101540,108723,22368,11920!GO:0006350;transcription;0.00176016174777587;209225,18021,59024,16764,20185,19712,71148,22720,23871,13714,22368,16842,17863,22780!GO:0003700;transcription factor activity;0.00185708016705504;18021,16764,20185,23871,13714,22368,16842,17863,22780!GO:0044237;cellular metabolic process;0.00552146585177274;209225,18021,12763,19712,20742,22720,14423,16818,59090,23871,18749,13714,17863,16842,12193,22780,70387,16764,59024,20185,56758,71148,101540,108723,22368,11920!GO:0050851;antigen receptor-mediated signaling pathway;0.0414713688806204;16818,240754!GO:0050776;regulation of immune response;0.0449529524925541;16818,240754,108723!GO:0002682;regulation of immune system process;0.0449529524925541;16818,240754,108723!GO:0021542;dentate gyrus development;0.0449529524925541;16842!GO:0030338;CMP-N-acetylneuraminate monooxygenase activity;0.0449529524925541;12763!GO:0005521;lamin binding;0.0449529524925541;208263!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0449529524925541;16818,240754!GO:0001756;somitogenesis;0.0449529524925541;16842,11920!GO:0048518;positive regulation of biological process;0.0449529524925541;59024,16842,11920,16818,240754,108723,23871!GO:0043231;intracellular membrane-bound organelle;0.0449529524925541;209225,18021,12763,19712,20742,22720,14423,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,11771,59024,20185,56758,71148,71175,11920!GO:0043227;membrane-bound organelle;0.0449529524925541;209225,18021,12763,19712,20742,22720,14423,59090,23871,18749,13714,17863,16842,12193,22780,208263,16764,11771,59024,20185,56758,71148,71175,11920!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0449904172636834;16818,240754!GO:0002757;immune response-activating signal transduction;0.0489777847153195;16818,240754!
}}
}}

Revision as of 12:37, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:128184776..128184800,-p@chr10:128184776..128184800
-
Mm9::chr10:128258801..128258829,+p2@Sarnp
Mm9::chr10:19987074..19987116,+p@chr10:19987074..19987116
+
Mm9::chr10:20881210..20881226,-p8@Myb
Mm9::chr10:41472017..41472073,-p@chr10:41472017..41472073
-
Mm9::chr10:41990727..41990747,-p@chr10:41990727..41990747
-
Mm9::chr10:79613557..79613570,+p10@Midn
Mm9::chr11:106249380..106249419,-p2@Icam2
Mm9::chr11:106249420..106249431,-p3@Icam2
Mm9::chr11:106611786..106611800,-p4@Pecam1
Mm9::chr11:115324117..115324139,-p@chr11:115324117..115324139
-
Mm9::chr11:49016787..49016800,+p3@Zfp62
Mm9::chr11:62272010..62272050,-p2@Ncor1
Mm9::chr11:62387979..62388024,+p2@Trpv2
Mm9::chr11:62388025..62388054,+p5@Trpv2
Mm9::chr11:62388075..62388086,+p7@Trpv2
Mm9::chr11:6488230..6488234,+p@chr11:6488230..6488234
+
Mm9::chr11:82880750..82880793,-p@chr11:82880750..82880793
-
Mm9::chr11:98407142..98407159,-p5@Ikzf3
Mm9::chr11:98407164..98407177,-p8@Ikzf3
Mm9::chr11:98407210..98407221,-p7@Ikzf3
Mm9::chr12:114664203..114664241,-p@chr12:114664203..114664241
-
Mm9::chr12:70576554..70576575,-p2@5830428M24Rik
Mm9::chr12:80081745..80081804,-p2@Tmem229b
Mm9::chr13:20277272..20277279,+p17@Elmo1
Mm9::chr13:24508497..24508537,+p5@Cmah
Mm9::chr13:24509523..24509546,+p@chr13:24509523..24509546
+
Mm9::chr13:35281129..35281136,+p@chr13:35281129..35281136
+
Mm9::chr14:79915425..79915501,+p1@Elf1
Mm9::chr15:59451643..59451659,+p@chr15:59451643..59451659
+
Mm9::chr15:80402967..80402990,+p2@Grap2
Mm9::chr15:80541722..80541770,+p1@Tnrc6b
Mm9::chr15:8394164..8394209,-p3@Nipbl
Mm9::chr17:71824625..71824680,-p1@Smchd1
Mm9::chr17:84580073..84580090,-p@chr17:84580073..84580090
-
Mm9::chr17:84586009..84586031,-p@chr17:84586009..84586031
-
Mm9::chr18:24364108..24364133,+p11@Galnt1
Mm9::chr18:34381287..34381313,-p1@Gm10548
Mm9::chr18:34937244..34937300,+p@chr18:34937244..34937300
+
Mm9::chr18:78338818..78338829,-p3@Slc14a1
Mm9::chr18:78338876..78338893,-p2@Slc14a1
Mm9::chr18:78338906..78338915,-p4@Slc14a1
Mm9::chr19:25127044..25127101,+p1@Dock8
Mm9::chr19:8894247..8894280,-p5@Ttc9c
Mm9::chr1:133904862..133904893,+p6@Elk4
Mm9::chr1:133904901..133904934,+p3@Elk4
Mm9::chr1:135586667..135586674,-p6@Lax1
Mm9::chr1:157883011..157883020,-p11@Tor1aip1
Mm9::chr1:173847569..173847603,+p2@Slamf6
Mm9::chr1:38721779..38721790,-p6@Aff3
Mm9::chr1:38721792..38721845,-p1@Aff3
Mm9::chr1:46951476..46951503,+p@chr1:46951476..46951503
+
Mm9::chr1:88256128..88256165,+p1@C130036L24Rik
Mm9::chr2:121332451..121332469,+p2@Wdr76
Mm9::chr2:44166131..44166132,+p@chr2:44166131..44166132
+
Mm9::chr2:6642696..6642730,-p6@Celf2
Mm9::chr3:103190802..103190814,+p@chr3:103190802..103190814
+
Mm9::chr3:130814435..130814449,+p@chr3:130814435..130814449
+
Mm9::chr3:146444315..146444395,-p1@Prkacb
Mm9::chr3:152591853..152591864,+p@chr3:152591853..152591864
+
Mm9::chr3:152593008..152593012,+p@chr3:152593008..152593012
+
Mm9::chr3:60276744..60276759,+p7@Mbnl1
Mm9::chr4:102792072..102792091,+p5@Mier1
Mm9::chr4:123250215..123250231,-p@chr4:123250215..123250231
-
Mm9::chr4:129236052..129236065,-p10@Lck
Mm9::chr4:137439830..137439880,-p1@ENSMUST00000155349
p1@ENSMUST00000156022
Mm9::chr5:105924474..105924494,+p@chr5:105924474..105924494
+
Mm9::chr5:117959951..117959963,+p@chr5:117959951..117959963
+
Mm9::chr5:141476588..141476603,-p2@Card11
Mm9::chr5:37438659..37438696,+p2@Jakmip1
Mm9::chr5:66254802..66254889,+p1@Rhoh
Mm9::chr5:77695390..77695414,+p2@Rest
Mm9::chr5:96593138..96593161,-p5@Cnot6l
Mm9::chr5:96593166..96593220,-p2@Cnot6l
Mm9::chr6:117850421..117850435,+p15@Hnrnpf
Mm9::chr6:47586869..47586882,-p@chr6:47586869..47586882
-
Mm9::chr6:48689458..48689462,-p@chr6:48689458..48689462
-
Mm9::chr6:57531054..57531109,+p1@Herc6
Mm9::chr6:57531119..57531132,+p4@Herc6
Mm9::chr6:87482995..87483032,-p4@Arhgap25
Mm9::chr7:142843956..142843985,-p1@5830432E09Rik
Mm9::chr7:148282731..148282745,-p@chr7:148282731..148282745
-
Mm9::chr7:150813953..150813968,+p1@uc009kpq.1
p1@uc009kpr.1
Mm9::chr7:17428319..17428365,+p2@Prkd2
Mm9::chr7:52156943..52156963,-p5@Ap2a1
Mm9::chr7:52997400..52997421,+p@chr7:52997400..52997421
+
Mm9::chr7:71144109..71144114,-p@chr7:71144109..71144114
-
Mm9::chr7:75420856..75420911,+p1@ENSMUST00000153805
Mm9::chr7:87171047..87171078,+p1@Zfp710
Mm9::chr8:108583550..108583595,+p2@Nfatc3
Mm9::chr8:74126069..74126107,+p2@Fam129c
Mm9::chr8:74247186..74247197,-p4@Fcho1
Mm9::chr9:21156409..21156413,+p@chr9:21156409..21156413
+
Mm9::chr9:21936079..21936109,-p@chr9:21936079..21936109
-
Mm9::chr9:32503590..32503680,+p1@Ets1
Mm9::chr9:53344724..53344798,-p1@Atm
Mm9::chrX:130697516..130697537,-p@chrX:130697516..130697537
-
Mm9::chrX:98469445..98469487,+p2@Med12


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003676nucleic acid binding6.04249900836944e-05
GO:0016070RNA metabolic process0.000144609430801015
GO:0043283biopolymer metabolic process0.000144609430801015
GO:0050789regulation of biological process0.000144609430801015
GO:0043170macromolecule metabolic process0.000147915531054353
GO:0019222regulation of metabolic process0.000214075200626794
GO:0050794regulation of cellular process0.000319364604303831
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.000418549991844582
GO:0031323regulation of cellular metabolic process0.00044431535329671
GO:0003677DNA binding0.00044431535329671
GO:0065007biological regulation0.000549174522709008
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.000564970487741933
GO:0005634nucleus0.000740222579883123
GO:0010468regulation of gene expression0.000844361037870367
GO:0006355regulation of transcription, DNA-dependent0.00107438648694831
GO:0006351transcription, DNA-dependent0.00111405541609713
GO:0032774RNA biosynthetic process0.00111405541609713
GO:0010467gene expression0.00120754781530943
GO:0045449regulation of transcription0.00135665362047548
GO:0044238primary metabolic process0.00152869350552634
GO:0006350transcription0.00176016174777587
GO:0003700transcription factor activity0.00185708016705504
GO:0044237cellular metabolic process0.00552146585177274
GO:0050851antigen receptor-mediated signaling pathway0.0414713688806204
GO:0050776regulation of immune response0.0449529524925541
GO:0002682regulation of immune system process0.0449529524925541
GO:0021542dentate gyrus development0.0449529524925541
GO:0030338CMP-N-acetylneuraminate monooxygenase activity0.0449529524925541
GO:0005521lamin binding0.0449529524925541
GO:0002429immune response-activating cell surface receptor signaling pathway0.0449529524925541
GO:0001756somitogenesis0.0449529524925541
GO:0048518positive regulation of biological process0.0449529524925541
GO:0043231intracellular membrane-bound organelle0.0449529524925541
GO:0043227membrane-bound organelle0.0449529524925541
GO:0002768immune response-regulating cell surface receptor signaling pathway0.0449904172636834
GO:0002757immune response-activating signal transduction0.0489777847153195



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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