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MCL coexpression mm9:202: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.396628864279954,0.194002013165964,0.0958936569839081,0.0971228831456606,0.0166660626832929,0.572780051507714,0.371890705403714,0.33491437052662,0.364340006752633,0.109725296466512,0.928101960618281,0.98061735312598,0.862082539104049,0.0471312085913994,0.235602369102035,0.182528654974432,0.139764765787983,0.110512010998148,0,0,0,0,0,0,0,0,0,0,0,0,0.0126304945077509,0,0.0545668100355404,0,0,0,0,0,0,0,0,0,0,0,0,0.755593580215933,0.442375779068831,0.427480393614124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0992532958427964,0,0,0,0,0,0,0,0,0,0,0.0892038667640344,0.780171789337899,0.0601091194109999,0,0,0,0,0,0,0,0.110319863569628,0.275221618407307,0.015896633392883,0.243660087152483,0.253794853842212,0,0,0,0.098801861608942,0.10515590754785,0,0.0554710300894365,0,0,0,0,0,0,0,0,0.309200623357358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480355592017329,0.0338533374824575,0.0421631331519186,0.0861996515928926,0.0546921007390138,0,0,0.123988367667141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0388426627319743,0.0756406106852262,0.123274913404847,0.0185076008202981,0,0,0.100567735666709,0,0,0,0.243413578396129,0,0,0,0,0.0672592169170953,0,0,0.119015009568782,0.086880916817156,0.120215008744062,0.253189353955851,0.211788284589693,0.198271062479628,0,0,0.0168395633881153,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0101855461157439,0,0,0.0604933221271427,0,0,0,0,0,0,0,0,0,0.0456589572862816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0662835200988411,0,0,0,0,0,0,0.496199028230267,0,0.105316759366405,0.266056621004775,0.518511932519355,0.516902978057154,0.127090816446242,0.108692518368781,0.11539374162853,0,0,0,0,0,0,0,0,0,0.0529304404135566,0.200272365255777,0,0,0,0,0,0,0,0,0,0,0,0.64981692179574,0.0772670484250423,0.116651858992906,0.30002156359294,0.415823731210299,0.502330543397409,0.542944123092728,0.55189986975424,0.595570909496961,0.599961677708378,0.657328107342051,0.649878161813495,0.70661332528196,0.710432739243564,0,0,0,0,0.0767094571656325,0.0116452857733408,0.0442121668859492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.036966734040818,0.0269518943326477,0.0160221455928587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0058913077323347,0,0,0,0,0,0,0,0.0277080303161244,0.0905641158318875
|gostat_on_MCL_coexpression=GO:0032944;regulation of mononuclear cell proliferation;0.00475871526897105;57916,108723,93675!GO:0050670;regulation of lymphocyte proliferation;0.00475871526897105;57916,108723,93675!GO:0032943;mononuclear cell proliferation;0.00555133419886413;57916,108723,93675!GO:0046651;lymphocyte proliferation;0.00555133419886413;57916,108723,93675!GO:0045076;regulation of interleukin-2 biosynthetic process;0.00555133419886413;108723,93675!GO:0051249;regulation of lymphocyte activation;0.00555133419886413;57916,108723,93675!GO:0050865;regulation of cell activation;0.00555133419886413;57916,108723,93675!GO:0042094;interleukin-2 biosynthetic process;0.00555133419886413;108723,93675!GO:0032623;interleukin-2 production;0.0056357446767541;108723,93675!GO:0030041;actin filament polymerization;0.0057446821543281;211401,93675!GO:0030888;regulation of B cell proliferation;0.00804288610178782;57916,108723!GO:0042100;B cell proliferation;0.0122743599463278;57916,108723!GO:0030036;actin cytoskeleton organization and biogenesis;0.0173835408549393;211401,14248,93675!GO:0030029;actin filament-based process;0.0185098557713758;211401,14248,93675!GO:0050864;regulation of B cell activation;0.0185098557713758;57916,108723!GO:0051258;protein polymerization;0.0186270750013696;211401,93675!GO:0008154;actin polymerization and/or depolymerization;0.0186270750013696;211401,93675!GO:0042129;regulation of T cell proliferation;0.0186270750013696;108723,93675!GO:0046649;lymphocyte activation;0.0186270750013696;57916,108723,93675!GO:0045610;regulation of hemocyte differentiation;0.0186270750013696;26411!GO:0042386;hemocyte differentiation;0.0186270750013696;26411!GO:0004633;phosphopantothenoylcysteine decarboxylase activity;0.0186270750013696;66812!GO:0042035;regulation of cytokine biosynthetic process;0.0218420849105439;108723,93675!GO:0045321;leukocyte activation;0.0218420849105439;57916,108723,93675!GO:0042098;T cell proliferation;0.0244722713607449;108723,93675!GO:0001775;cell activation;0.0246598869635554;57916,108723,93675!GO:0042089;cytokine biosynthetic process;0.0264246680723444;108723,93675!GO:0042107;cytokine metabolic process;0.0264246680723444;108723,93675!GO:0050863;regulation of T cell activation;0.0264246680723444;108723,93675!GO:0004144;diacylglycerol O-acyltransferase activity;0.0264246680723444;68393!GO:0051014;actin filament severing;0.0264246680723444;14248!GO:0051239;regulation of multicellular organismal process;0.0384332951015432;57916,108723,93675!GO:0030695;GTPase regulator activity;0.0424162388366757;108995,26411,76088!GO:0042113;B cell activation;0.0424162388366757;57916,108723!GO:0003846;2-acylglycerol O-acyltransferase activity;0.0454617984365382;68393!GO:0006651;diacylglycerol biosynthetic process;0.0454617984365382;68393!GO:0042127;regulation of cell proliferation;0.0480240436370861;57916,108723,93675!
|gostat_on_MCL_coexpression=GO:0032944;regulation of mononuclear cell proliferation;0.00475871526897105;57916,108723,93675!GO:0050670;regulation of lymphocyte proliferation;0.00475871526897105;57916,108723,93675!GO:0032943;mononuclear cell proliferation;0.00555133419886413;57916,108723,93675!GO:0046651;lymphocyte proliferation;0.00555133419886413;57916,108723,93675!GO:0045076;regulation of interleukin-2 biosynthetic process;0.00555133419886413;108723,93675!GO:0051249;regulation of lymphocyte activation;0.00555133419886413;57916,108723,93675!GO:0050865;regulation of cell activation;0.00555133419886413;57916,108723,93675!GO:0042094;interleukin-2 biosynthetic process;0.00555133419886413;108723,93675!GO:0032623;interleukin-2 production;0.0056357446767541;108723,93675!GO:0030041;actin filament polymerization;0.0057446821543281;211401,93675!GO:0030888;regulation of B cell proliferation;0.00804288610178782;57916,108723!GO:0042100;B cell proliferation;0.0122743599463278;57916,108723!GO:0030036;actin cytoskeleton organization and biogenesis;0.0173835408549393;211401,14248,93675!GO:0030029;actin filament-based process;0.0185098557713758;211401,14248,93675!GO:0050864;regulation of B cell activation;0.0185098557713758;57916,108723!GO:0051258;protein polymerization;0.0186270750013696;211401,93675!GO:0008154;actin polymerization and/or depolymerization;0.0186270750013696;211401,93675!GO:0042129;regulation of T cell proliferation;0.0186270750013696;108723,93675!GO:0046649;lymphocyte activation;0.0186270750013696;57916,108723,93675!GO:0045610;regulation of hemocyte differentiation;0.0186270750013696;26411!GO:0042386;hemocyte differentiation;0.0186270750013696;26411!GO:0004633;phosphopantothenoylcysteine decarboxylase activity;0.0186270750013696;66812!GO:0042035;regulation of cytokine biosynthetic process;0.0218420849105439;108723,93675!GO:0045321;leukocyte activation;0.0218420849105439;57916,108723,93675!GO:0042098;T cell proliferation;0.0244722713607449;108723,93675!GO:0001775;cell activation;0.0246598869635554;57916,108723,93675!GO:0042089;cytokine biosynthetic process;0.0264246680723444;108723,93675!GO:0042107;cytokine metabolic process;0.0264246680723444;108723,93675!GO:0050863;regulation of T cell activation;0.0264246680723444;108723,93675!GO:0004144;diacylglycerol O-acyltransferase activity;0.0264246680723444;68393!GO:0051014;actin filament severing;0.0264246680723444;14248!GO:0051239;regulation of multicellular organismal process;0.0384332951015432;57916,108723,93675!GO:0030695;GTPase regulator activity;0.0424162388366757;108995,26411,76088!GO:0042113;B cell activation;0.0424162388366757;57916,108723!GO:0003846;2-acylglycerol O-acyltransferase activity;0.0454617984365382;68393!GO:0006651;diacylglycerol biosynthetic process;0.0454617984365382;68393!GO:0042127;regulation of cell proliferation;0.0480240436370861;57916,108723,93675!
}}
}}

Revision as of 12:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110594409..110594448,-p@chr10:110594409..110594448
-
Mm9::chr11:11457391..11457401,+p2@ENSMUST00000146304
p2@uc007iag.1
Mm9::chr11:11457404..11457434,+p1@ENSMUST00000146304
p1@uc007iag.1
Mm9::chr11:49060964..49061014,+p5@Mgat1
Mm9::chr11:60955959..60955973,+p2@Tnfrsf13b
Mm9::chr11:98407234..98407259,-p2@Ikzf3
Mm9::chr11:98407264..98407295,-p1@Ikzf3
Mm9::chr11:98407305..98407321,-p6@Ikzf3
Mm9::chr11:98407340..98407359,-p4@Ikzf3
Mm9::chr11:98407370..98407395,-p3@Ikzf3
Mm9::chr11:98407512..98407517,-p13@Ikzf3
Mm9::chr12:100801772..100801861,-p1@Foxn3
Mm9::chr12:114660946..114660955,-p1@ENSMUST00000103426
Mm9::chr13:24821510..24821514,+p@chr13:24821510..24821514
+
Mm9::chr15:58913850..58913878,-p5@Mtss1
Mm9::chr15:74785926..74785937,-p@chr15:74785926..74785937
-
Mm9::chr15:74785945..74785971,-p@chr15:74785945..74785971
-
Mm9::chr15:74787899..74787904,+p@chr15:74787899..74787904
+
Mm9::chr15:74788002..74788006,+p@chr15:74788002..74788006
+
Mm9::chr17:50233579..50233599,-p3@Rftn1
Mm9::chr17:84177324..84177329,-p@chr17:84177324..84177329
-
Mm9::chr18:39678978..39678987,-p@chr18:39678978..39678987
-
Mm9::chr18:75438430..75438451,-p@chr18:75438430..75438451
-
Mm9::chr19:25126919..25126938,+p3@Dock8
Mm9::chr19:4190959..4190976,-p3@Tbc1d10c
Mm9::chr19:4190985..4191029,-p2@Tbc1d10c
Mm9::chr19:45547285..45547303,+p@chr19:45547285..45547303
+
Mm9::chr1:21315817..21315821,-p@chr1:21315817..21315821
-
Mm9::chr1:87627728..87627734,-p@chr1:87627728..87627734
-
Mm9::chr1:89749839..89749881,+p1@Dgkd
Mm9::chr2:112106018..112106082,+p3@Slc12a6
Mm9::chr2:158526707..158526708,+p@chr2:158526707..158526708
+
Mm9::chr4:56929012..56929023,-p@chr4:56929012..56929023
-
Mm9::chr5:141476512..141476543,-p3@Card11
Mm9::chr5:34575662..34575684,-p4@Zfyve28
Mm9::chr6:121222718..121222745,-p@chr6:121222718..121222745
-
Mm9::chr6:128837604..128837610,+p1@Clec2i
Mm9::chr7:29767851..29767911,+p1@Map4k1
Mm9::chr7:29769748..29769749,+p@chr7:29769748..29769749
+
Mm9::chr7:4412289..4412332,+p1@Eps8l1
Mm9::chr7:4412340..4412351,+p2@Eps8l1
Mm9::chr7:53314509..53314565,-p@chr7:53314509..53314565
-
Mm9::chr7:87343276..87343344,+p3@Sema4b
Mm9::chr8:11556867..11556918,+p@chr8:11556867..11556918
+
Mm9::chr9:32348906..32348920,-p3@Fli1
Mm9::chr9:57269180..57269193,-p@chr9:57269180..57269193
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0032944regulation of mononuclear cell proliferation0.00475871526897105
GO:0050670regulation of lymphocyte proliferation0.00475871526897105
GO:0032943mononuclear cell proliferation0.00555133419886413
GO:0046651lymphocyte proliferation0.00555133419886413
GO:0045076regulation of interleukin-2 biosynthetic process0.00555133419886413
GO:0051249regulation of lymphocyte activation0.00555133419886413
GO:0050865regulation of cell activation0.00555133419886413
GO:0042094interleukin-2 biosynthetic process0.00555133419886413
GO:0032623interleukin-2 production0.0056357446767541
GO:0030041actin filament polymerization0.0057446821543281
GO:0030888regulation of B cell proliferation0.00804288610178782
GO:0042100B cell proliferation0.0122743599463278
GO:0030036actin cytoskeleton organization and biogenesis0.0173835408549393
GO:0030029actin filament-based process0.0185098557713758
GO:0050864regulation of B cell activation0.0185098557713758
GO:0051258protein polymerization0.0186270750013696
GO:0008154actin polymerization and/or depolymerization0.0186270750013696
GO:0042129regulation of T cell proliferation0.0186270750013696
GO:0046649lymphocyte activation0.0186270750013696
GO:0045610regulation of hemocyte differentiation0.0186270750013696
GO:0042386hemocyte differentiation0.0186270750013696
GO:0004633phosphopantothenoylcysteine decarboxylase activity0.0186270750013696
GO:0042035regulation of cytokine biosynthetic process0.0218420849105439
GO:0045321leukocyte activation0.0218420849105439
GO:0042098T cell proliferation0.0244722713607449
GO:0001775cell activation0.0246598869635554
GO:0042089cytokine biosynthetic process0.0264246680723444
GO:0042107cytokine metabolic process0.0264246680723444
GO:0050863regulation of T cell activation0.0264246680723444
GO:0004144diacylglycerol O-acyltransferase activity0.0264246680723444
GO:0051014actin filament severing0.0264246680723444
GO:0051239regulation of multicellular organismal process0.0384332951015432
GO:0030695GTPase regulator activity0.0424162388366757
GO:0042113B cell activation0.0424162388366757
GO:00038462-acylglycerol O-acyltransferase activity0.0454617984365382
GO:0006651diacylglycerol biosynthetic process0.0454617984365382
GO:0042127regulation of cell proliferation0.0480240436370861



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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