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MCL coexpression mm9:433: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0.012325008677128,0,0,0,0,0,0,0.180840494114715,0.889741863132467,0.852090477307305,0.226566880277176,0.0333321253665857,0.127882415780397,0.0699790221274244,0,0,0,0.0636076933539527,0,0.0817239616722881,0,0.0411126530948397,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217459793079341,0.2507456850819,0.11094437886138,0.200913802025349,0,0.17187568289743,0,0,0,0,0,0,0,0,0,0.302481506279645,0.389294454188438,0.223284998180554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0.0316393102377815,0.336857257911331,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0851089148667383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725367973612431,0.602007183876538,0.6464915694236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505828273369903,0.500902538795648,0.563319308824202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.780527777914793,0.879538454100203,0.635161864741652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00589201076820856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0046541;saliva secretion;0.0456920771900011;16534!GO:0050714;positive regulation of protein secretion;0.0456920771900011;16534!GO:0042069;regulation of catecholamine metabolic process;0.0456920771900011;18227!GO:0042053;regulation of dopamine metabolic process;0.0456920771900011;18227!GO:0051047;positive regulation of secretion;0.0456920771900011;16534!GO:0007589;fluid secretion;0.0456920771900011;16534!GO:0015269;calcium-activated potassium channel activity;0.0456920771900011;16534!GO:0022600;digestive system process;0.0456920771900011;16534!GO:0022839;ion gated channel activity;0.0456920771900011;16534!GO:0005227;calcium activated cation channel activity;0.0456920771900011;16534!GO:0050708;regulation of protein secretion;0.0456920771900011;16534!
|gostat_on_MCL_coexpression=GO:0046541;saliva secretion;0.0456920771900011;16534!GO:0050714;positive regulation of protein secretion;0.0456920771900011;16534!GO:0042069;regulation of catecholamine metabolic process;0.0456920771900011;18227!GO:0042053;regulation of dopamine metabolic process;0.0456920771900011;18227!GO:0051047;positive regulation of secretion;0.0456920771900011;16534!GO:0007589;fluid secretion;0.0456920771900011;16534!GO:0015269;calcium-activated potassium channel activity;0.0456920771900011;16534!GO:0022600;digestive system process;0.0456920771900011;16534!GO:0022839;ion gated channel activity;0.0456920771900011;16534!GO:0005227;calcium activated cation channel activity;0.0456920771900011;16534!GO:0050708;regulation of protein secretion;0.0456920771900011;16534!
}}
}}

Revision as of 12:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120416369..120416378,-p@chr10:120416369..120416378
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Mm9::chr12:4925036..4925055,-p@chr12:4925036..4925055
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Mm9::chr16:17722647..17722693,+p@chr16:17722647..17722693
+
Mm9::chr17:17511579..17511588,+p@chr17:17511579..17511588
+
Mm9::chr17:29626018..29626030,-p@chr17:29626018..29626030
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Mm9::chr17:29626283..29626293,+p@chr17:29626283..29626293
+
Mm9::chr19:36423777..36423809,-p@chr19:36423777..36423809
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Mm9::chr2:56976467..56976482,-p4@Nr4a2
Mm9::chr4:102244812..102244831,-p@chr4:102244812..102244831
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Mm9::chr4:102244969..102244982,+p@chr4:102244969..102244982
+
Mm9::chr7:25155202..25155218,+p8@Kcnn4
Mm9::chr7:26465861..26465880,+p2@B9d2
Mm9::chr7:87546167..87546184,+p@chr7:87546167..87546184
+
Mm9::chr9:75255861..75255886,+p@chr9:75255861..75255886
+
Mm9::chr9:75255893..75255906,+p@chr9:75255893..75255906
+
Mm9::chr9:75256131..75256135,+p@chr9:75256131..75256135
+
Mm9::chrX:101176473..101176487,-p3@Rlim


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0046541saliva secretion0.0456920771900011
GO:0050714positive regulation of protein secretion0.0456920771900011
GO:0042069regulation of catecholamine metabolic process0.0456920771900011
GO:0042053regulation of dopamine metabolic process0.0456920771900011
GO:0051047positive regulation of secretion0.0456920771900011
GO:0007589fluid secretion0.0456920771900011
GO:0015269calcium-activated potassium channel activity0.0456920771900011
GO:0022600digestive system process0.0456920771900011
GO:0022839ion gated channel activity0.0456920771900011
GO:0005227calcium activated cation channel activity0.0456920771900011
GO:0050708regulation of protein secretion0.0456920771900011



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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